BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0160600 Os03g0160600|J065016L23
(58 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0160600 Conserved hypothetical protein 121 1e-28
Os10g0422500 Endonuclease/exonuclease/phosphatase domain co... 79 9e-16
Os03g0663700 Similar to Type I inositol-1,4,5-trisphosphate... 76 7e-15
Os07g0175900 Similar to Inositol-1, 4, 5-trisphosphate 5-Ph... 70 4e-13
Os03g0793600 Endonuclease/exonuclease/phosphatase domain co... 69 1e-12
>Os03g0160600 Conserved hypothetical protein
Length = 58
Score = 121 bits (303), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 58/58 (100%), Positives = 58/58 (100%)
Query: 1 MCYNFGASSSAFYFRRIIWLGDLNYRIALSYRSVKALVEMRNWKALLEKDQVRVCKPS 58
MCYNFGASSSAFYFRRIIWLGDLNYRIALSYRSVKALVEMRNWKALLEKDQVRVCKPS
Sbjct: 1 MCYNFGASSSAFYFRRIIWLGDLNYRIALSYRSVKALVEMRNWKALLEKDQVRVCKPS 58
>Os10g0422500 Endonuclease/exonuclease/phosphatase domain containing protein
Length = 590
Score = 78.6 bits (192), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 37/38 (97%), Positives = 38/38 (100%)
Query: 16 RIIWLGDLNYRIALSYRSVKALVEMRNWKALLEKDQVR 53
RIIWLGDLNYRIALSYRSVKALVEMRNWKALLEKDQ+R
Sbjct: 424 RIIWLGDLNYRIALSYRSVKALVEMRNWKALLEKDQLR 461
>Os03g0663700 Similar to Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2
(EC 3.1.3.56) (Cotyledon vascular pattern 2 protein)
Length = 274
Score = 75.9 bits (185), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 35/39 (89%), Positives = 37/39 (94%)
Query: 16 RIIWLGDLNYRIALSYRSVKALVEMRNWKALLEKDQVRV 54
RIIWLGDLNYRIALSYRSVKALVEM NWK LLEKDQ+R+
Sbjct: 114 RIIWLGDLNYRIALSYRSVKALVEMHNWKQLLEKDQLRI 152
>Os07g0175900 Similar to Inositol-1, 4, 5-trisphosphate 5-Phosphatase-like
protein
Length = 570
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/39 (82%), Positives = 35/39 (89%)
Query: 16 RIIWLGDLNYRIALSYRSVKALVEMRNWKALLEKDQVRV 54
RIIWLGDLNYRIALSY S +ALVEM NWK LLEKDQ+R+
Sbjct: 413 RIIWLGDLNYRIALSYCSARALVEMHNWKQLLEKDQLRI 451
>Os03g0793600 Endonuclease/exonuclease/phosphatase domain containing protein
Length = 598
Score = 68.6 bits (166), Expect = 1e-12, Method: Composition-based stats.
Identities = 31/36 (86%), Positives = 32/36 (88%)
Query: 16 RIIWLGDLNYRIALSYRSVKALVEMRNWKALLEKDQ 51
RIIWLGDLNYRI+LSY S KALVEM NWK LLEKDQ
Sbjct: 408 RIIWLGDLNYRISLSYCSAKALVEMHNWKQLLEKDQ 443
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.328 0.137 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,759,769
Number of extensions: 40490
Number of successful extensions: 136
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 5
Length of query: 58
Length of database: 17,035,801
Length adjustment: 31
Effective length of query: 27
Effective length of database: 15,417,167
Effective search space: 416263509
Effective search space used: 416263509
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 149 (62.0 bits)