Os03g0167500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to ReMembR-H2 protein JR702 (Fragment).
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Os03g0167500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to ReMembR-H2 protein JR702 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68.11 | 0.388 | 8.78 | -0.222 | 0.254 | 2.16 | 1.55 | 2.4 | 0.0438 | 17.6 | 0.3583 | 1482 | -- | -- |
| 68.27 | 0.385 | 8.75 | 0.0219 | 0.298 | 1.87 | 1.72 | -- | 0.108 | 16.9 | 0.36 | 1531 | -- | -- |
| 72.39 | 0.396 | 8.78 | -0.32 | 0.314 | 2.22 | -- | 3.05 | 0.00906 | 19 | 0.3508 | 1480 | -- | -- |
| 73.75 | 0.4 | 8.78 | -0.021 | 0.327 | 1.58 | -- | -- | 0.0476 | 18.7 | 0.35 | 1513 | -- | -- |
| 77.5 | 0.41 | 8.78 | -0.222 | -- | 2.3 | -- | 2.81 | 0.0312 | -- | 0.2767 | 1487 | -- | -- |
| 97.06 | 0.462 | 8.79 | -0.362 | 0.48 | -- | 0.303 | -- | -0.119 | 20.9 | -- | -- | -- | -- |
| 97.23 | 0.462 | 8.79 | -0.374 | 0.477 | -- | -- | -- | -0.12 | 21.3 | -- | -- | -- | -- |
| 79.91 | 0.416 | 8.78 | -0.0353 | -- | 1.66 | -- | -- | 0.0337 | -- | 0.35 | 1506 | -- | -- |
| 73.46 | 0.399 | 8.78 | -- | 0.351 | 1.59 | -- | -- | 0.0445 | 19.5 | 0.3572 | 1506 | -- | -- |
| 110.52 | 0.491 | 8.78 | -0.372 | -- | -- | -- | -- | -0.122 | -- | -- | -- | -- | -- |
| 100.93 | 0.47 | 8.78 | -- | 0.477 | -- | -- | -- | -0.0787 | 21.3 | -- | -- | -- | -- |
| 79.33 | 0.415 | 8.74 | -- | -- | 1.71 | -- | -- | 0.0813 | -- | 0.3562 | 1505 | -- | -- |
| 114.16 | 0.499 | 8.77 | -- | -- | -- | -- | -- | -0.081 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 65.73 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 3 | 65.81 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 4 | 65.83 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 2 |
| 5 | 65.89 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 6 |
| 7 | 65.90 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 4 |
| 10 | 65.93 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 17 | 66.25 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 2 |
| 21 | 66.50 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 22 | 66.61 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 5 |
| 25 | 66.69 | wind | 5 | 43200 | > th | dose dependent | rect. | 12 | 8 |
| 29 | 66.71 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 5 |
| 36 | 66.84 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 7 |
| 39 | 66.89 | wind | 5 | 43200 | < th | dose independent | rect. | 10 | 7 |
| 51 | 67.16 | wind | 5 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 72 | 67.52 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 8 |
| 89 | 67.74 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 90 | 67.76 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 2 |
| 102 | 67.88 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 11 |
| 112 | 67.96 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 7 |
| 124 | 68.09 | wind | 5 | 43200 | < th | dose independent | rect. | 10 | 11 |
| 139 | 68.18 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 3 |
| 147 | 68.25 | temperature | 20 | 720 | > th | dose dependent | sin | 4 | NA |
| 148 | 68.27 | wind | 5 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 177 | 68.43 | radiation | 30 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 186 | 68.48 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 199 | 68.53 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 202 | 68.54 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 3 |
| 203 | 68.55 | wind | 5 | 43200 | > th | dose dependent | sin | 20 | NA |
| 221 | 68.66 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 10 |
| 223 | 68.67 | wind | 7 | 43200 | < th | dose independent | sin | 21 | NA |
| 229 | 68.69 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 14 |
| 230 | 68.69 | temperature | 20 | 720 | > th | dose dependent | rect. | 24 | 15 |
| 233 | 68.70 | wind | 7 | 43200 | < th | dose independent | rect. | 7 | 12 |
| 269 | 68.79 | wind | 5 | 43200 | > th | dose independent | sin | 21 | NA |
| 281 | 68.81 | temperature | 20 | 720 | > th | dose dependent | rect. | 2 | 12 |
| 319 | 68.92 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 19 |
| 326 | 68.94 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 12 |
| 328 | 68.95 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 329 | 68.95 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 3 |
| 331 | 68.96 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 352 | 68.98 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 12 |
| 362 | 69.01 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 16 |
| 366 | 69.02 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 14 |
| 389 | 69.05 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 12 |
| 413 | 69.08 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 9 |
| 436 | 69.11 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 491 | 69.23 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 510 | 69.27 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 536 | 69.32 | temperature | 25 | 1440 | > th | dose dependent | sin | 22 | NA |
| 553 | 69.34 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 22 |
| 598 | 69.43 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 669 | 69.57 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 19 |
| 791 | 69.77 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 19 |
| 792 | 69.77 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 21 |
| 798 | 69.78 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 15 |
| 817 | 69.82 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 830 | 69.83 | radiation | 1 | 1440 | < th | dose dependent | sin | 14 | NA |
| 837 | 69.84 | radiation | 20 | 1440 | < th | dose dependent | rect. | 18 | 6 |
| 928 | 69.99 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 19 |
| 931 | 70.00 | radiation | 20 | 1440 | < th | dose dependent | rect. | 18 | 3 |