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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0179700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF567 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.69 (0.0425) R2 : 0.572
β1 : -2.1 (0.156) R2dD : 0.177 R2D : 0.139
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.65 (0.173) R2dE : 0.422 R2E : 0.359
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.336 (0.0908) R2dN8 : 0.0172 R2N8 : 0.0256
σ : 0.796
deviance : 291.81
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 2.509
memory length : 47
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 2.96
open length of G : 4.35

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
268.16 0.769 4.71 -2.21 0.476 3.55 -1.54 -0.989 0.33 0.406 2.635 40 3.18 4.28
267.87 0.762 4.7 -2.15 0.493 3.61 -1.5 -- 0.363 0.638 2.461 43 3.13 4.28
276.97 0.775 4.71 -2.2 0.493 3.69 -- -1.67 0.332 0.166 2.477 45 3.07 4.27
278.22 0.777 4.7 -2.11 0.491 3.55 -- -- 0.35 0.219 2.472 46 3.07 4.3
291.23 0.795 4.7 -2.19 -- 3.77 -- -1.67 0.337 -- 2.5 46 3.05 4.23
450.38 0.995 4.7 -1.87 1.52 -- -0.399 -- 0.247 4.03 -- -- -- --
450.81 0.994 4.7 -1.86 1.52 -- -- -- 0.25 4.09 -- -- -- --
291.81 0.796 4.69 -2.1 -- 3.65 -- -- 0.336 -- 2.509 47 2.96 4.35
394.13 0.925 4.66 -- 0.464 3.36 -- -- 0.562 23.9 2.574 46 3.06 4.32
576.45 1.12 4.7 -1.8 -- -- -- -- 0.29 -- -- -- -- --
542.31 1.09 4.65 -- 1.48 -- -- -- 0.457 4.11 -- -- -- --
407.09 0.94 4.64 -- -- 3.48 -- -- 0.545 -- 2.542 46 2.97 4.35
662.07 1.2 4.66 -- -- -- -- -- 0.49 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 272.93 wind 3.0 30 < th dose dependent rect. 3 4
3 276.39 wind 3.0 90 < th dose dependent rect. 3 2
6 281.01 temperature 30.0 720 > th dose dependent rect. 18 1
25 289.33 humidity 90.0 90 > th dose independent rect. 3 2
43 292.01 humidity 50.0 1440 < th dose independent rect. 16 1
44 292.49 humidity 90.0 90 > th dose dependent rect. 3 2
46 292.91 humidity 50.0 1440 < th dose dependent rect. 16 1
51 295.94 humidity 80.0 90 > th dose dependent rect. 3 4
52 296.03 wind 1.0 90 < th dose independent rect. 4 1
54 297.00 temperature 15.0 90 > th dose dependent rect. 3 3
56 298.76 humidity 70.0 270 > th dose dependent rect. 1 4
57 298.85 temperature 20.0 90 > th dose independent rect. 3 3
58 299.42 humidity 50.0 1440 > th dose independent rect. 16 1
59 299.45 temperature 25.0 270 < th dose independent rect. 1 4
62 300.04 temperature 25.0 90 < th dose independent rect. 3 2
72 302.51 temperature 10.0 270 > th dose dependent rect. 1 4
102 306.92 wind 9.0 270 < th dose dependent rect. 1 4
105 307.07 temperature 20.0 270 > th dose independent rect. 1 4
108 307.19 humidity 90.0 270 > th dose independent rect. 1 4
113 307.72 humidity 70.0 720 < th dose independent rect. 19 12
115 307.89 precipitation 0.1 90 < th dose independent rect. 3 16
116 307.89 precipitation 0.1 90 < th dose dependent rect. 3 16
128 309.12 humidity 70.0 720 < th dose independent rect. 19 1
145 309.51 precipitation 0.1 270 < th dose independent rect. 1 4
146 309.51 precipitation 0.1 270 < th dose dependent rect. 1 4
151 309.90 temperature 10.0 270 > th dose dependent rect. 24 6
152 310.48 temperature 20.0 10 > th dose independent rect. 3 4
153 310.51 temperature 30.0 720 > th dose independent rect. 18 1
174 310.98 humidity 70.0 720 < th dose dependent rect. 19 12
178 311.12 temperature 15.0 10 > th dose dependent rect. 3 3
179 311.24 precipitation 0.1 270 < th dose independent rect. 14 15
180 311.24 precipitation 0.1 270 < th dose dependent rect. 14 15
182 311.45 humidity 70.0 720 < th dose dependent rect. 19 1
194 311.48 humidity 70.0 720 < th dose dependent rect. 18 14
216 312.41 wind 9.0 270 < th dose independent rect. 5 20
234 312.97 precipitation 0.1 90 < th dose independent rect. 3 3
235 312.97 precipitation 0.1 90 < th dose dependent rect. 3 3
236 313.04 temperature 10.0 270 > th dose independent rect. 1 4
239 313.04 humidity 50.0 270 > th dose independent rect. 1 4
242 313.04 atmosphere 995.0 270 > th dose independent rect. 1 4
243 313.04 atmosphere 1010.0 270 < th dose independent rect. 1 4
245 313.04 radiation 20.0 270 < th dose independent rect. 1 4
248 313.04 temperature 10.0 270 > th dose independent rect. 5 20
249 313.06 wind 9.0 270 < th dose independent rect. 1 4
250 313.06 radiation 40.0 270 < th dose dependent rect. 1 4
256 313.13 radiation 1.0 270 < th dose independent rect. 1 4
282 314.24 radiation 40.0 270 < th dose independent rect. 14 15
283 314.34 humidity 70.0 720 > th dose independent rect. 19 8
295 314.91 wind 3.0 270 < th dose independent rect. 1 4
298 314.98 radiation 1.0 90 < th dose dependent rect. 19 8
299 314.99 temperature 10.0 90 > th dose independent rect. 19 8
300 314.99 temperature 30.0 90 < th dose independent rect. 19 8
301 314.99 humidity 50.0 90 > th dose independent rect. 19 8
303 314.99 atmosphere 995.0 90 > th dose independent rect. 19 8
304 314.99 radiation 1.0 90 < th dose independent rect. 19 8
309 314.99 wind 9.0 270 < th dose independent rect. 5 9
310 314.99 temperature 10.0 90 > th dose independent rect. 3 16
311 314.99 atmosphere 1015.0 90 < th dose independent rect. 3 16
318 315.17 wind 9.0 90 < th dose independent rect. 19 8
328 315.73 radiation 20.0 90 < th dose dependent rect. 3 4
331 315.81 wind 3.0 30 < th dose dependent rect. 3 9
332 315.87 temperature 20.0 90 > th dose independent rect. 3 16
336 316.16 temperature 10.0 270 > th dose independent rect. 5 9
337 316.16 atmosphere 995.0 270 > th dose independent rect. 5 9
338 316.16 atmosphere 1015.0 270 < th dose independent rect. 5 9
339 316.16 temperature 10.0 270 > th dose independent rect. 14 15
349 316.65 wind 9.0 90 < th dose independent rect. 3 3
350 316.65 temperature 10.0 90 > th dose independent rect. 3 3
353 316.65 humidity 50.0 90 > th dose independent rect. 3 3
356 316.65 atmosphere 995.0 90 > th dose independent rect. 3 3
357 316.65 atmosphere 1010.0 90 < th dose independent rect. 3 3
359 316.65 radiation 20.0 90 < th dose independent rect. 3 3
365 316.75 precipitation 0.1 270 < th dose independent rect. 5 9
368 316.75 precipitation 0.1 270 < th dose dependent rect. 5 9
382 317.21 precipitation 0.1 90 < th dose independent rect. 19 8
383 317.21 precipitation 0.1 90 < th dose dependent rect. 19 8
400 317.91 precipitation 0.1 270 < th dose independent rect. 5 20
401 317.91 precipitation 0.1 270 < th dose dependent rect. 5 20
415 318.32 precipitation 0.1 10 < th dose independent rect. 3 4
416 318.32 precipitation 0.1 10 < th dose dependent rect. 3 4
420 318.48 wind 9.0 270 < th dose independent rect. 14 15
435 318.88 wind 1.0 270 > th dose independent rect. 4 21
467 319.85 atmosphere 995.0 90 > th dose independent rect. 3 16
493 320.26 wind 9.0 90 < th dose independent rect. 3 16
533 321.70 atmosphere 1005.0 90 > th dose independent rect. 3 3
541 321.91 humidity 50.0 270 > th dose independent rect. 5 9
563 322.57 wind 3.0 30 < th dose dependent rect. 3 16
569 322.73 wind 1.0 270 > th dose independent rect. 2 2
585 322.95 atmosphere 1015.0 90 < th dose dependent rect. 3 2
626 323.30 atmosphere 995.0 270 > th dose independent rect. 5 20
627 323.30 temperature 10.0 270 > th dose independent rect. 4 22
689 324.25 wind 9.0 10 < th dose independent rect. 7 20
716 324.36 radiation 1.0 270 < th dose dependent rect. 5 20
777 325.07 wind 9.0 10 < th dose independent rect. 3 4
778 325.07 temperature 10.0 10 > th dose independent rect. 3 4
780 325.07 temperature 30.0 10 < th dose independent rect. 3 4
781 325.07 humidity 50.0 10 > th dose independent rect. 3 4
784 325.07 atmosphere 995.0 10 > th dose independent rect. 3 4
785 325.07 atmosphere 1015.0 10 < th dose independent rect. 3 4
786 325.07 radiation 20.0 10 < th dose independent rect. 3 4
789 325.07 temperature 10.0 10 > th dose independent rect. 7 20
811 325.49 precipitation 0.1 10 < th dose independent rect. 7 20
813 325.49 precipitation 0.1 10 < th dose dependent rect. 7 20
849 326.26 radiation 10.0 90 < th dose dependent rect. 3 6
859 326.61 temperature 30.0 1440 < th dose independent rect. 18 14
894 327.07 radiation 1.0 270 < th dose independent rect. 5 20
908 327.43 atmosphere 995.0 270 > th dose independent rect. 14 15
921 327.70 humidity 50.0 90 > th dose dependent rect. 19 8
953 328.42 wind 1.0 270 > th dose independent rect. 4 10
973 328.89 temperature 30.0 1440 < th dose independent rect. 18 3