BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0446000 Os04g0446000|Os04g0446000
(199 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0446000 Protein of unknown function DUF567 family protein 409 e-115
Os03g0179700 Protein of unknown function DUF567 family protein 239 1e-63
>Os04g0446000 Protein of unknown function DUF567 family protein
Length = 199
Score = 409 bits (1051), Expect = e-115, Method: Compositional matrix adjust.
Identities = 199/199 (100%), Positives = 199/199 (100%)
Query: 1 MDNSMPVVSKIFCSSTLTTLMIRRRPTVVNGGGFVVTDLGNNVVFIVDGCGILGSKGELL 60
MDNSMPVVSKIFCSSTLTTLMIRRRPTVVNGGGFVVTDLGNNVVFIVDGCGILGSKGELL
Sbjct: 1 MDNSMPVVSKIFCSSTLTTLMIRRRPTVVNGGGFVVTDLGNNVVFIVDGCGILGSKGELL 60
Query: 61 VKDGDGEPILFISRKGGIIQALSTWNKWNGYSMDYQGKKKLIFSLSDPKSCIAKGAPIRI 120
VKDGDGEPILFISRKGGIIQALSTWNKWNGYSMDYQGKKKLIFSLSDPKSCIAKGAPIRI
Sbjct: 61 VKDGDGEPILFISRKGGIIQALSTWNKWNGYSMDYQGKKKLIFSLSDPKSCIAKGAPIRI 120
Query: 121 HIEPKRHCKNWDFEISGSFADRNCTITDCTGTIVGQMGKTEQIGTNDFYHVVVQSGCDKA 180
HIEPKRHCKNWDFEISGSFADRNCTITDCTGTIVGQMGKTEQIGTNDFYHVVVQSGCDKA
Sbjct: 121 HIEPKRHCKNWDFEISGSFADRNCTITDCTGTIVGQMGKTEQIGTNDFYHVVVQSGCDKA 180
Query: 181 FIIGAMAVLDNIHGESTRC 199
FIIGAMAVLDNIHGESTRC
Sbjct: 181 FIIGAMAVLDNIHGESTRC 199
>Os03g0179700 Protein of unknown function DUF567 family protein
Length = 220
Score = 239 bits (609), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 109/194 (56%), Positives = 138/194 (71%)
Query: 6 PVVSKIFCSSTLTTLMIRRRPTVVNGGGFVVTDLGNNVVFIVDGCGILGSKGELLVKDGD 65
PVVSKIFCSS+ LM+RRRP VNGGGFVVTD VVF VDGCGI+G+ G+L+V+DGD
Sbjct: 27 PVVSKIFCSSSQAVLMVRRRPPTVNGGGFVVTDRDQRVVFSVDGCGIIGASGQLIVRDGD 86
Query: 66 GEPILFISRKGGIIQALSTWNKWNGYSMDYQGKKKLIFSLSDPKSCIAKGAPIRIHIEPK 125
G ILFI +KGG++Q LS N W GY MDY KL+FS DPK + +R+ +EPK
Sbjct: 87 GTAILFIHKKGGVVQVLSINNWWKGYLMDYGEPSKLVFSFQDPKPVLCMNGDVRVAVEPK 146
Query: 126 RHCKNWDFEISGSFADRNCTITDCTGTIVGQMGKTEQIGTNDFYHVVVQSGCDKAFIIGA 185
++WD+E+ GSF+ R CT+ G +V Q+G + DFYHVVVQ G D+AF++G
Sbjct: 147 GRKRHWDYEVIGSFSQRACTVRSRAGHVVAQIGVKGMLAGKDFYHVVVQPGYDQAFVVGV 206
Query: 186 MAVLDNIHGESTRC 199
+A+LDNIHGESTRC
Sbjct: 207 IAILDNIHGESTRC 220
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.139 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,327,609
Number of extensions: 325479
Number of successful extensions: 584
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 586
Number of HSP's successfully gapped: 2
Length of query: 199
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 103
Effective length of database: 12,023,257
Effective search space: 1238395471
Effective search space used: 1238395471
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 153 (63.5 bits)