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Os08g0104300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to RING finger family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.3 (0.017) R2 : 0.753
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.58 (0.0424) R2dC : 0.757 R2C : 0.752
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0468 (0.0358) R2dN8 : 0.0012 R2N8 : -0.00355
σ : 0.321
deviance : 47
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_____
C
peak time of C : 8.99
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
31.11 0.262 12.3 0.437 1.09 -0.816 0.0949 0.457 0.0757 6.77 11.79 10 -- --
32.16 0.264 12.3 0.43 1.1 -0.776 -0.165 -- 0.0737 6.92 11.56 9 -- --
31.13 0.26 12.3 0.438 1.09 -0.817 -- 0.438 0.0761 6.76 11.82 9 -- --
32.22 0.264 12.3 0.428 1.1 -0.796 -- -- 0.0735 6.83 11.47 9 -- --
86.08 0.432 12.3 0.51 -- -0.984 -- 0.571 0.0783 -- 7.891 6 -- --
41.68 0.303 12.3 0.441 1.58 -- -0.382 -- 0.0947 9.01 -- -- -- --
42.18 0.304 12.3 0.427 1.58 -- -- -- 0.0944 9.01 -- -- -- --
87.27 0.435 12.3 0.453 -- -0.995 -- -- 0.0784 -- 7.661 6 -- --
36.98 0.283 12.3 -- 1.11 -0.8 -- -- 0.0291 6.81 12.53 9 -- --
185.35 0.636 12.3 0.425 -- -- -- -- 0.104 -- -- -- -- --
47 0.321 12.3 -- 1.58 -- -- -- 0.0468 8.99 -- -- -- --
90.88 0.444 12.4 -- -- -0.998 -- -- 0.0312 -- 7.191 2 -- --
190.12 0.644 12.3 -- -- -- -- -- 0.057 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 29.75 radiation 1.0 30 > th dose independent sin 0 NA
2 29.76 radiation 10.0 10 < th dose dependent rect. 1 19
3 29.82 radiation 10.0 10 < th dose dependent rect. 24 21
7 29.96 radiation 10.0 90 < th dose dependent rect. 1 18
11 30.06 radiation 1.0 10 < th dose dependent sin 0 NA
12 30.08 radiation 1.0 10 < th dose independent sin 0 NA
14 30.14 radiation 1.0 90 < th dose independent rect. 1 18
36 30.79 radiation 10.0 14400 < th dose dependent rect. 21 6
42 30.86 radiation 1.0 10 < th dose independent rect. 2 18
51 31.05 radiation 40.0 270 < th dose independent rect. 14 14
82 31.40 radiation 10.0 10 < th dose dependent rect. 8 23
89 31.48 radiation 10.0 10 < th dose dependent rect. 15 23
95 31.53 radiation 10.0 10 < th dose dependent rect. 13 23
96 31.54 radiation 10.0 10 < th dose dependent rect. 11 23
97 31.55 radiation 10.0 10 < th dose dependent no NA NA
100 31.57 radiation 10.0 10 < th dose dependent rect. 13 21
115 31.71 precipitation 0.1 270 < th dose independent rect. 4 10
116 31.71 precipitation 0.1 270 < th dose dependent rect. 4 10
119 31.73 radiation 10.0 10 < th dose dependent rect. 24 23
123 31.76 atmosphere 995.0 270 > th dose independent rect. 23 20
124 31.76 radiation 20.0 10 < th dose dependent rect. 13 17
131 31.84 temperature 10.0 270 > th dose independent rect. 4 10
132 31.84 atmosphere 995.0 270 > th dose independent rect. 4 10
133 31.84 atmosphere 1015.0 270 < th dose independent rect. 4 10
134 31.84 temperature 10.0 270 > th dose independent rect. 14 14
140 31.87 atmosphere 995.0 270 > th dose independent rect. 14 14
146 31.92 temperature 15.0 270 > th dose independent rect. 19 4
153 31.95 temperature 30.0 270 < th dose independent rect. 15 2
157 31.97 atmosphere 1015.0 270 < th dose independent rect. 23 20
169 32.05 temperature 30.0 270 < th dose independent rect. 24 18
177 32.09 wind 9.0 270 < th dose independent rect. 4 10
180 32.10 temperature 30.0 270 < th dose independent rect. 14 4
190 32.15 wind 9.0 270 < th dose independent rect. 19 4
195 32.16 temperature 30.0 270 < th dose independent rect. 19 4
196 32.16 humidity 50.0 270 > th dose independent rect. 19 4
198 32.16 atmosphere 995.0 270 > th dose independent rect. 19 4
199 32.16 radiation 1.0 270 < th dose independent rect. 19 4
204 32.16 temperature 10.0 270 > th dose independent rect. 23 20
205 32.16 radiation 1.0 270 < th dose dependent rect. 19 4
213 32.19 temperature 15.0 270 > th dose independent rect. 20 2
220 32.22 humidity 50.0 270 > th dose independent rect. 24 19
234 32.28 wind 9.0 270 < th dose independent rect. 14 14
236 32.28 wind 9.0 270 < th dose independent rect. 23 20
261 32.37 wind 1.0 270 > th dose independent rect. 19 4
272 32.40 precipitation 0.1 270 < th dose independent rect. 19 4
289 32.40 precipitation 0.1 270 < th dose dependent rect. 19 4
299 32.41 temperature 30.0 10 < th dose dependent rect. 14 6
303 32.44 wind 9.0 270 < th dose independent rect. 20 2
305 32.45 temperature 30.0 270 < th dose independent rect. 20 2
306 32.45 humidity 50.0 270 > th dose independent rect. 20 2
309 32.45 atmosphere 995.0 270 > th dose independent rect. 20 2
310 32.45 radiation 1.0 270 < th dose independent rect. 20 2
323 32.45 temperature 10.0 270 > th dose independent rect. 22 22
324 32.45 radiation 1.0 270 < th dose dependent rect. 20 2
345 32.50 atmosphere 995.0 270 > th dose independent rect. 22 22
357 32.54 humidity 50.0 270 > th dose independent rect. 14 14
370 32.58 wind 1.0 270 > th dose independent rect. 20 2
393 32.59 radiation 40.0 90 < th dose dependent rect. 15 14
419 32.65 radiation 10.0 90 < th dose dependent rect. 13 6
424 32.67 precipitation 0.1 270 < th dose independent rect. 20 2
425 32.67 precipitation 0.1 270 < th dose dependent rect. 20 2
433 32.69 humidity 50.0 90 > th dose dependent rect. 20 5
437 32.69 radiation 10.0 10 < th dose dependent rect. 22 23
440 32.70 wind 9.0 270 < th dose independent rect. 22 22
443 32.71 radiation 10.0 10 < th dose dependent rect. 9 11
498 32.82 radiation 1.0 90 < th dose independent rect. 11 8
528 32.88 atmosphere 995.0 10 > th dose independent rect. 2 18
535 32.90 temperature 30.0 90 < th dose dependent rect. 15 4
570 32.94 atmosphere 1015.0 270 < th dose independent rect. 14 14
571 32.94 wind 9.0 270 < th dose dependent rect. 19 4
572 32.94 radiation 20.0 10 < th dose dependent rect. 12 8
587 32.97 radiation 20.0 270 < th dose independent rect. 15 2
605 32.98 precipitation 0.1 270 < th dose independent rect. 23 20
613 32.98 precipitation 0.1 270 < th dose dependent rect. 23 20
632 33.03 humidity 50.0 270 > th dose independent rect. 4 10
633 33.03 precipitation 0.1 270 < th dose independent rect. 14 14
634 33.03 precipitation 0.1 270 < th dose dependent rect. 14 14
641 33.05 temperature 15.0 10 > th dose independent rect. 20 6
648 33.06 radiation 10.0 90 < th dose dependent rect. 9 10
652 33.07 radiation 10.0 90 < th dose dependent rect. 15 4
667 33.10 wind 9.0 270 < th dose dependent rect. 20 2
683 33.13 radiation 1.0 90 > th dose independent rect. 4 12
711 33.15 humidity 50.0 10 > th dose dependent rect. 14 6
728 33.19 humidity 50.0 90 > th dose dependent rect. 15 4
737 33.20 temperature 30.0 10 < th dose independent rect. 20 6
739 33.20 humidity 50.0 10 > th dose independent rect. 20 6
745 33.20 atmosphere 995.0 10 > th dose independent rect. 20 6
747 33.20 radiation 1.0 10 < th dose independent rect. 20 6
757 33.20 temperature 10.0 10 > th dose independent rect. 2 18
760 33.20 atmosphere 1015.0 10 < th dose independent rect. 2 18
764 33.20 radiation 1.0 10 < th dose dependent rect. 20 6
783 33.21 humidity 50.0 10 > th dose dependent rect. 20 6
793 33.22 wind 9.0 10 < th dose independent rect. 20 6
796 33.22 radiation 40.0 270 < th dose dependent rect. 15 2
940 33.37 wind 9.0 10 < th dose independent rect. 2 18
942 33.37 humidity 50.0 270 > th dose dependent rect. 20 2
951 33.38 humidity 60.0 270 > th dose independent rect. 15 2
952 33.38 radiation 1.0 10 > th dose independent rect. 6 10
967 33.39 humidity 50.0 10 > th dose dependent rect. 1 19