Os12g0607000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Homocysteine S-methyltransferase 2 (EC 2.1.1.10) (S- methylmethionine:homocysteine methyltransferase 2) (SMM:Hcy S- methyltransferase 2) (ZmHMT-2).
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Os12g0607000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Homocysteine S-methyltransferase 2 (EC 2.1.1.10) (S- methylmethionine:homocysteine methyltransferase 2) (SMM:Hcy S- methyltransferase 2) (ZmHMT-2).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 123.51 | 0.522 | 13.2 | 0.654 | 2.31 | -1.26 | -0.155 | -3.57 | -0.00933 | 19.6 | 0.8289 | 4328 | -- | -- |
| 129.1 | 0.529 | 13.3 | 0.116 | 2.3 | -0.738 | -0.185 | -- | -0.164 | 19.4 | 3.847 | 11305 | -- | -- |
| 123.56 | 0.518 | 13.2 | 0.661 | 2.32 | -1.28 | -- | -3.63 | -0.00832 | 19.6 | 0.7803 | 4333 | -- | -- |
| 128.9 | 0.529 | 13.3 | 0.0656 | 2.3 | -0.73 | -- | -- | -0.139 | 19.5 | 3.36 | 11393 | -- | -- |
| 252.2 | 0.74 | 13.2 | 0.0623 | -- | -2.33 | -- | -3.14 | 0.0642 | -- | 1.626 | 5243 | -- | -- |
| 140.45 | 0.556 | 13.3 | 0.214 | 2.3 | -- | -0.183 | -- | 0.015 | 19.6 | -- | -- | -- | -- |
| 140.54 | 0.555 | 13.3 | 0.218 | 2.3 | -- | -- | -- | 0.0148 | 19.6 | -- | -- | -- | -- |
| 213.07 | 0.68 | 13.4 | 0.106 | -- | -2.64 | -- | -- | -0.46 | -- | 3.091 | 3745 | -- | -- |
| 127.7 | 0.526 | 13.3 | -- | 2.23 | -0.691 | -- | -- | -0.177 | 19.5 | 2.673 | 18562 | -- | -- |
| 424.54 | 0.963 | 13.2 | 0.187 | -- | -- | -- | -- | -0.0194 | -- | -- | -- | -- | -- |
| 141.8 | 0.557 | 13.3 | -- | 2.3 | -- | -- | -- | -0.0095 | 19.7 | -- | -- | -- | -- |
| 197.04 | 0.654 | 13.4 | -- | -- | -3.44 | -- | -- | -0.487 | -- | 2.96 | 3770 | -- | -- |
| 425.46 | 0.963 | 13.2 | -- | -- | -- | -- | -- | -0.0401 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 116.94 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 8 |
| 3 | 117.82 | temperature | 30 | 270 | < th | dose dependent | rect. | 18 | 17 |
| 16 | 119.18 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 3 |
| 18 | 119.44 | humidity | 90 | 14400 | < th | dose independent | rect. | 17 | 9 |
| 20 | 119.50 | humidity | 90 | 14400 | < th | dose independent | rect. | 14 | 12 |
| 26 | 119.54 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 19 |
| 33 | 119.62 | humidity | 90 | 14400 | < th | dose independent | rect. | 10 | 16 |
| 38 | 119.72 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 45 | 119.80 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 2 |
| 49 | 119.83 | humidity | 90 | 14400 | < th | dose independent | sin | 16 | NA |
| 53 | 119.86 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 4 |
| 63 | 120.00 | humidity | 90 | 14400 | < th | dose independent | rect. | 20 | 5 |
| 74 | 120.12 | temperature | 30 | 14400 | < th | dose dependent | rect. | 19 | 3 |
| 77 | 120.13 | temperature | 10 | 14400 | > th | dose dependent | rect. | 19 | 3 |
| 90 | 120.18 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 100 | 120.21 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 6 |
| 250 | 120.52 | radiation | 40 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 266 | 120.53 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 22 |
| 277 | 120.55 | temperature | 25 | 14400 | < th | dose dependent | sin | 15 | NA |
| 288 | 120.56 | radiation | 40 | 4320 | < th | dose dependent | rect. | 17 | 10 |
| 320 | 120.60 | radiation | 40 | 4320 | < th | dose dependent | rect. | 17 | 8 |
| 345 | 120.64 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 6 |
| 378 | 120.68 | temperature | 25 | 14400 | < th | dose independent | rect. | 14 | 9 |
| 390 | 120.70 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 22 |
| 392 | 120.70 | radiation | 40 | 4320 | < th | dose dependent | rect. | 17 | 4 |
| 415 | 120.73 | temperature | 25 | 14400 | > th | dose independent | rect. | 14 | 9 |
| 485 | 120.78 | temperature | 25 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 486 | 120.78 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 512 | 120.80 | temperature | 25 | 14400 | < th | dose independent | rect. | 15 | 5 |
| 541 | 120.82 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 5 |
| 555 | 120.83 | temperature | 10 | 14400 | > th | dose dependent | sin | 13 | NA |
| 590 | 120.85 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 18 |
| 599 | 120.86 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 756 | 120.97 | humidity | 90 | 14400 | < th | dose independent | rect. | 14 | 21 |
| 759 | 120.97 | radiation | 1 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 777 | 120.98 | humidity | 90 | 14400 | < th | dose independent | rect. | 20 | 23 |
| 793 | 120.99 | humidity | 90 | 14400 | > th | dose independent | rect. | 17 | 9 |
| 812 | 121.00 | temperature | 25 | 14400 | < th | dose dependent | no | NA | NA |
| 827 | 121.00 | temperature | 25 | 14400 | < th | dose dependent | rect. | 5 | 23 |
| 832 | 121.01 | humidity | 90 | 14400 | < th | dose independent | rect. | 17 | 18 |
| 847 | 121.01 | temperature | 25 | 14400 | < th | dose dependent | rect. | 3 | 23 |
| 872 | 121.03 | temperature | 25 | 14400 | < th | dose dependent | rect. | 20 | 23 |
| 873 | 121.03 | temperature | 25 | 14400 | < th | dose dependent | rect. | 24 | 23 |
| 918 | 121.06 | humidity | 90 | 14400 | > th | dose independent | rect. | 10 | 17 |
| 936 | 121.07 | humidity | 90 | 14400 | < th | dose independent | rect. | 17 | 22 |
| 997 | 121.10 | humidity | 90 | 14400 | < th | dose independent | no | NA | NA |