BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0179700 Os03g0179700|Os03g0179700
(220 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G05910.1 | chr2:2258512-2259376 REVERSE LENGTH=192 193 7e-50
AT5G20640.1 | chr5:6984379-6985205 FORWARD LENGTH=216 189 1e-48
AT3G11740.1 | chr3:3712427-3713389 FORWARD LENGTH=195 71 5e-13
AT3G15810.1 | chr3:5348054-5349178 REVERSE LENGTH=221 67 6e-12
AT1G80120.1 | chr1:30139198-30139986 FORWARD LENGTH=211 67 6e-12
AT5G01750.2 | chr5:290034-291109 FORWARD LENGTH=218 67 8e-12
AT3G10986.1 | chr3:3444203-3445672 REVERSE LENGTH=198 62 2e-10
AT2G14560.1 | chr2:6214150-6215170 FORWARD LENGTH=208 54 6e-08
AT3G56180.1 | chr3:20844765-20845548 FORWARD LENGTH=205 52 3e-07
AT1G33840.1 | chr1:12283862-12285306 REVERSE LENGTH=231 50 1e-06
>AT2G05910.1 | chr2:2258512-2259376 REVERSE LENGTH=192
Length = 191
Score = 193 bits (490), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 97/197 (49%), Positives = 133/197 (67%), Gaps = 7/197 (3%)
Query: 25 LTPVVSKIFCSSSQAVLMVRRRPPTVNGGGFVVTDRDQRVVFSVDGCGIIGASGQLIVRD 84
+ VVSK++CSS + V++VRRRP VNGGGFVVTD +++VF +DGCG++G G+L++RD
Sbjct: 1 MKAVVSKLYCSSMEEVMVVRRRPHVVNGGGFVVTDYKEKIVFKIDGCGVLGTKGELVLRD 60
Query: 85 GDGTAILFIHKKGGVVQVLSINNWWKGYLMDYGEPSKLVFSFQDPK-PVLCMNGDVRVAV 143
DG +L IHKKGGVVQ LSI+N WKGY DY K VF+ +DPK + +R++V
Sbjct: 61 SDGNDLLLIHKKGGVVQALSIHNKWKGYSYDYQGSPKPVFTLRDPKHSCFSITSSIRISV 120
Query: 144 EPKGRKRHWDYEVIGSFSQRACTVRSRAGHVVAQIGVKGMLAGKDFYHVVVQPGYDQAFV 203
P + ++V G F R C++ G+V+AQ VK + +D Y VV +P D+AFV
Sbjct: 121 GPG----NCYFDVKGYFPDRDCSIVDSKGNVIAQ--VKEWIGSRDIYKVVTKPSVDKAFV 174
Query: 204 VGVIAILDNIHGESTRC 220
GVIA+LD I+GEST C
Sbjct: 175 FGVIAVLDYIYGESTSC 191
>AT5G20640.1 | chr5:6984379-6985205 FORWARD LENGTH=216
Length = 215
Score = 189 bits (479), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 98/215 (45%), Positives = 142/215 (66%), Gaps = 13/215 (6%)
Query: 19 MGAYAALT--PVVSKIFCSSSQAVLMVRRRPPTVNGGGFVVTDRDQRVVFSVDGCGIIGA 76
MGA ++ T PV+S+ + S S+ VL+VRRRPP VNGGGFVV++ Q VVF VDGCG++G
Sbjct: 1 MGARSSQTVDPVLSRRYSSESETVLVVRRRPPMVNGGGFVVSNSKQVVVFRVDGCGVLGT 60
Query: 77 SGQLIVRDGDGTAILFIHKKGGVVQVLS-INNWWKGYLMDYGEPSKLVFSFQDPK-PVLC 134
G+L++R+GDG +L I K GG+VQ L+ ++N W+G+ D +LVF+ +DPK L
Sbjct: 61 KGKLLLRNGDGNDLLLIRKMGGIVQALNMVHNKWEGFGYDNEGTERLVFTLKDPKDSCLV 120
Query: 135 MNGDVRVAVEPKGRK----RHWDYEVIGSFSQRACTVRSRAGHVVAQIGVKGMLA----- 185
N +++ V K K R+ E+ GSF++RAC + G +A++ ++ +
Sbjct: 121 QNSSIKILVHGKPPKISSTRNNYVEIKGSFAERACNIMDSDGKAIAKVRIEKEMEEMVGN 180
Query: 186 GKDFYHVVVQPGYDQAFVVGVIAILDNIHGESTRC 220
KD YHV+V+P DQ+F+VG+IAILD IHGEST C
Sbjct: 181 KKDLYHVIVKPNVDQSFIVGLIAILDYIHGESTIC 215
>AT3G11740.1 | chr3:3712427-3713389 FORWARD LENGTH=195
Length = 194
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 95/197 (48%), Gaps = 11/197 (5%)
Query: 28 VVSKIFCSSSQAVLMVRRRPPTVNGGGFVVTDRDQRVVFSVDGCGIIGASGQLIVRDGDG 87
+VS FC+ L + R+ T+ G F VTD + ++F V + S + I+ D
Sbjct: 3 IVSPNFCAPYPIELGIVRKVMTLTDGNFAVTDVNGNLLFKVKE-PLFSISDKRILLDAYD 61
Query: 88 TAILFIHKKGGVVQVLSINNWWKGYLMDYGEPSKLVFSFQDPKPVLCMNGDVRVAVEPKG 147
T IL + + +S+++ W Y + S L+++ + + M + + +
Sbjct: 62 TPILTLRENK-----VSLHDRWLVYRGKSTDQSDLLYTLKRSSMIQIMKPKLDIFLAHNK 116
Query: 148 RKRHWDYEVIGSFSQRACTVRS-RAGHVVAQIGVK----GMLAGKDFYHVVVQPGYDQAF 202
+ D+ V GS+ R+C V + ++ +VAQ+ K +L GK + V V P D AF
Sbjct: 117 EMKICDFHVKGSWIDRSCVVYAGKSDAIVAQMHKKHTAQSILIGKSNFSVTVYPNVDFAF 176
Query: 203 VVGVIAILDNIHGESTR 219
+V +I ILD+I+ E +
Sbjct: 177 IVSLIVILDDINREDSE 193
>AT3G15810.1 | chr3:5348054-5349178 REVERSE LENGTH=221
Length = 220
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 92/196 (46%), Gaps = 16/196 (8%)
Query: 28 VVSKIFCSSSQAVLMVRRRPPTVNGGGFVVTDRDQRVVFSVDGCG-IIGASGQLIVRDGD 86
VV K + L V + G GF D ++F VD G + ++++ D
Sbjct: 20 VVDKAYLYQEDKPLTVCKTSLFYTGDGFAAYDCRGDIIFRVDSYGPDTRDNDEIVLMDAT 79
Query: 87 GTAILFIHKKGGVVQVLSINNWWKGYLMDYGEPSKLVFSFQDPKPVLCMNGDVRVAVEPK 146
G +L + +K +++ W+G+L + E K +FS + + +V V +
Sbjct: 80 GKCLLTVKRKRP-----TLHQRWEGFLGERSEGQKPIFSVRRSSIIGRCTMEVEV-YDGT 133
Query: 147 GRKRHWDYEVIGSFSQRACTVRSRAGHVVAQIGVK-----GMLAGKDFYHVVVQPGYDQA 201
G + Y + G FSQR+C + VA+I K ++ G+D + + ++PG+D A
Sbjct: 134 GEE----YIIDGDFSQRSCLIYDTKKCTVAEIKRKVDASTNVMLGRDVFTLEIKPGFDGA 189
Query: 202 FVVGVIAILDNIHGES 217
F +G++ +LD I+G+
Sbjct: 190 FAMGLVVVLDQINGDD 205
>AT1G80120.1 | chr1:30139198-30139986 FORWARD LENGTH=211
Length = 210
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 93/198 (46%), Gaps = 17/198 (8%)
Query: 28 VVSKIFCSSSQAVLMVRRRPPTVNGGGFVVTDRDQRVVFSVDGCG--IIGASGQLIVRDG 85
+V F + L VR+ G GF V D +VF VD G + ++++ D
Sbjct: 6 LVDDEFIHGEERSLTVRKTSLFFAGDGFTVYDCKGSLVFRVDSYGGPNTRDTDEVVLMDA 65
Query: 86 DGTAILFIHKKGGVVQVLSINNWWKGYLMDYGEPSKLVFSFQDPKPVLCMNGDVRVAVEP 145
G +L + + + S+ W+GYL + + K +F + + G V VE
Sbjct: 66 HGRCLLTLRR-----KRPSLRRRWEGYLGERSDGQKPIFGVRRSSII----GRNSVTVEV 116
Query: 146 KGRKRHWDYEVIGSFSQRACTV-RSRAGHVVAQIGVK-----GMLAGKDFYHVVVQPGYD 199
G + +Y + GSF R CTV + VA+I K ++ GKD + + V+PG+D
Sbjct: 117 YGDYQCSEYLIEGSFGARNCTVVEAETRRKVAEIRRKVDASTNVMLGKDVFSLNVKPGFD 176
Query: 200 QAFVVGVIAILDNIHGES 217
AF +G++ +LD I+G+
Sbjct: 177 GAFAMGLVLVLDQIYGDD 194
>AT5G01750.2 | chr5:290034-291109 FORWARD LENGTH=218
Length = 217
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 105/212 (49%), Gaps = 17/212 (8%)
Query: 16 PYQMGAYAALTP-----VVSKIFCSSSQAVLMVRRRPPTVNGGGFVVTDRDQRVVFSVDG 70
P G A TP VV +C+ + + R+ ++ G FV+TD + ++F V
Sbjct: 10 PQGSGPSGAPTPQAGGVVVDPKYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKE 69
Query: 71 CGIIGASGQLIVRDGDGTAILFIHKKGGVVQVLSINNWWKGYLMDYGEPSKLVFSFQDPK 130
+ G + ++ DG GT ++ + +K ++S+++ W+ + + L+++ +
Sbjct: 70 -PVFGLHDKRVLLDGSGTPVVTLREK-----MVSMHDRWQVFRGGSTDQRDLLYTVKRSS 123
Query: 131 PVLCMNGDVRVAVEPKGRKRHWDYEVIGSFSQRACTVRS-RAGHVVAQI----GVKGMLA 185
+L + + V + ++ D+ V GS+ +R+C V + + +VAQ+ V+ +
Sbjct: 124 -MLQLKTKLDVFLGHNKDEKRCDFRVKGSWLERSCVVYAGESDAIVAQMHRKHTVQSVFL 182
Query: 186 GKDFYHVVVQPGYDQAFVVGVIAILDNIHGES 217
GKD + V V P D AF+ ++ ILD+++ E
Sbjct: 183 GKDNFSVTVYPNVDYAFIASLVVILDDVNRED 214
>AT3G10986.1 | chr3:3444203-3445672 REVERSE LENGTH=198
Length = 197
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 86/198 (43%), Gaps = 16/198 (8%)
Query: 25 LTPVVSKIFCSSSQAVLMVRRRPPTVNGGGFVVTDRDQRVVFSVDGCGIIGASGQLIVRD 84
+ VV ++FC+ L+VRRR ++ + V D ++F+VDG GI + ++RD
Sbjct: 1 MVSVVGEMFCNPYTTELVVRRRRESLKRERYDVFDLSNNLIFTVDG-GIWNIRRKRVLRD 59
Query: 85 GDGTAILFIHKKGGVVQVLSINNWWKGYLMDYGEPSKLVFSFQDPKPVLCMNGDVRVAVE 144
G +L + KG V + W+ Y D E L+FS ++P +L + V +
Sbjct: 60 AAGIPLLSMRTKGLVPMRYN----WEVYKGDSTESDNLLFSAREPN-LLSFKTSLDVTLP 114
Query: 145 PKGRKR-----HWDYEVIG-----SFSQRACTVRSRAGHVVAQIGVKGMLAGKDFYHVVV 194
P D++ G SF + VV G++ G + V V
Sbjct: 115 PDQSSTDISSVEPDFQTFGRYIGSSFKLFEPIHNTLLAEVVHDFTWGGLIKGSYSFKVRV 174
Query: 195 QPGYDQAFVVGVIAILDN 212
P D AFVV ++ I D+
Sbjct: 175 NPYVDFAFVVALLVITDD 192
>AT2G14560.1 | chr2:6214150-6215170 FORWARD LENGTH=208
Length = 207
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 88/192 (45%), Gaps = 12/192 (6%)
Query: 28 VVSKIFCSSSQAVLMVRRRPPTVNGGGFVVTDRDQRVVFSVDGCGIIGASGQLIVRDGDG 87
+V +CS + L + R+ + G FV+T D +++F V + G+ I+ D G
Sbjct: 7 IVGSKYCSPNPVGLAIVRKVMKITDGNFVITSADGKLLFKVKD-PLFSLHGKRILLDCSG 65
Query: 88 TAILFIHKKGGVVQVLSINNWWKGYLMDYGEPSKLVFSFQDPKPVLCMNGDVRVAVEPKG 147
+L + K ++++++ W+ + E L+++ + ++ + + V +
Sbjct: 66 AKVLTLRGK-----MMTMHDRWQVFRGGSTEEGALLYTVKRS-SMIQLAPKLEVFLANNV 119
Query: 148 RKRHWDYEVIGSFSQRACTV-----RSRAGHVVAQIGVKGMLAGKDFYHVVVQPGYDQAF 202
++ D++V G++ +C V + H+ + ++G GKD + V V D AF
Sbjct: 120 EEKICDFKVKGAWLDDSCVVYAGDSDTIIAHMCGKQTMRGFFFGKDHFSVTVDKNVDYAF 179
Query: 203 VVGVIAILDNIH 214
+ +I IL I
Sbjct: 180 IASLIVILVEIE 191
>AT3G56180.1 | chr3:20844765-20845548 FORWARD LENGTH=205
Length = 204
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 97/204 (47%), Gaps = 13/204 (6%)
Query: 13 KELPYQMGAYAALTPVVSKIFCSSSQAVLMVRRRPPTVNGGGFVVTDRDQRVVFSVDGCG 72
K+ +Q+G A VVS FC+ L+V+R+ + + V D ++ +DG
Sbjct: 5 KKTEWQVGDPA--ISVVSDQFCNPYPMDLLVKRKVQNFSKDYYEVFDPSGNLLLQIDGQA 62
Query: 73 IIGASGQLIVRDGDGTAILFIHKKGGVVQVLSINNWWKGYLMDYGEPSKLVFSFQDPKPV 132
G + + ++RD G IL + +KG L++ N W+ + + E L+F+ Q + V
Sbjct: 63 W-GFNRKRVMRDPAGFTILSMRQKG-----LALKNKWEVHGGESKEREDLLFTVQQSQAV 116
Query: 133 -LCMNGDVRVAVEPKGRKRHW-DYEVIGSFSQRACTVRSRAGHVVAQIGVK--GMLAGKD 188
L + DV + +K + D+ G +S + V +A ++A +G GK
Sbjct: 117 SLKTSVDVFLPENNNVKKTNTCDFHASGGYSNISFKV-FKADALIAGVGFTWGSFCKGKY 175
Query: 189 FYHVVVQPGYDQAFVVGVIAILDN 212
+ V V P D AF++ ++ ++D+
Sbjct: 176 NFKVRVNPEVDYAFIIALLVMVDD 199
>AT1G33840.1 | chr1:12283862-12285306 REVERSE LENGTH=231
Length = 230
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 89/189 (47%), Gaps = 14/189 (7%)
Query: 28 VVSKIFCSSSQAVLMVRRRPPTVNGGGFVVTDRDQRVVFSVDGCGIIGASGQLIVRDGDG 87
+V +CS L + R+ + G FV+T+ + ++F V + I+ DG G
Sbjct: 27 IVDPKYCSLHPVDLAIVRKVLKITDGNFVITNAEGNLLFKVKD-PFFSLHEKRILMDGFG 85
Query: 88 TAILFIHKKGGVVQVLSINNWWKGYLMDYGEPSKLVFSFQDPKPV-LCMNGDVRVAVEPK 146
T +L + K ++++++ W + E L+++ + V + DV +A +
Sbjct: 86 TKVLTLKGK-----IMTMHDRWLVFRGGSTEEVDLLYTVKRSNMVQITTKLDVFLADNIE 140
Query: 147 GRKRHWDYEVIGSFSQRACTVRSRAGHVV-AQI----GVKGMLAGKDFYHVVVQPGYDQA 201
+K DY + G + + +C V + ++ AQ+ ++ +L GKD + + V P D A
Sbjct: 141 QKK--CDYRLEGVWLETSCFVYAGDSDIILAQMREKKTMQSVLFGKDNFCLTVNPNVDYA 198
Query: 202 FVVGVIAIL 210
F+ +I IL
Sbjct: 199 FIASLIVIL 207
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.139 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,881,676
Number of extensions: 208714
Number of successful extensions: 396
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 383
Number of HSP's successfully gapped: 10
Length of query: 220
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 125
Effective length of database: 8,502,049
Effective search space: 1062756125
Effective search space used: 1062756125
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)