BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0210800 Os03g0210800|015-030-A05
(871 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0210800 Hypothetical protein 1664 0.0
Os11g0114700 PAP/25A core domain containing protein 112 1e-24
Os12g0283100 DNA polymerase, beta-like region domain contai... 88 4e-17
Os03g0336700 PAP/25A core domain containing protein 84 7e-16
>Os03g0210800 Hypothetical protein
Length = 871
Score = 1664 bits (4309), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 815/871 (93%), Positives = 815/871 (93%)
Query: 1 MTAEPPRMDAAELLLSKSFLDKCSYAYAVTPRIQESQGQQPFVSKHFNVIDPLRTNNNLG 60
MTAEPPRMDAAELLLSKSFLDKCSYAYAVTPRIQESQGQQPFVSKHFNVIDPLRTNNNLG
Sbjct: 1 MTAEPPRMDAAELLLSKSFLDKCSYAYAVTPRIQESQGQQPFVSKHFNVIDPLRTNNNLG 60
Query: 61 RSVSKGNFFRIRSAFSFGAKRLAKLLECPKEDLIAEVNQFFTNTWIRHGSGNRPDAPTLG 120
RSVSKGNFFRIRSAFSFGAKRLAKLLECPKEDLIAEVNQFFTNTWIRHGSGNRPDAPTLG
Sbjct: 61 RSVSKGNFFRIRSAFSFGAKRLAKLLECPKEDLIAEVNQFFTNTWIRHGSGNRPDAPTLG 120
Query: 121 LVHQHHLKVVPAEASNSQRSAMALKKNAENPNIRANQDNLSENANSYPEATSQPLQRSVL 180
LVHQHHLKVVPAEASNSQRSAMALKKNAENPNIRANQDNLSENANSYPEATSQPLQRSVL
Sbjct: 121 LVHQHHLKVVPAEASNSQRSAMALKKNAENPNIRANQDNLSENANSYPEATSQPLQRSVL 180
Query: 181 HPRNSLRTVNPSDSHAHHQKVHVTHANTKVSEQLERNSSDGSMQNERNKTVPNSLFVNDR 240
HPRNSLRTVNPSDSHAHHQKVHVTHANTKVSEQLERNSSDGSMQNERNKTVPNSLFVNDR
Sbjct: 181 HPRNSLRTVNPSDSHAHHQKVHVTHANTKVSEQLERNSSDGSMQNERNKTVPNSLFVNDR 240
Query: 241 NGQNRSRFARTRSSPELTDPSVEGYSRGRRTGVVEMDKSLKVDYNSRRNNLAPEVSSSHI 300
NGQNRSRFARTRSSPELTDPSVEGYSRGRRTGVVEMDKSLKVDYNSRRNNLAPEVSSSHI
Sbjct: 241 NGQNRSRFARTRSSPELTDPSVEGYSRGRRTGVVEMDKSLKVDYNSRRNNLAPEVSSSHI 300
Query: 301 TKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYREDNGFIMNEELPSVSEASDKQQEEQV 360
TK YREDNGFIMNEELPSVSEASDKQQEEQV
Sbjct: 301 TKSSQDESVSSMNSSSHYSGKAASDSNSVSSSYREDNGFIMNEELPSVSEASDKQQEEQV 360
Query: 361 LVNLMSSAKLHDFNGQVQLPIEMPPHXXXXXXXXXXXXXXXXKHFAGIPPTSLIGAPWSN 420
LVNLMSSAKLHDFNGQVQLPIEMPPH KHFAGIPPTSLIGAPWSN
Sbjct: 361 LVNLMSSAKLHDFNGQVQLPIEMPPHFSVAPSPLLAPAAFPPKHFAGIPPTSLIGAPWSN 420
Query: 421 MHLIHGYVSPPMAHYVQNHTFAPNIEEGNESEKPITPDASRDDGNNWHEYGVGFPRYFNH 480
MHLIHGYVSPPMAHYVQNHTFAPNIEEGNESEKPITPDASRDDGNNWHEYGVGFPRYFNH
Sbjct: 421 MHLIHGYVSPPMAHYVQNHTFAPNIEEGNESEKPITPDASRDDGNNWHEYGVGFPRYFNH 480
Query: 481 QGRDPQMRHFNGKEHSSSPNSVSGAPFERQGEIAVEDNGAVEENYTNMFQNQTSRQASIN 540
QGRDPQMRHFNGKEHSSSPNSVSGAPFERQGEIAVEDNGAVEENYTNMFQNQTSRQASIN
Sbjct: 481 QGRDPQMRHFNGKEHSSSPNSVSGAPFERQGEIAVEDNGAVEENYTNMFQNQTSRQASIN 540
Query: 541 TRIGSGNARIPSSQSGLSRNKAMPENSWGESAGNTTRSLRDKWGKRPAFAAPDTTTHSKN 600
TRIGSGNARIPSSQSGLSRNKAMPENSWGESAGNTTRSLRDKWGKRPAFAAPDTTTHSKN
Sbjct: 541 TRIGSGNARIPSSQSGLSRNKAMPENSWGESAGNTTRSLRDKWGKRPAFAAPDTTTHSKN 600
Query: 601 NTGWQTGNASEHIPPEVDDGARNGVIVPNIRHEASDIITGSGSTASRTSQVPNDFEPSQI 660
NTGWQTGNASEHIPPEVDDGARNGVIVPNIRHEASDIITGSGSTASRTSQVPNDFEPSQI
Sbjct: 601 NTGWQTGNASEHIPPEVDDGARNGVIVPNIRHEASDIITGSGSTASRTSQVPNDFEPSQI 660
Query: 661 GMPNPLFAPLFIGSPQQRQSGNGGLTFIQTGPAVPFLMLPYAPGNDGSVPQFERNEGVDQ 720
GMPNPLFAPLFIGSPQQRQSGNGGLTFIQTGPAVPFLMLPYAPGNDGSVPQFERNEGVDQ
Sbjct: 661 GMPNPLFAPLFIGSPQQRQSGNGGLTFIQTGPAVPFLMLPYAPGNDGSVPQFERNEGVDQ 720
Query: 721 LPVNIAVQNFSSLNNVHHPDINXXXXXXXXXXGDPSEEQKPDILNSDFDSHWCNLQYGRS 780
LPVNIAVQNFSSLNNVHHPDIN GDPSEEQKPDILNSDFDSHWCNLQYGRS
Sbjct: 721 LPVNIAVQNFSSLNNVHHPDINATSTASSSTAGDPSEEQKPDILNSDFDSHWCNLQYGRS 780
Query: 781 CQNPRPMNPVLYPFAVPPMYLQGHVPWDGPGRPASTNVNWTQMVPPSQRIYPMMPLQPSS 840
CQNPRPMNPVLYPFAVPPMYLQGHVPWDGPGRPASTNVNWTQMVPPSQRIYPMMPLQPSS
Sbjct: 781 CQNPRPMNPVLYPFAVPPMYLQGHVPWDGPGRPASTNVNWTQMVPPSQRIYPMMPLQPSS 840
Query: 841 ERITGGPQHHTEDAPRYRGGTGTYLPNPVRS 871
ERITGGPQHHTEDAPRYRGGTGTYLPNPVRS
Sbjct: 841 ERITGGPQHHTEDAPRYRGGTGTYLPNPVRS 871
>Os11g0114700 PAP/25A core domain containing protein
Length = 801
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 75/121 (61%), Gaps = 1/121 (0%)
Query: 1 MTAEPPRMDAAELLLSKSFLDKCSYAYAVTPRIQESQGQQPFVSKHFNVIDPLRTNNNLG 60
+ + P + + + FL +C+ + V PR E + Q F K FN++DPL+ +NNLG
Sbjct: 258 LVTDSPDTVNDDFTMREDFLKECAQWFTVLPRNSE-KNTQVFPRKFFNIVDPLKQSNNLG 316
Query: 61 RSVSKGNFFRIRSAFSFGAKRLAKLLECPKEDLIAEVNQFFTNTWIRHGSGNRPDAPTLG 120
RSVSKGNF RIRSAF FGA++L K+++ P + EVNQFF NT RH S RPD +
Sbjct: 317 RSVSKGNFLRIRSAFDFGARKLGKIIQVPDNFTMDEVNQFFRNTLKRHCSRVRPDVQEIA 376
Query: 121 L 121
L
Sbjct: 377 L 377
>Os12g0283100 DNA polymerase, beta-like region domain containing protein
Length = 989
Score = 87.8 bits (216), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 52/75 (69%)
Query: 42 FVSKHFNVIDPLRTNNNLGRSVSKGNFFRIRSAFSFGAKRLAKLLECPKEDLIAEVNQFF 101
F KH N+IDPL+ +NNLGRSVS+G+F+RIR A SFGA++L ++L + + E+ FF
Sbjct: 304 FCLKHLNIIDPLKWSNNLGRSVSRGSFYRIRGALSFGAQKLGQILMLHSDLIPTEIFGFF 363
Query: 102 TNTWIRHGSGNRPDA 116
NT RHG G R D
Sbjct: 364 ANTLKRHGRGERSDV 378
>Os03g0336700 PAP/25A core domain containing protein
Length = 1035
Score = 83.6 bits (205), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 64/105 (60%), Gaps = 6/105 (5%)
Query: 11 AELLLSKSFLDKCSYAYAVTPRIQESQGQQPFVSKHFNVIDPLRTNNNLGRSVSKGNFFR 70
++LL K FL+ + + F SK+ N+IDPL+ +NNLGRSV+K +F R
Sbjct: 272 SDLLFDKEFLNN------SVQKTDSNACNTEFRSKYLNIIDPLKEHNNLGRSVNKASFNR 325
Query: 71 IRSAFSFGAKRLAKLLECPKEDLIAEVNQFFTNTWIRHGSGNRPD 115
IR+AFS+GA++L ++L E + E+ FF NT R GSG RPD
Sbjct: 326 IRTAFSYGAQKLGQVLLLQPELIPDEIYGFFKNTLNRIGSGVRPD 370
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.129 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 32,251,193
Number of extensions: 1475354
Number of successful extensions: 2840
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2836
Number of HSP's successfully gapped: 4
Length of query: 871
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 761
Effective length of database: 11,292,261
Effective search space: 8593410621
Effective search space used: 8593410621
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 160 (66.2 bits)