Os01g0266000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Lupus La protein family protein.
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Os01g0266000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Lupus La protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 171.8 | 0.616 | 6.87 | 1.49 | 1.22 | 1.32 | 0.643 | 1.86 | 0.0723 | 19.1 | 7.97 | 96 | -- | -- |
| 177.49 | 0.62 | 6.86 | 1.52 | 1.17 | 1.17 | 0.341 | -- | 0.0825 | 18.9 | 6.926 | 125 | -- | -- |
| 172.57 | 0.612 | 6.86 | 1.48 | 1.2 | 1.29 | -- | 1.71 | 0.074 | 19 | 8.019 | 106 | -- | -- |
| 177.77 | 0.621 | 6.86 | 1.52 | 1.18 | 1.19 | -- | -- | 0.0798 | 19 | 6.526 | 125 | -- | -- |
| 217.81 | 0.687 | 6.85 | 1.43 | -- | 1.41 | -- | 1.53 | 0.00397 | -- | -2.871e-05 | 505 | -- | -- |
| 196.84 | 0.658 | 6.84 | 1.53 | 1.34 | -- | 0.668 | -- | 0.137 | 17.2 | -- | -- | -- | -- |
| 197.96 | 0.659 | 6.84 | 1.53 | 1.34 | -- | -- | -- | 0.14 | 17.2 | -- | -- | -- | -- |
| 217.11 | 0.686 | 6.85 | 1.42 | -- | 1.47 | -- | -- | -0.0116 | -- | -5.271 | 548 | -- | -- |
| 238.49 | 0.719 | 6.89 | -- | 1.12 | 1.22 | -- | -- | -0.0725 | 19 | 8.184 | 139 | -- | -- |
| 292.38 | 0.799 | 6.82 | 1.48 | -- | -- | -- | -- | 0.107 | -- | -- | -- | -- | -- |
| 259.36 | 0.753 | 6.88 | -- | 1.32 | -- | -- | -- | -0.0296 | 17.2 | -- | -- | -- | -- |
| 270.43 | 0.766 | 6.89 | -- | -- | 1.51 | -- | -- | -0.175 | -- | -0.512 | 565 | -- | -- |
| 350.07 | 0.873 | 6.86 | -- | -- | -- | -- | -- | -0.0575 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 157.42 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 2 | 157.52 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 5 |
| 8 | 158.28 | temperature | 25 | 270 | > th | dose dependent | rect. | 4 | 7 |
| 56 | 161.52 | temperature | 25 | 90 | > th | dose dependent | sin | 5 | NA |
| 113 | 163.15 | temperature | 25 | 90 | > th | dose dependent | rect. | 20 | 18 |
| 219 | 166.11 | radiation | 1 | 270 | > th | dose dependent | sin | 7 | NA |
| 259 | 167.08 | radiation | 40 | 270 | < th | dose dependent | sin | 6 | NA |
| 264 | 167.13 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 4 |
| 268 | 167.18 | atmosphere | 1000 | 90 | > th | dose dependent | rect. | 4 | 4 |
| 288 | 167.72 | atmosphere | 1000 | 270 | > th | dose dependent | rect. | 2 | 5 |
| 303 | 168.09 | radiation | 1 | 270 | > th | dose dependent | rect. | 7 | 4 |
| 319 | 168.37 | atmosphere | 1000 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 331 | 168.52 | radiation | 1 | 270 | > th | dose dependent | rect. | 6 | 7 |
| 374 | 168.94 | radiation | 10 | 270 | > th | dose independent | sin | 6 | NA |
| 394 | 169.09 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 404 | 169.13 | radiation | 20 | 270 | > th | dose independent | sin | 8 | NA |
| 429 | 169.17 | radiation | 40 | 270 | < th | dose independent | rect. | 2 | 15 |
| 460 | 169.49 | radiation | 40 | 270 | > th | dose independent | rect. | 9 | 1 |
| 469 | 169.58 | radiation | 1 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 470 | 169.61 | radiation | 40 | 270 | < th | dose independent | rect. | 10 | 22 |
| 502 | 169.97 | radiation | 20 | 270 | > th | dose independent | rect. | 7 | 4 |
| 515 | 170.08 | radiation | 10 | 270 | > th | dose independent | rect. | 6 | 8 |
| 567 | 170.18 | radiation | 10 | 90 | > th | dose dependent | sin | 3 | NA |
| 587 | 170.32 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 3 | 4 |
| 603 | 170.42 | radiation | 20 | 270 | < th | dose dependent | rect. | 3 | 8 |
| 749 | 170.97 | radiation | 20 | 270 | < th | dose independent | sin | 8 | NA |
| 757 | 171.00 | radiation | 40 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 780 | 171.21 | radiation | 10 | 90 | > th | dose dependent | rect. | 16 | 23 |
| 782 | 171.23 | radiation | 40 | 270 | > th | dose independent | sin | 11 | NA |
| 784 | 171.23 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 9 |
| 785 | 171.23 | radiation | 40 | 10 | < th | dose dependent | rect. | 6 | 14 |
| 787 | 171.25 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 13 |
| 788 | 171.28 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 4 | 2 |
| 790 | 171.29 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 3 | 15 |
| 839 | 171.41 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 11 |
| 916 | 171.54 | radiation | 30 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 968 | 171.72 | radiation | 10 | 270 | < th | dose independent | rect. | 3 | 5 |
| 975 | 171.76 | radiation | 1 | 10 | > th | dose dependent | rect. | 8 | 7 |
| 978 | 171.79 | temperature | 25 | 10 | > th | dose independent | rect. | 9 | 6 |
| 984 | 171.80 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 13 |