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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0676500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.34 (0.033) R2 : 0.655
β1 : -1.44 (0.152) R2dD : 0.129 R2D : 0.22
β2 : 1.69 (0.0776) R2dC : 0.378 R2C : 0.281
β3 : -2.11 (0.16) R2dE : 0.202 R2E : -0.17
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -5.29 (0.604) R2dD*E : 0.141 R2D*E : 0.133
γ1 : -0.0862 (0.071) R2dN8 : 0.00177 R2N8 : -0.0107
σ : 0.573
deviance : 151.35
__
_____
C
peak time of C : 14.7
E
wheather : radiation
threshold : 1.025
memory length : 4088
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
151.34 0.578 5.34 -1.43 1.69 -2.12 0.049 -5.32 -0.0866 14.7 1.025 4089 -- --
168.13 0.604 5.45 -2.09 1.6 -1.38 -0.557 -- -0.251 14.7 2.812 4002 -- --
151.35 0.573 5.34 -1.44 1.69 -2.11 -- -5.29 -0.0862 14.7 1.025 4088 -- --
169.44 0.606 5.44 -2.14 1.58 -1.57 -- -- -0.264 14.5 2.748 3994 -- --
186.52 0.636 5.39 -1.75 -- -2.96 -- -4.23 -0.269 -- 1.695 4890 -- --
192.46 0.65 5.4 -1.91 1.61 -- -0.403 -- -0.0131 16.1 -- -- -- --
192.9 0.65 5.41 -1.91 1.61 -- -- -- -0.0153 16.1 -- -- -- --
199.47 0.658 5.48 -2.37 -- -2.55 -- -- -0.432 -- 2.879 4890 -- --
274.19 0.771 5.39 -- 1.45 -1.24 -- -- -0.0113 14.6 10 2461 -- --
333.71 0.854 5.4 -1.98 -- -- -- -- -0.0582 -- -- -- -- --
289.45 0.796 5.36 -- 1.65 -- -- -- 0.198 16.1 -- -- -- --
308.12 0.818 5.43 -- -- -2.39 -- -- -0.19 -- 6.12 3432 -- --
437.05 0.976 5.35 -- -- -- -- -- 0.161 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 149.85 radiation 1 43200 > th dose independent rect. 18 11
2 149.93 radiation 1 43200 > th dose independent rect. 18 1
12 149.93 radiation 1 43200 < th dose independent rect. 18 11
13 149.94 radiation 1 43200 < th dose independent rect. 18 2
14 149.95 radiation 1 43200 < th dose independent rect. 18 4
23 151.80 radiation 10 43200 < th dose dependent rect. 18 2
26 151.85 radiation 10 43200 < th dose dependent rect. 18 5
36 152.01 radiation 1 43200 < th dose dependent rect. 18 11
62 152.43 humidity 90 43200 > th dose dependent rect. 5 1
70 152.62 radiation 1 43200 < th dose dependent rect. 1 4
71 152.63 radiation 10 4320 < th dose dependent rect. 18 2
72 152.65 radiation 1 43200 < th dose dependent rect. 4 1
81 152.89 radiation 1 43200 < th dose dependent rect. 22 7
93 153.26 radiation 10 4320 < th dose dependent rect. 18 5
96 153.40 radiation 1 4320 < th dose dependent rect. 18 12
97 153.48 temperature 20 14400 < th dose dependent rect. 5 1
129 154.11 humidity 60 43200 < th dose dependent rect. 20 16
132 154.13 atmosphere 1005 43200 > th dose independent rect. 16 1
138 154.17 humidity 90 43200 > th dose independent rect. 5 1
149 154.22 humidity 60 43200 < th dose independent rect. 22 11
150 154.22 radiation 1 4320 < th dose dependent sin 13 NA
155 154.27 atmosphere 1005 43200 > th dose dependent rect. 4 1
167 154.31 humidity 60 43200 < th dose dependent rect. 24 12
192 154.44 atmosphere 1005 43200 < th dose independent rect. 16 1
207 154.47 humidity 60 43200 < th dose independent rect. 24 9
262 154.61 atmosphere 1010 43200 < th dose independent rect. 6 1
302 154.74 atmosphere 1010 43200 < th dose independent rect. 5 3
308 154.75 humidity 60 43200 < th dose dependent sin 8 NA
309 154.75 atmosphere 1005 43200 > th dose dependent rect. 18 2
322 154.77 humidity 60 43200 < th dose dependent rect. 11 1
351 154.81 atmosphere 1005 43200 > th dose dependent rect. 18 13
386 154.85 atmosphere 1005 43200 > th dose dependent rect. 23 11
395 154.86 atmosphere 1005 43200 > th dose dependent sin 8 NA
505 154.93 atmosphere 1005 43200 > th dose dependent rect. 9 2
530 154.94 atmosphere 1005 43200 > th dose dependent rect. 3 18
533 154.94 atmosphere 1005 43200 > th dose dependent rect. 1 20
536 154.94 atmosphere 1005 43200 > th dose dependent rect. 9 22
539 154.95 atmosphere 1010 43200 > th dose independent rect. 6 1
542 154.95 atmosphere 1005 43200 > th dose dependent rect. 1 1
543 154.95 atmosphere 1005 43200 > th dose dependent rect. 23 1
564 154.95 atmosphere 1005 43200 > th dose dependent rect. 23 22
568 154.96 atmosphere 1005 43200 > th dose dependent no NA NA
768 155.07 atmosphere 1005 43200 > th dose dependent rect. 9 15
780 155.08 atmosphere 1010 43200 < th dose independent rect. 22 1
808 155.09 atmosphere 1005 43200 > th dose dependent rect. 9 13
820 155.10 atmosphere 1005 43200 > th dose dependent rect. 23 3
909 155.19 humidity 50 43200 < th dose independent sin 9 NA
910 155.19 humidity 60 43200 > th dose independent rect. 22 11
911 155.19 radiation 1 4320 < th dose dependent rect. 4 2
990 155.30 humidity 50 43200 > th dose independent sin 9 NA