Os03g0859300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-binding protein Lupus La domain containing protein.
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Os03g0859300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA-binding protein Lupus La domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.85 | 0.234 | 11.2 | 1.19 | 0.323 | -0.801 | 0.333 | 2.47 | 0.0809 | 16.2 | 26.3 | 1194 | -- | -- |
| 26.44 | 0.239 | 11.2 | 0.681 | 0.335 | -0.555 | 0.281 | -- | -0.0405 | 17 | 26.39 | 1124 | -- | -- |
| 25.1 | 0.233 | 11.2 | 1.15 | 0.33 | -0.806 | -- | 2.34 | 0.072 | 16.6 | 26.32 | 1173 | -- | -- |
| 26.24 | 0.239 | 11.2 | 0.618 | 0.336 | -0.577 | -- | -- | -0.0472 | 16.6 | 26.5 | 1122 | -- | -- |
| 30.54 | 0.257 | 11.2 | 1.16 | -- | -0.845 | -- | 2.14 | 0.127 | -- | 25.24 | 1204 | -- | -- |
| 37.36 | 0.287 | 11.2 | 0.447 | 0.387 | -- | 0.463 | -- | -0.0636 | 15.3 | -- | -- | -- | -- |
| 38.01 | 0.289 | 11.2 | 0.456 | 0.392 | -- | -- | -- | -0.0607 | 15.5 | -- | -- | -- | -- |
| 31.9 | 0.263 | 11.2 | 0.647 | -- | -0.592 | -- | -- | -0.0333 | -- | 26.2 | 1181 | -- | -- |
| 35.51 | 0.278 | 11.3 | -- | 0.34 | -0.436 | -- | -- | -0.142 | 16.3 | 27.9 | 1122 | -- | -- |
| 46.61 | 0.319 | 11.2 | 0.439 | -- | -- | -- | -- | -0.0711 | -- | -- | -- | -- | -- |
| 43.49 | 0.308 | 11.2 | -- | 0.383 | -- | -- | -- | -0.111 | 15.6 | -- | -- | -- | -- |
| 41.4 | 0.3 | 11.3 | -- | -- | -0.475 | -- | -- | -0.154 | -- | 27.7 | 1175 | -- | -- |
| 51.7 | 0.336 | 11.2 | -- | -- | -- | -- | -- | -0.12 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.21 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 39 | 25.56 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 18 |
| 66 | 25.66 | temperature | 25 | 1440 | > th | dose dependent | sin | 17 | NA |
| 180 | 26.19 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 15 |
| 255 | 26.25 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 407 | 26.92 | humidity | 90 | 720 | < th | dose dependent | rect. | 16 | 7 |
| 410 | 26.93 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 4 |
| 415 | 26.96 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 4 |
| 468 | 27.10 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 8 |
| 499 | 27.23 | temperature | 30 | 720 | > th | dose independent | rect. | 17 | 2 |
| 594 | 27.41 | humidity | 80 | 720 | < th | dose dependent | rect. | 16 | 16 |
| 612 | 27.46 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 20 |
| 622 | 27.51 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 12 |
| 639 | 27.55 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 5 |
| 640 | 27.55 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 7 |
| 641 | 27.55 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 9 |
| 648 | 27.56 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 15 |
| 657 | 27.58 | temperature | 30 | 720 | < th | dose independent | sin | 12 | NA |
| 663 | 27.59 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 5 |
| 730 | 27.70 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 20 |
| 733 | 27.70 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 7 |
| 739 | 27.73 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 17 |
| 767 | 27.75 | wind | 7 | 43200 | < th | dose independent | rect. | 2 | 15 |
| 768 | 27.75 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 17 |
| 788 | 27.77 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 11 |
| 795 | 27.78 | wind | 7 | 43200 | > th | dose independent | rect. | 2 | 15 |
| 806 | 27.79 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 10 |
| 826 | 27.80 | wind | 7 | 43200 | < th | dose independent | sin | 2 | NA |
| 827 | 27.80 | temperature | 30 | 720 | > th | dose independent | sin | 12 | NA |
| 849 | 27.81 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 20 |
| 856 | 27.82 | wind | 7 | 43200 | > th | dose independent | sin | 2 | NA |
| 894 | 27.83 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 2 |
| 899 | 27.83 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 12 |
| 904 | 27.84 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 8 |
| 991 | 27.90 | wind | 5 | 43200 | > th | dose dependent | sin | 0 | NA |
| 999 | 27.90 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 17 |