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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0446000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF567 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.22 (0.0218) R2 : 0.00532
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0718 (0.046) R2dN8 : 0.00687 R2N8 : 0.00532
σ : 0.411
deviance : 77.56
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
67.13 0.385 3.24 -0.0442 0.0485 1.16 -0.128 -3.7 -0.0588 22.6 1.001 4 -- --
73.11 0.398 3.22 0.00299 0.0234 0.577 -0.404 -- -0.0502 2.38 1.316 2 -- --
66.96 0.381 3.24 -0.0261 0.0558 1.16 -- -3.79 -0.0566 22.3 1.024 3 -- --
73.73 0.4 3.22 -0.00283 0.0324 0.517 -- -- -0.0602 1.9 1.3 2 -- --
67.07 0.381 3.24 -0.0492 -- 1.13 -- -3.79 -0.061 -- 1.039 3 -- --
76.4 0.41 3.22 0.0294 0.11 -- -0.331 -- -0.0717 2.4 -- -- -- --
76.79 0.41 3.22 0.0382 0.11 -- -- -- -0.0698 2.63 -- -- -- --
73.79 0.4 3.22 -0.00183 -- 0.529 -- -- -0.057 -- 1.337 2 -- --
73.7 0.4 3.22 -- 0.0378 0.518 -- -- -0.0576 23.5 1.326 2 -- --
77.51 0.411 3.22 0.0429 -- -- -- -- -0.067 -- -- -- -- --
76.83 0.41 3.22 -- 0.111 -- -- -- -0.0741 2.64 -- -- -- --
73.79 0.4 3.22 -- -- 0.529 -- -- -0.0568 -- 1.336 2 -- --
77.56 0.411 3.22 -- -- -- -- -- -0.0718 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 51.86 wind 1.0 30 < th dose dependent rect. 1 2
5 53.59 wind 1.0 10 < th dose dependent rect. 14 13
7 53.61 wind 1.0 10 < th dose dependent rect. 21 6
19 54.77 wind 1.0 10 < th dose independent rect. 1 2
21 55.19 wind 1.0 10 < th dose independent rect. 14 13
23 55.23 wind 1.0 10 < th dose independent rect. 17 10
25 55.26 wind 1.0 10 < th dose independent rect. 21 6
37 56.72 wind 1.0 10 < th dose dependent rect. 6 21
38 56.93 wind 1.0 10 < th dose dependent rect. 8 19
52 58.15 wind 1.0 10 < th dose independent rect. 6 21
53 58.28 wind 1.0 10 < th dose independent rect. 8 19
55 58.34 wind 7.0 1440 > th dose independent rect. 2 1
58 58.34 wind 7.0 1440 > th dose dependent rect. 2 1
99 60.89 temperature 20.0 30 > th dose dependent rect. 2 1
101 60.97 temperature 20.0 30 > th dose independent rect. 2 1
104 61.06 atmosphere 1005.0 30 > th dose dependent rect. 2 1
110 61.22 humidity 80.0 30 > th dose independent rect. 2 1
118 61.32 atmosphere 1005.0 30 > th dose independent rect. 2 1
128 61.37 humidity 80.0 30 > th dose dependent rect. 2 1
133 61.40 humidity 50.0 30 > th dose dependent rect. 2 1
137 61.43 wind 9.0 30 < th dose independent rect. 2 1
138 61.43 temperature 10.0 30 > th dose independent rect. 2 1
140 61.43 temperature 30.0 30 < th dose independent rect. 2 1
141 61.43 humidity 50.0 30 > th dose independent rect. 2 1
144 61.43 atmosphere 995.0 30 > th dose independent rect. 2 1
145 61.43 atmosphere 1010.0 30 < th dose independent rect. 2 1
147 61.43 radiation 1.0 30 < th dose independent rect. 2 1
152 61.43 precipitation 0.1 30 < th dose independent rect. 2 1
153 61.43 temperature 10.0 30 > th dose independent rect. 3 23
154 61.43 radiation 1.0 30 < th dose dependent rect. 2 1
159 61.43 precipitation 0.1 30 < th dose dependent rect. 2 1
165 61.54 wind 1.0 10 < th dose independent sin 17 NA
167 61.59 atmosphere 1015.0 30 < th dose dependent rect. 2 1
172 61.78 wind 1.0 10 < th dose dependent sin 17 NA
204 62.28 temperature 30.0 30 < th dose dependent rect. 2 1
208 62.39 wind 9.0 30 < th dose independent rect. 3 23
220 62.78 wind 1.0 30 > th dose independent rect. 2 1
229 62.95 wind 1.0 10 > th dose independent sin 17 NA
277 63.44 humidity 90.0 10 > th dose independent rect. 24 3
350 65.28 atmosphere 995.0 30 > th dose independent rect. 3 22
437 65.88 precipitation 0.1 30 < th dose independent rect. 3 22
440 65.88 precipitation 0.1 30 < th dose dependent rect. 3 22
507 66.59 wind 9.0 4320 < th dose independent rect. 2 2
509 66.60 temperature 10.0 1440 > th dose independent rect. 2 2
512 66.60 temperature 30.0 1440 < th dose independent rect. 2 2
516 66.60 humidity 50.0 1440 > th dose independent rect. 2 2
525 66.60 atmosphere 995.0 1440 > th dose independent rect. 2 2
526 66.60 radiation 1.0 1440 < th dose independent rect. 2 2
546 66.60 temperature 10.0 1440 > th dose independent rect. 4 22
549 66.60 radiation 1.0 1440 < th dose dependent rect. 2 2
596 67.07 humidity 50.0 30 > th dose independent rect. 3 22
701 68.40 atmosphere 1015.0 30 < th dose independent rect. 3 22
767 68.65 wind 9.0 30 < th dose dependent rect. 3 22
770 68.66 temperature 10.0 30 > th dose dependent rect. 3 22
813 69.04 wind 1.0 270 < th dose dependent rect. 22 1
877 69.48 wind 1.0 10 < th dose dependent rect. 24 12
894 69.57 wind 1.0 10 < th dose independent rect. 24 12
968 69.73 wind 1.0 10 > th dose independent rect. 3 23
993 69.78 humidity 90.0 90 < th dose independent rect. 1 2