BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0772900 Os01g0772900|AK073362
(328 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0772900 Similar to Homocysteine S-methyltransferase 4 ... 533 e-152
Os12g0607000 Similar to Homocysteine S-methyltransferase 2 ... 334 7e-92
Os10g0422200 Similar to Homocysteine S-methyltransferase 3 ... 323 8e-89
Os03g0221200 Similar to Homocysteine S-methyltransferase 1 ... 240 1e-63
>Os01g0772900 Similar to Homocysteine S-methyltransferase 4 (EC 2.1.1.10) (S-
methylmethionine:homocysteine methyltransferase 4)
(SMM:Hcy S- methyltransferase 4) (ZmHMT-4)
Length = 328
Score = 533 bits (1374), Expect = e-152, Method: Compositional matrix adjust.
Identities = 269/312 (86%), Positives = 269/312 (86%)
Query: 17 FVREAGGCAVVDGGLATELEAHGADLHDELWSASCLVSAPHLIRKVHLDYLDAGANIITS 76
FVREAGGCAVVDGGLATELEAHGADLHDELWSASCLVSAPHLIRKVHLDYLDAGANIITS
Sbjct: 17 FVREAGGCAVVDGGLATELEAHGADLHDELWSASCLVSAPHLIRKVHLDYLDAGANIITS 76
Query: 77 ASYQATIQGFQAXXXXXXXXXXXXXXXVHIAQEARAIFAEGWSKGPYANHRSSPRRPVLV 136
ASYQATIQGFQA VHIAQEARAIFAEGWSKGPYANHRSSPRRPVLV
Sbjct: 77 ASYQATIQGFQARGLSRERSEALLRRSVHIAQEARAIFAEGWSKGPYANHRSSPRRPVLV 136
Query: 137 AASIGSYGAYLADGSEYTGDYGISVTKETLKSFHRRRLQVLADAGPDLIAFETIPNKLEA 196
AASIGSYGAYLADGSEYTGDYGISVTKETLKSFHRRRLQVLADAGPDLIAFETIPNKLEA
Sbjct: 137 AASIGSYGAYLADGSEYTGDYGISVTKETLKSFHRRRLQVLADAGPDLIAFETIPNKLEA 196
Query: 197 QASGDPITEXXXXXXXXXXXXXXXXNCTAPRLVHGLILSIRKVTSKPVVVYPNSGETYVA 256
QASGDPITE NCTAPRLVHGLILSIRKVTSKPVVVYPNSGETYVA
Sbjct: 197 QASGDPITECAAVADACARVGAVGVNCTAPRLVHGLILSIRKVTSKPVVVYPNSGETYVA 256
Query: 257 ETKEWVESEGGASETDFVSCVGKWRQAGAALVGGCCRTSPATVRAISWALRESXXXXXXX 316
ETKEWVESEGGASETDFVSCVGKWRQAGAALVGGCCRTSPATVRAISWALRES
Sbjct: 257 ETKEWVESEGGASETDFVSCVGKWRQAGAALVGGCCRTSPATVRAISWALRESDDAVGGD 316
Query: 317 XXXXXFPAVAVL 328
FPAVAVL
Sbjct: 317 GDRDDFPAVAVL 328
>Os12g0607000 Similar to Homocysteine S-methyltransferase 2 (EC 2.1.1.10) (S-
methylmethionine:homocysteine methyltransferase 2)
(SMM:Hcy S- methyltransferase 2) (ZmHMT-2)
Length = 342
Score = 334 bits (856), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 177/319 (55%), Positives = 212/319 (66%), Gaps = 35/319 (10%)
Query: 17 FVREAGGCAVVDGGLATELEAHGADLHDELWSASCLVSAPHLIRKVHLDYLDAGANIITS 76
+V GG V+DGGLATELEA+GADL+D LWSA CL+S+PHL+RKVHLDYL+AGANII +
Sbjct: 22 WVEAGGGRLVMDGGLATELEANGADLNDPLWSAKCLLSSPHLVRKVHLDYLEAGANIIIT 81
Query: 77 ASYQATIQGFQAXXXXXXXXXXXXXXXVHIAQEARAIFAEGWSKGPYANHRSSPRRPVLV 136
ASYQATIQGF++ V IA+EAR +F + S P + P+LV
Sbjct: 82 ASYQATIQGFESKGFSKEQSEDLLAKSVEIAREARDMFLKEHSDRPI-------QHPILV 134
Query: 137 AASIGSYGAYLADGSEYTGDYGISVTKETLKSFHRRRLQVLADAGPDLIAFETIPNKLEA 196
AASIGSYGAYLADGSEY+GDYG + T E LK FH+RRL+VLA+AGPDLIAFETIPNKLEA
Sbjct: 135 AASIGSYGAYLADGSEYSGDYGEAGTLEFLKDFHKRRLEVLAEAGPDLIAFETIPNKLEA 194
Query: 197 QA---------------------------SGDPITEXXXXXXXXXXXXXXXXNCTAPRLV 229
QA SGD + E NCT PR +
Sbjct: 195 QAYVELLDECNISIPAWFSFNSKDGVHIVSGDSLIECATIANGCSKVGAVGINCTPPRFI 254
Query: 230 HGLILSIRKVTSKPVVVYPNSGETYVAETKEWVESEGGASETDFVSCVGKWRQAGAALVG 289
HGLILSIRKVT KP+++YPNSGE Y AE KEWVES G S+ DFVS V +W + GA L+G
Sbjct: 255 HGLILSIRKVTDKPILIYPNSGERYDAEKKEWVEST-GVSDGDFVSYVNEWCKDGAVLIG 313
Query: 290 GCCRTSPATVRAISWALRE 308
GCCRT+P T++AIS +L +
Sbjct: 314 GCCRTTPNTIKAISRSLNQ 332
>Os10g0422200 Similar to Homocysteine S-methyltransferase 3 (EC 2.1.1.10) (S-
methylmethionine:homocysteine methyltransferase 3)
(SMM:Hcy S- methyltransferase 3) (ZmHMT-3)
Length = 335
Score = 323 bits (829), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 171/319 (53%), Positives = 207/319 (64%), Gaps = 30/319 (9%)
Query: 17 FVREAGGCAVVDGGLATELEAHGADLHDELWSASCLVSAPHLIRKVHLDYLDAGANIITS 76
F+R +GG AV+DGGLATELEA+GADL D LWSA CL + P LIRKVHLDYL+AGA+++ +
Sbjct: 15 FLRGSGGAAVIDGGLATELEANGADLKDALWSARCLFTCPDLIRKVHLDYLEAGASVLIT 74
Query: 77 ASYQATIQGFQAXXXXXXXXXXXXXXXVHIAQEARAIFAEGWSKGPYANHRSSP--RRPV 134
SYQATIQGF + V +A EARAI+ E S G + +RP+
Sbjct: 75 GSYQATIQGFLSKGFSQEESESFLRRSVELACEARAIYLEKCSNGSDEAKDVTKYRKRPI 134
Query: 135 LVAASIGSYGAYLADGSEYTGDYGISVTKETLKSFHRRRLQVLADAGPDLIAFETIPNKL 194
L+AAS+GSYGAYLADGSEY+GDYG T E LK+FH RRLQVLA+AGPD+I FETIPNK+
Sbjct: 135 LIAASVGSYGAYLADGSEYSGDYGNEGTLEFLKNFHLRRLQVLAEAGPDVIVFETIPNKI 194
Query: 195 EAQA---------------------------SGDPITEXXXXXXXXXXXXXXXXNCTAPR 227
E QA SGD + E NCT PR
Sbjct: 195 ETQAYVELLEECKLRIPAWFGFTSKDGVNVVSGDSLIECASIADSCKEVAAVGINCTPPR 254
Query: 228 LVHGLILSIRKVTSKPVVVYPNSGETYVAETKEWVESEGGASETDFVSCVGKWRQAGAAL 287
+H L+LSIRKVTSKP+++YPNSGE+Y KEWVE G ++E DFVS V KW +AGA+L
Sbjct: 255 FIHELVLSIRKVTSKPILIYPNSGESYDPIRKEWVECSGISNE-DFVSYVKKWHEAGASL 313
Query: 288 VGGCCRTSPATVRAISWAL 306
+GGCCRTSP T+R IS AL
Sbjct: 314 IGGCCRTSPDTIRGISKAL 332
>Os03g0221200 Similar to Homocysteine S-methyltransferase 1 (EC 2.1.1.10) (S-
methylmethionine:homocysteine methyltransferase 1)
(SMM:Hcy S- methyltransferase 1) (ZmHMT-1)
Length = 282
Score = 240 bits (612), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 131/276 (47%), Positives = 160/276 (57%), Gaps = 34/276 (12%)
Query: 17 FVREAGGCAVVDGGLATELEAHGADLHDELWSASCLVSAPHLIRKVHLDYLDAGANIITS 76
VR AGGCAV+DGG AT+LEA GAD++D LWSA+CL++ PHLI++VH+ YL+AGA++I S
Sbjct: 8 IVRRAGGCAVIDGGFATQLEALGADINDPLWSAACLITKPHLIKEVHMQYLEAGADVIIS 67
Query: 77 ASYQATIQGFQAXXXXXXXXXXXXXXXVHIAQEARAIFAEGWSKGPYANHRSSP-RRPVL 135
+SYQATI GF A + +A EAR F W +S P L
Sbjct: 68 SSYQATIPGFLARGMLLEEAEGLLRRSIELALEARDEF---WKS---TLRKSKPVYNRAL 121
Query: 136 VAASIGSYGAYLADGSEYTGDYGISVTKETLKSFHRRRLQVLADAGPDLIAFETIPNKLE 195
VAASIGSYGAYLADGSEY+G YG +T E LK FHRRRLQVLA AGPDLIAFE IPNK+E
Sbjct: 122 VAASIGSYGAYLADGSEYSGSYGEDITAEKLKDFHRRRLQVLASAGPDLIAFEAIPNKME 181
Query: 196 AQA---------------------------SGDPITEXXXXXXXXXXXXXXXXNCTAPRL 228
AQA SG+ E NCT P+
Sbjct: 182 AQALVELLEEENIQVPSWICFSSVDGKNLCSGESFAECLQFLNASDKVTIVGVNCTPPQF 241
Query: 229 VHGLILSIRKVTSKPVVVYPNSGETYVAETKEWVES 264
+ G+I ++K T K + VYPNSGE + K W+ S
Sbjct: 242 IEGIIRELKKQTKKAIAVYPNSGEIWDGRAKRWLVS 277
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.132 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,938,796
Number of extensions: 375200
Number of successful extensions: 859
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 849
Number of HSP's successfully gapped: 4
Length of query: 328
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 227
Effective length of database: 11,762,187
Effective search space: 2670016449
Effective search space used: 2670016449
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)