BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0859300 Os03g0859300|AK105297
(383 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G66100.1 | chr5:26427639-26429772 FORWARD LENGTH=454 94 1e-19
AT4G35890.1 | chr4:16997433-17000410 FORWARD LENGTH=524 91 8e-19
AT5G21160.3 | chr5:7198817-7203879 REVERSE LENGTH=834 78 8e-15
AT5G46250.1 | chr5:18755388-18758056 FORWARD LENGTH=423 53 2e-07
AT4G32720.1 | chr4:15787313-15789683 FORWARD LENGTH=434 50 3e-06
>AT5G66100.1 | chr5:26427639-26429772 FORWARD LENGTH=454
Length = 453
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 61/82 (74%)
Query: 239 LLKQIEFYFSKDNLCTDVFLRRNMDDQGWVNIALIAGFNKVQESTDDLQYIKDTIQSSSI 298
+L Q+E+YFS DNL D LR M+D+GWV + +IA F ++ E T+++Q I + ++SS +
Sbjct: 339 ILTQVEYYFSADNLSRDEHLRDQMNDEGWVPVRVIAAFRRLAELTNNIQTILEALRSSEV 398
Query: 299 LEMQDDKIRRQNDWNKWVIPRE 320
+E+Q + +RR+ DW+K+++PRE
Sbjct: 399 VEIQGETLRRRGDWDKYLLPRE 420
>AT4G35890.1 | chr4:16997433-17000410 FORWARD LENGTH=524
Length = 523
Score = 91.3 bits (225), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 61/81 (75%)
Query: 239 LLKQIEFYFSKDNLCTDVFLRRNMDDQGWVNIALIAGFNKVQESTDDLQYIKDTIQSSSI 298
L KQI++YFS +NL TD++LR M+++G+V + ++AGF KV E TD++Q I + +Q+S
Sbjct: 373 LHKQIQYYFSDENLITDIYLRGFMNNEGFVPLRVVAGFKKVAELTDNIQQIVEALQNSPH 432
Query: 299 LEMQDDKIRRQNDWNKWVIPR 319
+E+Q D IR++++W WV+ R
Sbjct: 433 VEVQGDFIRKRDNWQNWVLRR 453
>AT5G21160.3 | chr5:7198817-7203879 REVERSE LENGTH=834
Length = 833
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 55/81 (67%)
Query: 236 RANLLKQIEFYFSKDNLCTDVFLRRNMDDQGWVNIALIAGFNKVQESTDDLQYIKDTIQS 295
R +LKQ+E+YFS +NL D +L MD++GWV +IAGF +V+ T D+ +I +
Sbjct: 279 RDRVLKQVEYYFSDENLENDHYLISLMDEEGWVPTKIIAGFKRVKAMTMDVDFIVYALGF 338
Query: 296 SSILEMQDDKIRRQNDWNKWV 316
S+ +E+Q D+IR+++ W+ W+
Sbjct: 339 SNSVEVQGDQIRKRDKWSDWI 359
>AT5G46250.1 | chr5:18755388-18758056 FORWARD LENGTH=423
Length = 422
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%), Gaps = 4/74 (5%)
Query: 239 LLKQIEFYFSKDNLCTDVFLRRNM--DDQGWVNIALIAGFNKVQESTDDLQYIKDTIQSS 296
+++Q+E+YFS +NL TD FL M + +G+V I+ IA F+K+++ T D I ++ S
Sbjct: 107 IIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIVSALKES 166
Query: 297 SILEMQDD--KIRR 308
S L + D K++R
Sbjct: 167 SFLVVSADEKKVKR 180
>AT4G32720.1 | chr4:15787313-15789683 FORWARD LENGTH=434
Length = 433
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 16/93 (17%)
Query: 239 LLKQIEFYFSKDNLCTDVFLRRNM--DDQGWVNIALIAGFNKVQEST------------D 284
+L+Q+EFYFS NL D FL++ + + G V++ALI F+K++ D
Sbjct: 14 VLRQVEFYFSDSNLPIDDFLKKTVTESEDGLVSLALICSFSKMRGYLKLGDSKGDDIPED 73
Query: 285 DLQYIKDTIQSSSILEMQDD--KIRRQNDWNKW 315
++ + DT+++SS L++ DD K+ R + K
Sbjct: 74 TIKAVADTLRTSSALKISDDGKKVGRSTELLKL 106
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.129 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,233,192
Number of extensions: 185665
Number of successful extensions: 396
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 398
Number of HSP's successfully gapped: 5
Length of query: 383
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 283
Effective length of database: 8,364,969
Effective search space: 2367286227
Effective search space used: 2367286227
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 112 (47.8 bits)