BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0181100 Os03g0181100|AK120087
         (187 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0181100  ZIM domain containing protein                       233   9e-62
Os10g0392400  ZIM domain containing protein                        93   1e-19
Os03g0180900  ZIM domain containing protein                        79   2e-15
Os09g0439200  ZIM domain containing protein                        69   2e-12

>Os03g0181100 ZIM domain containing protein
          Length = 187

 Score =  233 bits (593), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 127/187 (67%), Positives = 127/187 (67%)

Query: 1   MAMEGKSRRFAVACGVLSQYVRXXXXXXXXXXXXXXXXVTTLSLMPXXXXXXXXXXXXXX 60
           MAMEGKSRRFAVACGVLSQYVR                VTTLSLMP              
Sbjct: 1   MAMEGKSRRFAVACGVLSQYVRAEQKMAAAAGAAPARAVTTLSLMPGAEVVVEEEERREV 60

Query: 61  XXXXXXXXXXXXXXLTIFYGGRMVVFEDFPADKAAEVMRMASSGMAAAPAQREGAALADM 120
                         LTIFYGGRMVVFEDFPADKAAEVMRMASSGMAAAPAQREGAALADM
Sbjct: 61  GEEEAGPATAPAAPLTIFYGGRMVVFEDFPADKAAEVMRMASSGMAAAPAQREGAALADM 120

Query: 121 PIMRKASLQRFFAKRKDRLAATTPYARPSPAETKASEPEEKKTPTSWXXXXXXXXXXXXX 180
           PIMRKASLQRFFAKRKDRLAATTPYARPSPAETKASEPEEKKTPTSW             
Sbjct: 121 PIMRKASLQRFFAKRKDRLAATTPYARPSPAETKASEPEEKKTPTSWLDLAASASAAARR 180

Query: 181 XXXTIAL 187
              TIAL
Sbjct: 181 DSLTIAL 187



>Os10g0392400 ZIM domain containing protein
          Length = 171

 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/181 (38%), Positives = 85/181 (46%), Gaps = 27/181 (14%)

Query: 1   MAMEGKSRRFAVACGVLSQYVRXXXXXXXXXXXXXXXXVT-------TLSLMPXXXXXXX 53
           MA  G S RFAV CG+LSQY+R                         T+ L P       
Sbjct: 1   MAAAGSSSRFAVTCGLLSQYMRERQQPQPPVTVLEAVAEEEEEEDARTMQLFPPRAAAAD 60

Query: 54  XXXXXXXXXXXXXXXXXXXXXLTIFYGGRMVVFEDFPADKAAEVMRMASSGMAAAPAQ-R 112
                                LTIFY GRMVV +D P +KAAE+MR+A  G A +P Q  
Sbjct: 61  GVATPSAGTAP----------LTIFYDGRMVVVDDVPVEKAAELMRLA--GSACSPPQPA 108

Query: 113 EGAALADMPIMRKASLQRFFAKRKDRLAATT-PY-----ARPSPAETKASEPEEKKTPTS 166
             AAL +MPI RKASLQRF  KRK R+  T+ PY     A P+P ++ A  P  K  P +
Sbjct: 109 HAAALPEMPIARKASLQRFLQKRKHRITTTSEPYKKAAVASPAPEKSFAVAP-VKDEPAT 167

Query: 167 W 167
           W
Sbjct: 168 W 168



>Os03g0180900 ZIM domain containing protein
          Length = 209

 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 72/171 (42%), Gaps = 21/171 (12%)

Query: 5   GKSRRFAVACGVLSQYVRXXXXXXXXXXXXXXXXVTTLSLMPXXXXXXXX---------- 54
           G   RFAV CG+L QY++                VT +SLM                   
Sbjct: 20  GNGSRFAVTCGLLRQYMKEHSGSNGGGGFLPA--VTAMSLMTGGADAEEEAPEVRKTMEL 77

Query: 55  --XXXXXXXXXXXXXXXXXXXXLTIFYGGRMVVFEDFPADKAAEVMRMASSGMAAAPAQR 112
                                 LTIFYGG +VVF+DFPA+KA E+M++A S  + A A  
Sbjct: 78  FPQQAGTLKDTQERKEITEKAQLTIFYGGSVVVFDDFPAEKAGELMKLAGSRDSTAAAAV 137

Query: 113 EGA-------ALADMPIMRKASLQRFFAKRKDRLAATTPYARPSPAETKAS 156
             A        L DMPI RK SLQRF  KRK+R+    P       E ++S
Sbjct: 138 SDAGAAAGQPCLPDMPIARKVSLQRFLEKRKNRIVVAEPLPESEKKEAESS 188



>Os09g0439200 ZIM domain containing protein
          Length = 232

 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 16/84 (19%)

Query: 75  LTIFYGGRMVVFEDFPADKAAEVMRMASSGMAAA-------------PAQREGAALADMP 121
           LTIFYGG++VVFE+FP+ K  +++++ S+G                 PA     +L D+P
Sbjct: 121 LTIFYGGKVVVFENFPSTKVKDLLQIVSTGDGVDKNTGTAATQSLPRPAHN---SLPDLP 177

Query: 122 IMRKASLQRFFAKRKDRLAATTPY 145
           I R+ SL RF  KRK R+ A  PY
Sbjct: 178 IARRNSLHRFLEKRKGRMNANAPY 201



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.128    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,886,275
Number of extensions: 124848
Number of successful extensions: 739
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 736
Number of HSP's successfully gapped: 6
Length of query: 187
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 92
Effective length of database: 12,075,471
Effective search space: 1110943332
Effective search space used: 1110943332
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 153 (63.5 bits)