BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0156500 Os03g0156500|AK103466
(481 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0156500 Lupus La protein family protein 452 e-127
Os03g0859300 RNA-binding protein Lupus La domain containing... 127 2e-29
Os01g0266000 Lupus La protein family protein 102 8e-22
AK110402 78 1e-14
>Os03g0156500 Lupus La protein family protein
Length = 481
Score = 452 bits (1163), Expect = e-127, Method: Compositional matrix adjust.
Identities = 221/221 (100%), Positives = 221/221 (100%)
Query: 261 YGAPIGFPEIAPHVYYFTSPLEGVQALPFVPHPASPPAMLIPQFDPLRAELLKQIEYYFS 320
YGAPIGFPEIAPHVYYFTSPLEGVQALPFVPHPASPPAMLIPQFDPLRAELLKQIEYYFS
Sbjct: 261 YGAPIGFPEIAPHVYYFTSPLEGVQALPFVPHPASPPAMLIPQFDPLRAELLKQIEYYFS 320
Query: 321 DDNLCKDIFLRRHMDDQGWVPLPLIAGFNQVKKLTNNVQFILETVLQSTVVEVQGDKLRK 380
DDNLCKDIFLRRHMDDQGWVPLPLIAGFNQVKKLTNNVQFILETVLQSTVVEVQGDKLRK
Sbjct: 321 DDNLCKDIFLRRHMDDQGWVPLPLIAGFNQVKKLTNNVQFILETVLQSTVVEVQGDKLRK 380
Query: 381 RERWEIWLLPKQGYSAGNSSGSLSPVTSNIDSLASQFQSVGLEGAGYHASQGMPGEALLT 440
RERWEIWLLPKQGYSAGNSSGSLSPVTSNIDSLASQFQSVGLEGAGYHASQGMPGEALLT
Sbjct: 381 RERWEIWLLPKQGYSAGNSSGSLSPVTSNIDSLASQFQSVGLEGAGYHASQGMPGEALLT 440
Query: 441 RSATSVSLGYQAPPLGGLYSNGSGPLFGQKSARSLLRSDTF 481
RSATSVSLGYQAPPLGGLYSNGSGPLFGQKSARSLLRSDTF
Sbjct: 441 RSATSVSLGYQAPPLGGLYSNGSGPLFGQKSARSLLRSDTF 481
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 71/113 (62%), Positives = 71/113 (62%)
Query: 54 SPIMDADSWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGNSGAPDA 113
SPIMDADSW LGNSGAPDA
Sbjct: 54 SPIMDADSWPALPGLASPPPTTLTPTPMPPKASPKVAPLPPPAEAVIPPISLGNSGAPDA 113
Query: 114 NPDHEAPVRNPPARRALVMPVGDGLDKRAPGSEPSPVYTPNARSNGGGDHHQN 166
NPDHEAPVRNPPARRALVMPVGDGLDKRAPGSEPSPVYTPNARSNGGGDHHQN
Sbjct: 114 NPDHEAPVRNPPARRALVMPVGDGLDKRAPGSEPSPVYTPNARSNGGGDHHQN 166
>Os03g0859300 RNA-binding protein Lupus La domain containing protein
Length = 383
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 58/123 (47%), Positives = 89/123 (72%), Gaps = 7/123 (5%)
Query: 308 RAELLKQIEYYFSDDNLCKDIFLRRHMDDQGWVPLPLIAGFNQVKKLTNNVQFILETVLQ 367
RA LLKQIE+YFS DNLC D+FLRR+MDDQGWV + LIAGFN+V++ T+++Q+I +T+
Sbjct: 236 RANLLKQIEFYFSKDNLCTDVFLRRNMDDQGWVNIALIAGFNKVQESTDDLQYIKDTIQS 295
Query: 368 STVVEVQGDKLRKRERWEIWLLPKQGYSAGNSSGSLSPVTSNIDSLASQFQSVGLEGAGY 427
S+++E+Q DK+R++ W W++P++ N+ SP NI++L + SVGL+ +
Sbjct: 296 SSILEMQDDKIRRQNDWNKWVIPRE----SNTDVLPSP---NINNLTAHLGSVGLQESAA 348
Query: 428 HAS 430
+S
Sbjct: 349 SSS 351
>Os01g0266000 Lupus La protein family protein
Length = 924
Score = 102 bits (253), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 96/178 (53%), Gaps = 14/178 (7%)
Query: 280 PLEGVQALP-FVPHPASPPAMLIPQFDPLRAELLKQIEYYFSDDNLCKDIFLRRHMDDQG 338
P+E ++ P FV + P +L P+ LRA++L Q+EYYFSD NL D FL+ MD+ G
Sbjct: 303 PMEPMRGPPRFVQNQPPPHPVLSPE---LRAKILTQVEYYFSDSNLDHDNFLKSLMDEHG 359
Query: 339 WVPLPLIAGFNQVKKLTNNVQFILETVLQSTVVEVQGDKLRKRERWEIWL-------LPK 391
WVP+ +A FN++KK+T ++Q I+E + S+++EVQ +R+R W W+
Sbjct: 360 WVPISKVADFNRLKKMTTDIQLIVEALANSSLLEVQDGNMRRRSDWSKWVSLSGTSLPSP 419
Query: 392 QGYSAGNSSGSLSPVTSNIDSLASQFQSVGLEGAGYHASQGMPGEALLTRSATSVSLG 449
S N++G + + D +SV G G + P L+ S TS++ G
Sbjct: 420 SSTSMDNTTGECNKDAYSEDEKKPHPRSVDCVGMG---ASDEPSHDTLSSSVTSLNKG 474
>AK110402
Length = 152
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
Query: 307 LRAELLKQIEYYFSDDNLCKDIFLRRHMDDQGWVPLPLIAGFNQVKKLTNNVQFILETVL 366
++ +LL Q+E+YFS NL D FLR+ MD QGWV + IA F +V+ +T++ +L+ +
Sbjct: 31 VQGQLLAQVEFYFSTRNLQGDFFLRQKMDGQGWVGVDTIAEFRRVQAVTSDAGVLLDALR 90
Query: 367 QSTVVEVQ--GDKLRKRERWEIWLLPK 391
S V++V ++RKR W+ W+LP+
Sbjct: 91 ASAVLDVDAAARRVRKRFGWQAWVLPE 117
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.135 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,210,172
Number of extensions: 515926
Number of successful extensions: 1365
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1365
Number of HSP's successfully gapped: 5
Length of query: 481
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 376
Effective length of database: 11,553,331
Effective search space: 4344052456
Effective search space used: 4344052456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 158 (65.5 bits)