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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0160600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.85 (0.0195) R2 : 0.0265
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.145 (0.041) R2dN8 : 0.0343 R2N8 : 0.0265
σ : 0.367
deviance : 61.76
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
59.7 0.363 2.86 -0.0516 0.0168 -0.256 -0.208 0.952 0.135 3.53 1.02 16 -- --
60.31 0.364 2.85 -0.0107 0.0238 -0.17 -0.324 -- 0.145 3.69 1.02 16 -- --
59.77 0.36 2.87 -0.0638 0.0385 -0.251 -- 1.05 0.134 1.24 1 16 -- --
60.56 0.365 2.85 -0.00538 0.0394 -0.166 -- -- 0.147 23.8 1.02 16 -- --
59.84 0.36 2.86 -0.0517 -- -0.267 -- 1.04 0.135 -- 1.04 16 -- --
61.2 0.367 2.85 0.00719 0.0758 -- -0.265 -- 0.143 3.15 -- -- -- --
61.41 0.367 2.85 0.0127 0.075 -- -- -- 0.145 2.26 -- -- -- --
60.65 0.364 2.85 -0.00526 -- -0.174 -- -- 0.148 -- 1.048 16 -- --
60.56 0.364 2.85 -- 0.0394 -0.165 -- -- 0.148 23.8 1.02 16 -- --
61.75 0.367 2.85 0.0158 -- -- -- -- 0.146 -- -- -- -- --
61.42 0.367 2.85 -- 0.0753 -- -- -- 0.143 2.26 -- -- -- --
60.65 0.364 2.85 -- -- -0.174 -- -- 0.148 -- 1.041 16 -- --
61.76 0.367 2.85 -- -- -- -- -- 0.145 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 56.41 temperature 20.0 30 > th dose dependent rect. 2 1
2 56.41 atmosphere 1005.0 30 > th dose dependent rect. 2 1
3 56.43 atmosphere 1005.0 30 > th dose independent rect. 2 1
4 56.43 wind 3.0 30 < th dose dependent rect. 2 1
6 56.44 temperature 20.0 30 > th dose independent rect. 2 1
9 56.45 wind 3.0 30 < th dose independent rect. 2 1
16 56.47 humidity 80.0 30 > th dose independent rect. 2 1
18 56.48 temperature 10.0 30 > th dose independent rect. 2 1
20 56.48 temperature 30.0 30 < th dose independent rect. 2 1
21 56.48 humidity 50.0 30 > th dose independent rect. 2 1
24 56.48 atmosphere 995.0 30 > th dose independent rect. 2 1
26 56.48 atmosphere 1010.0 30 < th dose independent rect. 2 1
28 56.48 radiation 1.0 30 < th dose independent rect. 2 1
33 56.48 precipitation 0.1 30 < th dose independent rect. 2 1
34 56.48 temperature 10.0 30 > th dose independent rect. 3 23
35 56.48 humidity 50.0 30 > th dose dependent rect. 2 1
37 56.48 radiation 1.0 30 < th dose dependent rect. 2 1
42 56.48 precipitation 0.1 30 < th dose dependent rect. 2 1
48 56.52 wind 9.0 1440 < th dose independent rect. 3 1
49 56.52 temperature 10.0 1440 > th dose independent rect. 3 1
52 56.52 temperature 30.0 1440 < th dose independent rect. 3 1
56 56.52 humidity 50.0 1440 > th dose independent rect. 3 1
65 56.52 atmosphere 995.0 1440 > th dose independent rect. 3 1
66 56.52 radiation 1.0 1440 < th dose independent rect. 3 1
86 56.52 temperature 10.0 1440 > th dose independent rect. 4 23
89 56.52 radiation 1.0 1440 < th dose dependent rect. 3 1
108 56.56 atmosphere 1015.0 30 < th dose dependent rect. 2 1
111 56.62 temperature 30.0 30 < th dose dependent rect. 2 1
118 56.70 wind 1.0 30 > th dose independent rect. 2 1
124 56.75 atmosphere 995.0 30 > th dose independent rect. 3 23
168 57.04 precipitation 0.1 30 < th dose independent rect. 3 23
169 57.04 precipitation 0.1 30 < th dose dependent rect. 3 23
174 57.21 wind 9.0 30 < th dose independent rect. 3 23
184 57.78 humidity 50.0 30 > th dose independent rect. 3 23
212 58.74 temperature 30.0 30 < th dose independent rect. 3 23
247 58.98 atmosphere 995.0 720 > th dose independent rect. 15 8
252 59.04 temperature 10.0 720 > th dose independent rect. 15 8
253 59.04 temperature 10.0 720 > th dose independent rect. 23 16
254 59.04 atmosphere 995.0 720 > th dose independent rect. 23 16
259 59.06 atmosphere 995.0 720 > th dose independent rect. 11 16
261 59.11 temperature 10.0 720 > th dose independent rect. 3 8
262 59.11 atmosphere 995.0 720 > th dose independent rect. 3 8
263 59.11 temperature 10.0 720 > th dose independent rect. 11 16
265 59.12 wind 1.0 10 > th dose independent rect. 21 23
267 59.16 atmosphere 1015.0 30 < th dose independent rect. 3 23
268 59.17 precipitation 0.1 720 < th dose independent rect. 15 8
269 59.17 precipitation 0.1 720 < th dose dependent rect. 15 8
270 59.19 humidity 90.0 90 < th dose independent rect. 2 1
271 59.19 humidity 50.0 720 > th dose independent rect. 3 8
272 59.20 wind 9.0 720 < th dose independent rect. 3 8
283 59.35 wind 1.0 10 < th dose independent rect. 11 16
290 59.39 wind 1.0 10 < th dose independent rect. 22 5
306 59.41 precipitation 0.1 720 < th dose independent rect. 11 16
307 59.41 precipitation 0.1 720 < th dose dependent rect. 11 16
312 59.44 temperature 25.0 270 > th dose independent rect. 23 4
313 59.44 wind 1.0 720 > th dose independent rect. 15 8
324 59.54 wind 3.0 10 > th dose independent rect. 20 1
325 59.54 wind 1.0 10 < th dose independent rect. 6 21
331 59.56 atmosphere 1010.0 30 < th dose dependent rect. 20 1
333 59.57 wind 1.0 30 > th dose independent rect. 3 23
338 59.60 wind 1.0 10 > th dose independent sin 16 NA
345 59.62 precipitation 0.1 720 < th dose independent rect. 3 8
347 59.62 precipitation 0.1 720 < th dose dependent rect. 3 8
357 59.66 wind 1.0 10 > th dose independent rect. 23 12
359 59.67 temperature 20.0 10 > th dose independent rect. 20 1
360 59.67 precipitation 0.1 720 < th dose independent rect. 23 16
361 59.67 wind 1.0 10 > th dose dependent rect. 20 1
363 59.67 precipitation 0.1 720 < th dose dependent rect. 23 16
366 59.70 wind 5.0 10 < th dose independent rect. 20 1
371 59.71 temperature 10.0 10 > th dose dependent rect. 20 1
377 59.73 wind 1.0 10 > th dose independent rect. 8 23
379 59.73 humidity 50.0 10 > th dose dependent rect. 20 1
385 59.74 temperature 10.0 10 > th dose independent rect. 20 1
387 59.74 temperature 30.0 10 < th dose independent rect. 20 1
388 59.74 humidity 50.0 10 > th dose independent rect. 20 1
391 59.74 atmosphere 995.0 10 > th dose independent rect. 20 1
392 59.74 atmosphere 1010.0 10 < th dose independent rect. 20 1
394 59.74 radiation 1.0 10 < th dose independent rect. 20 1
399 59.74 precipitation 0.1 10 < th dose independent rect. 20 1
401 59.74 wind 1.0 720 > th dose independent rect. 15 6
402 59.74 temperature 10.0 10 > th dose independent rect. 21 23
404 59.74 radiation 1.0 10 < th dose dependent rect. 20 1
409 59.74 precipitation 0.1 10 < th dose dependent rect. 20 1
431 59.79 humidity 70.0 720 > th dose independent rect. 3 6
432 59.79 precipitation 0.1 720 < th dose independent rect. 15 6
434 59.79 wind 1.0 10 > th dose independent rect. 23 23
437 59.79 precipitation 0.1 720 < th dose dependent rect. 15 6
443 59.81 wind 9.0 10 < th dose dependent rect. 20 1
455 59.83 precipitation 0.1 10 < th dose independent rect. 2 10
458 59.83 wind 1.0 10 > th dose independent rect. 21 14
461 59.83 precipitation 0.1 10 < th dose dependent rect. 2 10
464 59.84 wind 1.0 10 > th dose independent rect. 23 21
465 59.84 wind 9.0 720 < th dose dependent rect. 2 1
471 59.85 humidity 50.0 720 > th dose independent rect. 23 16
506 59.87 temperature 25.0 270 > th dose independent rect. 17 10
507 59.87 precipitation 0.1 10 < th dose independent rect. 2 12
510 59.87 atmosphere 995.0 10 > th dose dependent rect. 20 1
518 59.87 precipitation 0.1 10 < th dose dependent rect. 2 12
523 59.88 wind 9.0 10 < th dose independent rect. 21 23
526 59.88 temperature 30.0 30 < th dose dependent rect. 20 1
531 59.89 temperature 10.0 720 > th dose independent rect. 15 6
534 59.89 precipitation 0.1 720 < th dose independent rect. 19 8
540 59.89 temperature 10.0 720 > th dose independent rect. 21 18
541 59.89 precipitation 0.1 720 < th dose independent rect. 9 18
544 59.89 precipitation 0.1 720 < th dose dependent rect. 19 8
545 59.89 precipitation 0.1 720 < th dose dependent rect. 9 18
547 59.90 wind 3.0 720 < th dose independent rect. 2 1
560 59.91 wind 9.0 720 < th dose independent rect. 3 6
561 59.91 wind 9.0 720 < th dose independent rect. 15 6
562 59.91 temperature 10.0 720 > th dose independent rect. 3 6
563 59.91 humidity 50.0 720 > th dose independent rect. 3 6
564 59.91 atmosphere 995.0 720 > th dose independent rect. 3 6
565 59.91 radiation 40.0 720 < th dose independent rect. 15 8
566 59.91 temperature 10.0 720 > th dose independent rect. 9 18
572 59.92 temperature 10.0 720 > th dose independent rect. 7 8
573 59.92 atmosphere 1015.0 720 < th dose independent rect. 7 8
576 59.92 temperature 10.0 720 > th dose independent rect. 15 16
577 59.92 atmosphere 995.0 720 > th dose independent rect. 15 16
583 59.93 atmosphere 995.0 720 > th dose independent rect. 7 8
585 59.93 humidity 90.0 30 < th dose dependent rect. 20 1
587 59.93 radiation 10.0 10 < th dose dependent rect. 3 23
588 59.94 wind 1.0 10 > th dose independent no NA NA
589 59.94 wind 9.0 720 < th dose independent rect. 19 8
590 59.94 wind 1.0 10 > th dose independent rect. 21 10
591 59.94 wind 9.0 30 < th dose independent rect. 2 10
592 59.94 temperature 10.0 1440 > th dose independent rect. 3 10
595 59.94 atmosphere 995.0 1440 > th dose independent rect. 3 10
596 59.94 wind 9.0 30 < th dose independent rect. 12 14
597 59.94 temperature 10.0 1440 > th dose independent rect. 13 14
600 59.94 atmosphere 995.0 720 > th dose independent rect. 21 18
604 59.94 radiation 10.0 720 < th dose dependent rect. 18 9
608 59.95 radiation 40.0 720 < th dose independent rect. 15 6
609 59.95 wind 1.0 10 > th dose independent rect. 23 8
610 59.95 temperature 10.0 720 > th dose independent rect. 19 8
611 59.95 temperature 30.0 720 < th dose independent rect. 19 8
612 59.95 humidity 50.0 720 > th dose independent rect. 19 8
613 59.95 atmosphere 995.0 720 > th dose independent rect. 19 8
614 59.95 radiation 1.0 720 < th dose independent rect. 19 8
619 59.95 temperature 10.0 30 > th dose independent rect. 2 10
622 59.95 atmosphere 995.0 30 > th dose independent rect. 2 10
623 59.95 atmosphere 1015.0 30 < th dose independent rect. 2 10
625 59.95 temperature 10.0 30 > th dose independent rect. 12 14
626 59.95 precipitation 0.1 10 < th dose independent rect. 12 14
627 59.95 temperature 10.0 720 > th dose independent rect. 3 16
628 59.95 atmosphere 995.0 720 > th dose independent rect. 3 16
637 59.95 precipitation 0.1 10 < th dose dependent rect. 12 14
638 59.96 wind 9.0 1440 < th dose independent rect. 21 1
642 59.96 atmosphere 1015.0 720 < th dose independent rect. 3 6
643 59.96 atmosphere 1015.0 720 < th dose independent rect. 15 6
647 59.96 precipitation 0.1 720 < th dose independent rect. 15 22
649 59.96 precipitation 0.1 720 < th dose dependent rect. 15 22
655 59.98 humidity 90.0 30 < th dose independent rect. 20 1
657 59.98 atmosphere 1015.0 720 < th dose independent rect. 3 8
658 59.98 precipitation 0.1 720 < th dose independent rect. 7 8
659 59.98 humidity 50.0 30 > th dose independent rect. 2 10
661 59.98 precipitation 0.1 10 < th dose independent rect. 14 12
662 59.98 precipitation 0.1 720 < th dose independent rect. 15 16
664 59.98 radiation 10.0 1440 < th dose dependent rect. 21 1
668 59.98 precipitation 0.1 720 < th dose dependent rect. 7 8
670 59.98 precipitation 0.1 10 < th dose dependent rect. 14 12
671 59.98 precipitation 0.1 720 < th dose dependent rect. 15 16
683 59.99 wind 9.0 720 < th dose independent rect. 21 18
685 59.99 wind 1.0 10 > th dose independent rect. 12 23
690 60.00 temperature 10.0 1440 > th dose independent rect. 21 1
693 60.00 temperature 30.0 1440 < th dose independent rect. 21 1
697 60.00 humidity 50.0 1440 > th dose independent rect. 21 1
704 60.00 atmosphere 995.0 1440 > th dose independent rect. 21 1
705 60.00 radiation 1.0 1440 < th dose independent rect. 21 1
743 60.00 wind 1.0 10 < th dose independent rect. 2 11
744 60.00 temperature 10.0 10 > th dose independent rect. 2 12
746 60.00 temperature 10.0 10 > th dose independent rect. 14 12
748 60.00 atmosphere 995.0 10 > th dose independent rect. 2 12
749 60.00 atmosphere 1015.0 10 < th dose independent rect. 2 12
750 60.00 radiation 40.0 10 < th dose independent rect. 14 12
755 60.00 temperature 10.0 1440 > th dose independent rect. 22 23
781 60.01 temperature 10.0 30 > th dose dependent rect. 3 23
786 60.02 temperature 25.0 30 > th dose independent rect. 24 11
787 60.02 wind 9.0 10 < th dose independent rect. 2 12
788 60.02 wind 9.0 10 < th dose independent rect. 14 12
805 60.03 wind 9.0 30 < th dose dependent rect. 3 23
810 60.04 atmosphere 995.0 30 > th dose independent rect. 12 14
811 60.04 wind 9.0 720 < th dose independent rect. 23 16
820 60.05 temperature 30.0 720 < th dose independent rect. 3 6
825 60.05 atmosphere 995.0 10 > th dose independent rect. 14 12
831 60.06 wind 9.0 720 < th dose independent rect. 13 2
836 60.06 humidity 50.0 30 > th dose independent rect. 2 12
846 60.07 temperature 10.0 720 > th dose independent rect. 14 1
847 60.07 atmosphere 1015.0 720 < th dose independent rect. 14 1
848 60.07 precipitation 0.1 720 < th dose independent rect. 14 1
856 60.07 humidity 50.0 10 > th dose independent rect. 14 12
858 60.07 temperature 10.0 720 > th dose independent rect. 15 22
862 60.07 precipitation 0.1 720 < th dose dependent rect. 14 1
902 60.09 wind 1.0 720 > th dose independent rect. 14 1
910 60.09 atmosphere 995.0 720 > th dose independent rect. 14 1
916 60.09 precipitation 0.1 720 < th dose independent rect. 2 1
935 60.09 temperature 10.0 1440 > th dose independent rect. 3 12
938 60.09 temperature 10.0 1440 > th dose independent rect. 15 12
943 60.09 precipitation 0.1 720 < th dose independent rect. 15 12
945 60.09 radiation 30.0 10 < th dose independent rect. 21 14
957 60.09 precipitation 0.1 720 < th dose dependent rect. 2 1
967 60.09 temperature 20.0 30 > th dose dependent rect. 20 7
969 60.09 precipitation 0.1 720 < th dose dependent rect. 15 12
973 60.10 radiation 40.0 720 < th dose independent rect. 3 6
974 60.10 precipitation 0.1 720 < th dose independent rect. 3 6
983 60.10 precipitation 0.1 720 < th dose dependent rect. 3 6
989 60.11 humidity 50.0 30 > th dose independent rect. 12 14
994 60.11 radiation 1.0 30 < th dose independent rect. 3 23