BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0167500 Os03g0167500|AK070468
(501 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0167500 Similar to ReMembR-H2 protein JR702 (Fragment) 892 0.0
Os08g0104300 Similar to RING finger family protein 517 e-147
Os04g0419500 Zinc finger, RING-type domain containing protein 70 3e-12
Os02g0676500 Zinc finger, RING-type domain containing protein 66 7e-11
>Os03g0167500 Similar to ReMembR-H2 protein JR702 (Fragment)
Length = 501
Score = 892 bits (2304), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/501 (88%), Positives = 442/501 (88%)
Query: 1 MNRRRTMLLLICLCATFCLMTQLGAANVVLMGTNLTLSFDDVEASFAPGVKGSGFEGVVY 60
MNRRRTMLLLICLCATFCLMTQLGAANVVLMGTNLTLSFDDVEASFAPGVKGSGFEGVVY
Sbjct: 1 MNRRRTMLLLICLCATFCLMTQLGAANVVLMGTNLTLSFDDVEASFAPGVKGSGFEGVVY 60
Query: 61 TAEPLDACSPLTSKAEKGPPSPFALIIRGGCTFDEKVKNAQDAGFKAAIVYDNENSGVLI 120
TAEPLDACSPLTSKAEKGPPSPFALIIRGGCTFDEKVKNAQDAGFKAAIVYDNENSGVLI
Sbjct: 61 TAEPLDACSPLTSKAEKGPPSPFALIIRGGCTFDEKVKNAQDAGFKAAIVYDNENSGVLI 120
Query: 121 SMAGSSGGIHIYAVFISKASGEVLKKFSGHTDVEVWILPAFENSAWSIMAISFISLLAMS 180
SMAGSSGGIHIYAVFISKASGEVLKKFSGHTDVEVWILPAFENSAWSIMAISFISLLAMS
Sbjct: 121 SMAGSSGGIHIYAVFISKASGEVLKKFSGHTDVEVWILPAFENSAWSIMAISFISLLAMS 180
Query: 181 AVLATCFFVXXXXXXXXXXXXXEAREFHGMSSQLVKAMPSLIFTKVQEDNCTSSMCAICL 240
AVLATCFFV EAREFHGMSSQLVKAMPSLIFTKVQEDNCTSSMCAICL
Sbjct: 181 AVLATCFFVRRHHIRRDRPRIPEAREFHGMSSQLVKAMPSLIFTKVQEDNCTSSMCAICL 240
Query: 241 EDYNVGEKLRVLPCRHKFHAACVDLWLTTWRTFCPVCKRDASTGIPDPPASETTPLLSSA 300
EDYNVGEKLRVLPCRHKFHAACVDLWLTTWRTFCPVCKRDASTGIPDPPASETTPLLSSA
Sbjct: 241 EDYNVGEKLRVLPCRHKFHAACVDLWLTTWRTFCPVCKRDASTGIPDPPASETTPLLSSA 300
Query: 301 VRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIYAASGTPNSPNPIRSFTNSTAMSISR 360
VRL IYAASGTPNSPNPIRSFTNSTAMSISR
Sbjct: 301 VRLPSQSSSFRSSVAASPPRPISRRPSSQSISRIYAASGTPNSPNPIRSFTNSTAMSISR 360
Query: 361 SNVDLSNMSSRPRASHLASAHSLVGSHLSPPINISYYLGSSSQHRSYLRRCGESGPSLST 420
SNVDLSNMSSRPRASHLASAHSLVGSHLSPPINISYYLGSSSQHRSYLRRCGESGPSLST
Sbjct: 361 SNVDLSNMSSRPRASHLASAHSLVGSHLSPPINISYYLGSSSQHRSYLRRCGESGPSLST 420
Query: 421 MAPQSPQQSQLRHGGESDLNLAGASSGQSFRQSYLRHCADSEVNLAGASSGQSFRQSYLR 480
MAPQSPQQSQLRHGGESDLNLAGASSGQSFRQSYLRHCADSEVNLAGASSGQSFRQSYLR
Sbjct: 421 MAPQSPQQSQLRHGGESDLNLAGASSGQSFRQSYLRHCADSEVNLAGASSGQSFRQSYLR 480
Query: 481 HCXXXXXXXXXXXXXXXXPGC 501
HC PGC
Sbjct: 481 HCADSDASLSAMASAQSLPGC 501
>Os08g0104300 Similar to RING finger family protein
Length = 495
Score = 517 bits (1332), Expect = e-147, Method: Compositional matrix adjust.
Identities = 271/451 (60%), Positives = 300/451 (66%), Gaps = 34/451 (7%)
Query: 11 ICLCATFCLMTQLGAANVVLMGTNLTLSFDDVEASFAPGVKGSGFEGVVYTAEPLDACSP 70
+ CA CLM Q GA NVVL+ N TLSFDDVEA+F P VK SG G +Y EPLDACSP
Sbjct: 45 LLFCAVICLMAQQGACNVVLIANNTTLSFDDVEATFTPEVKDSGVNGAIYAVEPLDACSP 104
Query: 71 LTSKAEKGPPSPFALIIRGGCTFDEKVKNAQDAGFKAAIVYDNENSGVLISMAGSSGGIH 130
L KA GP SPFAL+IRGGC FD+KV+NAQ+AGFKA IVYD+E+SGVL+SMAGSS GI+
Sbjct: 105 LRKKAANGPVSPFALVIRGGCQFDDKVRNAQNAGFKAVIVYDDEDSGVLVSMAGSSSGIY 164
Query: 131 IYAVFISKASGEVLKKFSGHTDVEVWILPAFENSAWSIMAISFISLLAMSAVLATCFFVX 190
IYAVF+SKASGEVLKK+SG +DVEVWILP +ENSAWSIMAISF SLLAM+AVLATCFFV
Sbjct: 165 IYAVFLSKASGEVLKKYSGQSDVEVWILPVYENSAWSIMAISFTSLLAMAAVLATCFFVR 224
Query: 191 XXXXXXXXXXXXEAREFHGMSSQLVKAMPSLIFTKVQEDNCTSSMCAICLEDYNVGEKLR 250
REFHGMSSQLVKAMPSLIFTKVQEDN TSS CAICLEDY+ GEKLR
Sbjct: 225 RHQIRRDRGRIPVTREFHGMSSQLVKAMPSLIFTKVQEDNSTSSSCAICLEDYSFGEKLR 284
Query: 251 VLPCRHKFHAACVDLWLTTWRTFCPVCKRDASTGIPDPPASETTPLLSSAVRLXXXXXXX 310
VLPCRHKFHA CVD+WLT+W+TFCPVCKRDAS G PPASE+TPLLSS + L
Sbjct: 285 VLPCRHKFHATCVDMWLTSWKTFCPVCKRDASAGTSKPPASESTPLLSSVIHLSAESTAL 344
Query: 311 XXXXXXXXXX---XXXXXXXXXXXXXIYAASGTPNSPNPIRSFTNSTAMSISRSNVDLSN 367
Y+ S P + N R +TNS +S SRSNVDL+N
Sbjct: 345 SSFRSTVAVSPPRPIRRHPSSQSTSRAYSISSAPRNYNLQRYYTNSPYISTSRSNVDLAN 404
Query: 368 MSSR-PRASHLASAHSLVGSHLSPPINI------------------------------SY 396
MSS+ H AS HSL HLS PINI SY
Sbjct: 405 MSSQWSHTPHQASMHSLRSGHLSLPINIRYTIPHVSRSDYGSASLGLSHDSCSHHGSPSY 464
Query: 397 YLGSSSQHRSYLRRCGESGPSLSTMAPQSPQ 427
Y S Q RSYL ESGPSLSTM QSPQ
Sbjct: 465 YHSSLGQQRSYLMHRTESGPSLSTMVLQSPQ 495
>Os04g0419500 Zinc finger, RING-type domain containing protein
Length = 202
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 209 GMSSQLVKAMPSLIFTKVQEDNCTSSMCAICLEDYNVGEKLRVLP-CRHKFHAACVDLWL 267
G+ + +++MP L+++ + N S MCAICL D+ GE +RVLP C H FH C+D WL
Sbjct: 89 GLRRKALRSMPILLYSTGLKLNTVSPMCAICLSDFEDGEHVRVLPKCNHGFHVRCIDRWL 148
Query: 268 TTWRTFCPVCKR 279
R+ CP C++
Sbjct: 149 LA-RSTCPTCRQ 159
>Os02g0676500 Zinc finger, RING-type domain containing protein
Length = 210
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Query: 209 GMSSQLVKAMPSLIFTKVQEDNCTSSMCAICLEDYNVGEKLRVLP-CRHKFHAACVDLWL 267
G+ +V A+P++ ++ + + C+ICL +YN E LR++P CRH FH +C+D+WL
Sbjct: 82 GLEPFVVAAIPTMKYSYEAFQSKDDAQCSICLGEYNEKEILRIMPKCRHNFHLSCIDVWL 141
Query: 268 TTWRTFCPVCK---RDASTGIPDPPASETTPLLSS 299
+T CP+C+ +D +G P + P L S
Sbjct: 142 QK-QTTCPICRISLKDLPSGKPAESPVRSLPQLFS 175
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.131 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,570,027
Number of extensions: 619530
Number of successful extensions: 2284
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 2400
Number of HSP's successfully gapped: 6
Length of query: 501
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 396
Effective length of database: 11,553,331
Effective search space: 4575119076
Effective search space used: 4575119076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)