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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0793600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Endonuclease/exonuclease/phosphatase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.15 (0.047) R2 : 0.423
β1 : 0.014 (0.174) R2dD : 1.05e-05 R2D : -0.0176
β2 : 1.82 (0.128) R2dC : 0.314 R2C : 0.314
β3 : 0.705 (0.297) R2dE : 0.0111 R2E : 0.00148
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -5.25 (1.03) R2dD*E : 0.0508 R2D*E : -0.0474
γ1 : 0.713 (0.0989) R2dN8 : 0.094 R2N8 : 0.0731
σ : 0.85
deviance : 332.7
__
_____
C
peak time of C : 7.25
E
wheather : wind
threshold : 0.1006
memory length : 364
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
330.46 0.854 4.15 0.0285 1.87 0.581 0.986 -5.64 0.717 7.21 0.3 365 -- --
350.17 0.878 4.09 0.147 1.87 -0.37 0.185 -- 0.702 7.11 0.3 365 -- --
332.7 0.85 4.15 0.014 1.82 0.705 -- -5.25 0.713 7.25 0.1006 364 -- --
350 0.877 4.09 0.155 1.87 -0.413 -- -- 0.701 7.11 0.1006 364 -- --
443.65 0.981 4.26 -0.618 -- 1.84 -- -4.98 0.689 -- 3.201 420 -- --
351.3 0.879 4.09 0.126 1.86 -- 0.19 -- 0.71 7.16 -- -- -- --
351.39 0.878 4.09 0.13 1.86 -- -- -- 0.71 7.16 -- -- -- --
441.89 0.979 4.1 -0.326 -- 1.77 -- -- 0.87 -- 3.801 416 -- --
350.54 0.872 4.1 -- 1.87 -0.37 -- -- 0.668 7.19 0.8 1153 -- --
533.53 1.08 4.13 0.165 -- -- -- -- 0.743 -- -- -- -- --
351.84 0.877 4.09 -- 1.86 -- -- -- 0.695 7.16 -- -- -- --
444.52 0.982 4.1 -- -- 1.7 -- -- 0.898 -- 3.8 415 -- --
534.24 1.08 4.13 -- -- -- -- -- 0.724 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 325.64 wind 9.0 720 > th dose independent rect. 22 4
9 325.64 wind 9.0 720 > th dose dependent rect. 22 4
17 325.96 wind 9.0 720 > th dose independent rect. 22 1
21 325.96 wind 9.0 720 > th dose dependent rect. 22 1
49 326.97 wind 3.0 90 < th dose dependent rect. 3 4
50 327.30 wind 5.0 90 > th dose dependent rect. 23 1
51 327.40 wind 9.0 90 < th dose dependent rect. 7 20
52 327.70 wind 3.0 30 < th dose dependent rect. 20 7
55 327.79 wind 9.0 90 > th dose independent rect. 22 12
56 327.81 wind 9.0 270 > th dose independent rect. 13 2
57 327.81 wind 9.0 90 < th dose dependent rect. 15 12
58 327.82 wind 9.0 270 > th dose dependent rect. 13 2
59 327.83 wind 9.0 90 > th dose dependent rect. 22 12
115 328.58 wind 7.0 270 < th dose dependent rect. 3 1
120 328.77 humidity 80.0 10 > th dose dependent rect. 21 6
129 328.91 wind 1.0 270 < th dose independent rect. 4 1
135 329.26 wind 5.0 270 < th dose independent rect. 3 1
136 329.28 wind 3.0 30 < th dose dependent rect. 23 4
154 329.72 precipitation 0.1 10 < th dose independent rect. 3 23
155 329.72 precipitation 0.1 10 < th dose dependent rect. 3 23
161 329.90 atmosphere 1000.0 30 > th dose independent rect. 3 23
179 330.40 wind 3.0 90 < th dose independent rect. 3 4
185 330.59 temperature 25.0 270 < th dose independent rect. 23 6
186 330.62 temperature 20.0 10 > th dose independent rect. 2 1
191 330.73 temperature 10.0 270 > th dose dependent rect. 3 1
196 330.83 temperature 20.0 270 > th dose independent rect. 3 1
206 330.94 wind 3.0 90 < th dose independent rect. 7 20
207 330.95 precipitation 0.1 270 < th dose independent rect. 3 1
208 330.95 precipitation 0.1 270 < th dose dependent rect. 3 1
211 330.96 atmosphere 1015.0 90 < th dose dependent rect. 3 4
215 331.00 wind 5.0 10 < th dose dependent rect. 3 5
219 331.04 radiation 1.0 43200 < th dose dependent rect. 3 1
221 331.06 atmosphere 1005.0 90 > th dose dependent rect. 2 1
225 331.08 atmosphere 1010.0 30 < th dose dependent rect. 2 1
229 331.14 temperature 25.0 270 < th dose independent rect. 3 1
240 331.27 temperature 20.0 10 > th dose dependent rect. 2 1
242 331.29 precipitation 0.1 10 < th dose independent rect. 7 20
243 331.29 precipitation 0.1 10 < th dose dependent rect. 7 20
244 331.30 humidity 80.0 30 > th dose dependent rect. 7 20
249 331.38 humidity 80.0 10 > th dose independent rect. 2 1
256 331.43 temperature 10.0 270 > th dose independent rect. 3 1
259 331.43 humidity 50.0 270 > th dose independent rect. 3 1
262 331.43 atmosphere 995.0 270 > th dose independent rect. 3 1
263 331.43 atmosphere 1010.0 270 < th dose independent rect. 3 1
265 331.43 radiation 1.0 270 < th dose independent rect. 3 1
270 331.43 temperature 10.0 270 > th dose independent rect. 4 23
271 331.43 radiation 1.0 270 < th dose dependent rect. 3 1
279 331.47 humidity 90.0 10 > th dose independent rect. 21 6
285 331.54 wind 9.0 90 < th dose independent rect. 7 20
286 331.54 temperature 10.0 30 > th dose dependent rect. 3 4
288 331.57 wind 3.0 30 < th dose independent rect. 2 1
294 331.64 atmosphere 1000.0 30 > th dose independent rect. 2 1
298 331.66 wind 1.0 30 > th dose independent rect. 2 1
299 331.66 wind 7.0 90 < th dose independent rect. 15 12
300 331.67 temperature 25.0 30 < th dose independent rect. 2 1
308 331.69 atmosphere 1010.0 90 < th dose independent rect. 3 4
316 331.71 wind 9.0 30 < th dose independent rect. 2 1
317 331.71 temperature 10.0 30 > th dose independent rect. 2 1
320 331.71 humidity 50.0 30 > th dose independent rect. 2 1
324 331.71 atmosphere 1010.0 30 < th dose independent rect. 2 1
326 331.71 radiation 1.0 30 < th dose independent rect. 2 1
331 331.71 precipitation 0.1 30 < th dose independent rect. 2 1
332 331.71 temperature 10.0 30 > th dose independent rect. 3 23
333 331.71 radiation 1.0 30 < th dose dependent rect. 2 1
338 331.71 precipitation 0.1 30 < th dose dependent rect. 2 1
340 331.72 wind 3.0 30 < th dose dependent rect. 2 1
341 331.72 atmosphere 1015.0 270 < th dose dependent rect. 3 1
348 331.75 wind 9.0 30 < th dose dependent rect. 2 1
349 331.75 humidity 50.0 30 > th dose dependent rect. 2 1
362 331.82 radiation 1.0 4320 < th dose dependent rect. 3 1
366 331.84 radiation 40.0 90 < th dose independent rect. 7 20
371 331.88 precipitation 0.1 90 < th dose independent rect. 3 4
372 331.88 atmosphere 995.0 30 > th dose dependent rect. 2 1
374 331.88 precipitation 0.1 90 < th dose dependent rect. 3 4
380 331.92 wind 9.0 1440 < th dose independent rect. 3 1
381 331.92 temperature 10.0 1440 > th dose independent rect. 3 1
384 331.92 temperature 30.0 1440 < th dose independent rect. 3 1
388 331.92 humidity 50.0 1440 > th dose independent rect. 3 1
397 331.92 atmosphere 995.0 1440 > th dose independent rect. 3 1
398 331.92 radiation 1.0 1440 < th dose independent rect. 3 1
419 331.92 temperature 10.0 1440 > th dose independent rect. 4 23
429 331.94 temperature 10.0 90 > th dose independent rect. 3 4
431 331.94 temperature 30.0 90 < th dose independent rect. 3 4
432 331.94 humidity 50.0 90 > th dose independent rect. 3 4
434 331.94 atmosphere 995.0 90 > th dose independent rect. 3 4
436 331.94 radiation 40.0 90 < th dose independent rect. 3 4
437 331.94 temperature 10.0 90 > th dose independent rect. 7 20
443 331.99 wind 9.0 10 > th dose independent rect. 18 1
446 331.99 wind 9.0 10 > th dose dependent rect. 18 1
459 332.06 wind 9.0 10 < th dose independent rect. 7 20
462 332.08 temperature 30.0 30 < th dose dependent rect. 2 1
480 332.20 wind 3.0 30 < th dose dependent rect. 13 14
482 332.22 wind 1.0 30 < th dose independent rect. 21 6
509 332.28 humidity 50.0 270 > th dose dependent rect. 3 1
510 332.28 wind 9.0 90 > th dose dependent rect. 17 17
514 332.30 radiation 10.0 14400 < th dose dependent rect. 22 6
533 332.37 wind 9.0 270 < th dose independent rect. 4 23
557 332.38 wind 9.0 90 > th dose dependent rect. 16 3
586 332.45 wind 9.0 90 > th dose dependent rect. 17 9
606 332.48 radiation 40.0 90 < th dose dependent rect. 3 4
634 332.62 radiation 10.0 14400 < th dose dependent rect. 19 9
637 332.63 humidity 50.0 90 > th dose dependent rect. 3 4
724 333.03 wind 9.0 90 > th dose independent rect. 13 6
740 333.11 wind 1.0 10 < th dose independent rect. 7 20
741 333.11 wind 9.0 90 > th dose independent rect. 13 21
746 333.12 wind 9.0 90 > th dose independent rect. 16 3
750 333.13 wind 9.0 90 > th dose independent rect. 16 18
762 333.16 wind 9.0 90 > th dose independent rect. 12 14
780 333.18 wind 9.0 90 > th dose independent rect. 16 10
801 333.22 wind 9.0 1440 < th dose independent rect. 4 4
802 333.22 temperature 10.0 1440 > th dose independent rect. 4 4
805 333.22 temperature 30.0 1440 < th dose independent rect. 4 4
809 333.22 humidity 50.0 1440 > th dose independent rect. 4 4
814 333.22 atmosphere 995.0 1440 > th dose independent rect. 4 4
815 333.22 atmosphere 1015.0 1440 < th dose independent rect. 4 4
816 333.22 temperature 10.0 1440 > th dose independent rect. 8 20
823 333.26 radiation 40.0 90 < th dose dependent rect. 7 20
834 333.32 wind 1.0 90 > th dose dependent rect. 12 13
841 333.36 humidity 90.0 10 < th dose independent rect. 12 20
875 333.44 wind 1.0 10 > th dose independent rect. 12 19
876 333.44 humidity 80.0 30 > th dose dependent rect. 10 17
914 333.66 atmosphere 995.0 90 > th dose dependent rect. 12 11
950 333.79 temperature 10.0 30 > th dose dependent rect. 7 20
955 333.83 humidity 80.0 30 > th dose dependent rect. 18 9
963 333.86 wind 9.0 90 > th dose independent sin 13 NA
966 333.87 wind 9.0 90 > th dose dependent rect. 13 6
974 333.89 wind 1.0 10 < th dose independent rect. 14 13
975 333.89 atmosphere 1015.0 90 < th dose independent rect. 7 20
982 333.91 wind 9.0 90 > th dose dependent rect. 13 21
1000 333.96 temperature 15.0 270 > th dose independent rect. 9 21