BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0446000 Os04g0446000|Os04g0446000
(199 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G05910.1 | chr2:2258512-2259376 REVERSE LENGTH=192 206 9e-54
AT5G20640.1 | chr5:6984379-6985205 FORWARD LENGTH=216 182 1e-46
AT3G11740.1 | chr3:3712427-3713389 FORWARD LENGTH=195 66 1e-11
AT5G01750.2 | chr5:290034-291109 FORWARD LENGTH=218 64 5e-11
AT1G80120.1 | chr1:30139198-30139986 FORWARD LENGTH=211 58 4e-09
AT3G15810.1 | chr3:5348054-5349178 REVERSE LENGTH=221 57 5e-09
AT3G10986.1 | chr3:3444203-3445672 REVERSE LENGTH=198 55 3e-08
>AT2G05910.1 | chr2:2258512-2259376 REVERSE LENGTH=192
Length = 191
Score = 206 bits (523), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 101/194 (52%), Positives = 134/194 (69%), Gaps = 7/194 (3%)
Query: 7 VVSKIFCSSTLTTLMIRRRPTVVNGGGFVVTDLGNNVVFIVDGCGILGSKGELLVKDGDG 66
VVSK++CSS +++RRRP VVNGGGFVVTD +VF +DGCG+LG+KGEL+++D DG
Sbjct: 4 VVSKLYCSSMEEVMVVRRRPHVVNGGGFVVTDYKEKIVFKIDGCGVLGTKGELVLRDSDG 63
Query: 67 EPILFISRKGGIIQALSTWNKWNGYSMDYQGKKKLIFSLSDPK-SCIAKGAPIRIHIEPK 125
+L I +KGG++QALS NKW GYS DYQG K +F+L DPK SC + + IRI + P
Sbjct: 64 NDLLLIHKKGGVVQALSIHNKWKGYSYDYQGSPKPVFTLRDPKHSCFSITSSIRISVGP- 122
Query: 126 RHCKNWDFEISGSFADRNCTITDCTGTIVGQMGKTEQIGTNDFYHVVVQSGCDKAFIIGA 185
N F++ G F DR+C+I D G ++ Q+ E IG+ D Y VV + DKAF+ G
Sbjct: 123 ---GNCYFDVKGYFPDRDCSIVDSKGNVIAQV--KEWIGSRDIYKVVTKPSVDKAFVFGV 177
Query: 186 MAVLDNIHGESTRC 199
+AVLD I+GEST C
Sbjct: 178 IAVLDYIYGESTSC 191
>AT5G20640.1 | chr5:6984379-6985205 FORWARD LENGTH=216
Length = 215
Score = 182 bits (461), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 94/205 (45%), Positives = 138/205 (67%), Gaps = 11/205 (5%)
Query: 6 PVVSKIFCSSTLTTLMIRRRPTVVNGGGFVVTDLGNNVVFIVDGCGILGSKGELLVKDGD 65
PV+S+ + S + T L++RRRP +VNGGGFVV++ VVF VDGCG+LG+KG+LL+++GD
Sbjct: 11 PVLSRRYSSESETVLVVRRRPPMVNGGGFVVSNSKQVVVFRVDGCGVLGTKGKLLLRNGD 70
Query: 66 GEPILFISRKGGIIQALS-TWNKWNGYSMDYQGKKKLIFSLSDPK-SCIAKGAPIRI--H 121
G +L I + GGI+QAL+ NKW G+ D +G ++L+F+L DPK SC+ + + I+I H
Sbjct: 71 GNDLLLIRKMGGIVQALNMVHNKWEGFGYDNEGTERLVFTLKDPKDSCLVQNSSIKILVH 130
Query: 122 IEPKR--HCKNWDFEISGSFADRNCTITDCTGTIVGQM----GKTEQIGT-NDFYHVVVQ 174
+P + +N EI GSFA+R C I D G + ++ E +G D YHV+V+
Sbjct: 131 GKPPKISSTRNNYVEIKGSFAERACNIMDSDGKAIAKVRIEKEMEEMVGNKKDLYHVIVK 190
Query: 175 SGCDKAFIIGAMAVLDNIHGESTRC 199
D++FI+G +A+LD IHGEST C
Sbjct: 191 PNVDQSFIVGLIAILDYIHGESTIC 215
>AT3G11740.1 | chr3:3712427-3713389 FORWARD LENGTH=195
Length = 194
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 89/200 (44%), Gaps = 13/200 (6%)
Query: 5 MPVVSKIFCSSTLTTLMIRRRPTVVNGGGFVVTDLGNNVVFIVDGCGILGSKGELLVKDG 64
M +VS FC+ L I R+ + G F VTD+ N++F V S +L+ D
Sbjct: 1 MAIVSPNFCAPYPIELGIVRKVMTLTDGNFAVTDVNGNLLFKVKEPLFSISDKRILL-DA 59
Query: 65 DGEPILFISRKGGIIQALSTWNKWNGYSMDYQGKKKLIFSLSDPKSCIAKGAPIRIHIEP 124
PIL + +S ++W Y + L+++L + I +
Sbjct: 60 YDTPILTLRE-----NKVSLHDRWLVYRGKSTDQSDLLYTLKRSSMIQIMKPKLDIFLAH 114
Query: 125 KRHCKNWDFEISGSFADRNCTI-TDCTGTIVGQMGK--TEQ---IGTNDFYHVVVQSGCD 178
+ K DF + GS+ DR+C + + IV QM K T Q IG ++F V V D
Sbjct: 115 NKEMKICDFHVKGSWIDRSCVVYAGKSDAIVAQMHKKHTAQSILIGKSNF-SVTVYPNVD 173
Query: 179 KAFIIGAMAVLDNIHGESTR 198
AFI+ + +LD+I+ E +
Sbjct: 174 FAFIVSLIVILDDINREDSE 193
>AT5G01750.2 | chr5:290034-291109 FORWARD LENGTH=218
Length = 217
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 91/194 (46%), Gaps = 12/194 (6%)
Query: 7 VVSKIFCSSTLTTLMIRRRPTVVNGGGFVVTDLGNNVVFIVDGCGILGSKGELLVKDGDG 66
VV +C+ + I R+ + G FV+TD+ N++F V + G + ++ DG G
Sbjct: 27 VVDPKYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKE-PVFGLHDKRVLLDGSG 85
Query: 67 EPILFISRKGGIIQALSTWNKWNGYSMDYQGKKKLIFSLSDPKSCIAKGAPIRIHIEPKR 126
P++ + K ++ W + G S D ++ L++++ S + + + + +
Sbjct: 86 TPVVTLREK--MVSMHDRWQVFRGGSTD---QRDLLYTVKR-SSMLQLKTKLDVFLGHNK 139
Query: 127 HCKNWDFEISGSFADRNCTI-TDCTGTIVGQMGKTEQIGT----NDFYHVVVQSGCDKAF 181
K DF + GS+ +R+C + + IV QM + + + D + V V D AF
Sbjct: 140 DEKRCDFRVKGSWLERSCVVYAGESDAIVAQMHRKHTVQSVFLGKDNFSVTVYPNVDYAF 199
Query: 182 IIGAMAVLDNIHGE 195
I + +LD+++ E
Sbjct: 200 IASLVVILDDVNRE 213
>AT1G80120.1 | chr1:30139198-30139986 FORWARD LENGTH=211
Length = 210
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 88/197 (44%), Gaps = 17/197 (8%)
Query: 7 VVSKIFCSSTLTTLMIRRRPTVVNGGGFVVTDLGNNVVFIVDGCGILGSKG--ELLVKDG 64
+V F +L +R+ G GF V D ++VF VD G ++ E+++ D
Sbjct: 6 LVDDEFIHGEERSLTVRKTSLFFAGDGFTVYDCKGSLVFRVDSYGGPNTRDTDEVVLMDA 65
Query: 65 DGEPILFISRKGGIIQALSTWNKWNGYSMDYQGKKKLIFSLSDPKSCIAKGAPIRIHIEP 124
G +L + + S +W GY + +K IF + +S I + + +
Sbjct: 66 HGRCLLTLR-----RKRPSLRRRWEGYLGERSDGQKPIFGVR--RSSIIGRNSVTVEVYG 118
Query: 125 KRHCKNWDFEISGSFADRNCTITDC-TGTIVGQMGKTEQIGTN-----DFYHVVVQSGCD 178
C ++ I GSF RNCT+ + T V ++ + TN D + + V+ G D
Sbjct: 119 DYQCS--EYLIEGSFGARNCTVVEAETRRKVAEIRRKVDASTNVMLGKDVFSLNVKPGFD 176
Query: 179 KAFIIGAMAVLDNIHGE 195
AF +G + VLD I+G+
Sbjct: 177 GAFAMGLVLVLDQIYGD 193
>AT3G15810.1 | chr3:5348054-5349178 REVERSE LENGTH=221
Length = 220
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 84/196 (42%), Gaps = 16/196 (8%)
Query: 7 VVSKIFCSSTLTTLMIRRRPTVVNGGGFVVTDLGNNVVFIVDGCGI-LGSKGELLVKDGD 65
VV K + L + + G GF D +++F VD G E+++ D
Sbjct: 20 VVDKAYLYQEDKPLTVCKTSLFYTGDGFAAYDCRGDIIFRVDSYGPDTRDNDEIVLMDAT 79
Query: 66 GEPILFISRKGGIIQALSTWNKWNGYSMDYQGKKKLIFSLSDPKSCIAKGAPIRIHIEPK 125
G+ +L + RK + +W G+ + +K IFS+ +S I + + +
Sbjct: 80 GKCLLTVKRKRPTLH-----QRWEGFLGERSEGQKPIFSVR--RSSIIGRCTMEVEV--- 129
Query: 126 RHCKNWDFEISGSFADRNCTITDCTGTIVGQMGKTEQIGTN-----DFYHVVVQSGCDKA 180
++ I G F+ R+C I D V ++ + TN D + + ++ G D A
Sbjct: 130 YDGTGEEYIIDGDFSQRSCLIYDTKKCTVAEIKRKVDASTNVMLGRDVFTLEIKPGFDGA 189
Query: 181 FIIGAMAVLDNIHGES 196
F +G + VLD I+G+
Sbjct: 190 FAMGLVVVLDQINGDD 205
>AT3G10986.1 | chr3:3444203-3445672 REVERSE LENGTH=198
Length = 197
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 86/195 (44%), Gaps = 16/195 (8%)
Query: 7 VVSKIFCSSTLTTLMIRRRPTVVNGGGFVVTDLGNNVVFIVDGCGILGSKGELLVKDGDG 66
VV ++FC+ T L++RRR + + V DL NN++F VDG GI + + +++D G
Sbjct: 4 VVGEMFCNPYTTELVVRRRRESLKRERYDVFDLSNNLIFTVDG-GIWNIRRKRVLRDAAG 62
Query: 67 EPILFISRKGGIIQALSTWNKWNGYSMDYQGKKKLIFSLSDPKSCIAKGAPIRIHIEPKR 126
P+L + KG + + W Y D L+FS +P + ++ + + + P +
Sbjct: 63 IPLLSMRTKGLVPMRYN----WEVYKGDSTESDNLLFSAREP-NLLSFKTSLDVTLPPDQ 117
Query: 127 HCKNW-----DFEISGSFADRNCTITD-----CTGTIVGQMGKTEQIGTNDFYHVVVQSG 176
+ DF+ G + + + + +V I + + V V
Sbjct: 118 SSTDISSVEPDFQTFGRYIGSSFKLFEPIHNTLLAEVVHDFTWGGLIKGSYSFKVRVNPY 177
Query: 177 CDKAFIIGAMAVLDN 191
D AF++ + + D+
Sbjct: 178 VDFAFVVALLVITDD 192
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.139 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,676,920
Number of extensions: 206856
Number of successful extensions: 343
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 332
Number of HSP's successfully gapped: 7
Length of query: 199
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 106
Effective length of database: 8,556,881
Effective search space: 907029386
Effective search space used: 907029386
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)