BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0179700 Os03g0179700|Os03g0179700
         (220 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0179700  Protein of unknown function DUF567 family protein   452   e-128
Os04g0446000  Protein of unknown function DUF567 family protein   239   1e-63
Os07g0230700  Protein of unknown function DUF567 family protein    69   2e-12

>Os03g0179700 Protein of unknown function DUF567 family protein
          Length = 220

 Score =  452 bits (1163), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 220/220 (100%), Positives = 220/220 (100%)

Query: 1   MTLASSSTLQELKELPYQMGAYAALTPVVSKIFCSSSQAVLMVRRRPPTVNGGGFVVTDR 60
           MTLASSSTLQELKELPYQMGAYAALTPVVSKIFCSSSQAVLMVRRRPPTVNGGGFVVTDR
Sbjct: 1   MTLASSSTLQELKELPYQMGAYAALTPVVSKIFCSSSQAVLMVRRRPPTVNGGGFVVTDR 60

Query: 61  DQRVVFSVDGCGIIGASGQLIVRDGDGTAILFIHKKGGVVQVLSINNWWKGYLMDYGEPS 120
           DQRVVFSVDGCGIIGASGQLIVRDGDGTAILFIHKKGGVVQVLSINNWWKGYLMDYGEPS
Sbjct: 61  DQRVVFSVDGCGIIGASGQLIVRDGDGTAILFIHKKGGVVQVLSINNWWKGYLMDYGEPS 120

Query: 121 KLVFSFQDPKPVLCMNGDVRVAVEPKGRKRHWDYEVIGSFSQRACTVRSRAGHVVAQIGV 180
           KLVFSFQDPKPVLCMNGDVRVAVEPKGRKRHWDYEVIGSFSQRACTVRSRAGHVVAQIGV
Sbjct: 121 KLVFSFQDPKPVLCMNGDVRVAVEPKGRKRHWDYEVIGSFSQRACTVRSRAGHVVAQIGV 180

Query: 181 KGMLAGKDFYHVVVQPGYDQAFVVGVIAILDNIHGESTRC 220
           KGMLAGKDFYHVVVQPGYDQAFVVGVIAILDNIHGESTRC
Sbjct: 181 KGMLAGKDFYHVVVQPGYDQAFVVGVIAILDNIHGESTRC 220



>Os04g0446000 Protein of unknown function DUF567 family protein
          Length = 199

 Score =  239 bits (609), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 109/194 (56%), Positives = 138/194 (71%)

Query: 27  PVVSKIFCSSSQAVLMVRRRPPTVNGGGFVVTDRDQRVVFSVDGCGIIGASGQLIVRDGD 86
           PVVSKIFCSS+   LM+RRRP  VNGGGFVVTD    VVF VDGCGI+G+ G+L+V+DGD
Sbjct: 6   PVVSKIFCSSTLTTLMIRRRPTVVNGGGFVVTDLGNNVVFIVDGCGILGSKGELLVKDGD 65

Query: 87  GTAILFIHKKGGVVQVLSINNWWKGYLMDYGEPSKLVFSFQDPKPVLCMNGDVRVAVEPK 146
           G  ILFI +KGG++Q LS  N W GY MDY    KL+FS  DPK  +     +R+ +EPK
Sbjct: 66  GEPILFISRKGGIIQALSTWNKWNGYSMDYQGKKKLIFSLSDPKSCIAKGAPIRIHIEPK 125

Query: 147 GRKRHWDYEVIGSFSQRACTVRSRAGHVVAQIGVKGMLAGKDFYHVVVQPGYDQAFVVGV 206
              ++WD+E+ GSF+ R CT+    G +V Q+G    +   DFYHVVVQ G D+AF++G 
Sbjct: 126 RHCKNWDFEISGSFADRNCTITDCTGTIVGQMGKTEQIGTNDFYHVVVQSGCDKAFIIGA 185

Query: 207 IAILDNIHGESTRC 220
           +A+LDNIHGESTRC
Sbjct: 186 MAVLDNIHGESTRC 199



>Os07g0230700 Protein of unknown function DUF567 family protein
          Length = 214

 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 93/194 (47%), Gaps = 11/194 (5%)

Query: 28  VVSKIFCSSSQAVLMVRRRPPTVNGGGFVVTDRDQRVVFSVDGCGIIGASGQLIVRDGDG 87
           VV   +C+     L V ++  ++  G F VTD +  VV +V G  +     + ++ D  G
Sbjct: 24  VVGPQYCAPYVVPLTVTKKSISLTDGDFTVTDANDNVVLNVKGT-LFSVRHRRVLHDAVG 82

Query: 88  TAILFIHKKGGVVQVLSINNWWKGYLMDYGEPSKLVFSFQDPKPVLCMNGDVRVAVEPKG 147
             +L + +K     +LS++N W+ Y  D       +F+ +    +  M  ++ + +    
Sbjct: 83  QPLLSMQEK-----ILSMHNRWEVYRGDSAHSCDKLFTVKKSSMLQLMKTEMDIFLAGNT 137

Query: 148 RKRHWDYEVIGSFSQRACTVR-SRAGHVVAQIGVKGMLA----GKDFYHVVVQPGYDQAF 202
            ++  D+++ GS+  R+      ++  ++AQ+  K   A    G+D + + V P  D  F
Sbjct: 138 AEQVCDFKIKGSYCDRSSAFYLGKSNTIIAQMNRKHTAASVVLGRDVFSITVFPQVDYVF 197

Query: 203 VVGVIAILDNIHGE 216
           +  ++AILD++H +
Sbjct: 198 IAALVAILDDVHRD 211



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.139    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,009,876
Number of extensions: 359147
Number of successful extensions: 654
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 654
Number of HSP's successfully gapped: 3
Length of query: 220
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 123
Effective length of database: 11,971,043
Effective search space: 1472438289
Effective search space used: 1472438289
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)