BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0148800 Os03g0148800|AK068803
(651 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0148800 Zinc finger, C2H2-type domain containing protein 1179 0.0
Os01g0907400 Transcription factor jumonji, JmjN domain cont... 159 4e-39
Os12g0279100 Transcription factor jumonji, JmjN domain cont... 144 2e-34
>Os03g0148800 Zinc finger, C2H2-type domain containing protein
Length = 651
Score = 1179 bits (3050), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 581/605 (96%), Positives = 581/605 (96%)
Query: 47 RSASPQVVAPDAIKQKGHIAGRALEPELRSDPRVGLAERTPVPEDQGRDIDDGPPAKRSL 106
RSASPQVVAPDAIKQKGHIAGRALEPELRSDPRVGLAERTPVPEDQGRDIDDGPPAKRSL
Sbjct: 47 RSASPQVVAPDAIKQKGHIAGRALEPELRSDPRVGLAERTPVPEDQGRDIDDGPPAKRSL 106
Query: 107 TFTDAAARLEGSGNVGAGVATEPAARLGAPVANGAVSGQEDRAATCLADESAAELIATGV 166
TFTDAAARLEGSGNVGAGVATEPAARLGAPVANGAVSGQEDRAATCLADESAAELIATGV
Sbjct: 107 TFTDAAARLEGSGNVGAGVATEPAARLGAPVANGAVSGQEDRAATCLADESAAELIATGV 166
Query: 167 TSLVTGATAEPEVLKGASFANTNVTEPRVSERVPLVREAATEPEAEVSMREVTEGALPDG 226
TSLVTGATAEPEVLKGASFANTNVTEPRVSERVPLVREAATEPEAEVSMREVTEGALPDG
Sbjct: 167 TSLVTGATAEPEVLKGASFANTNVTEPRVSERVPLVREAATEPEAEVSMREVTEGALPDG 226
Query: 227 EGAAKLEITGGLSRESADKMEVTKGISLVTEASADSELAQRVPTEPGVELSLXXXXXXXX 286
EGAAKLEITGGLSRESADKMEVTKGISLVTEASADSELAQRVPTEPGVELSL
Sbjct: 227 EGAAKLEITGGLSRESADKMEVTKGISLVTEASADSELAQRVPTEPGVELSLPEVTERVP 286
Query: 287 XXXXDFTELGDTFSGLHITGFASLDNEGSVEQEVTGSGSLVNEATEMEVKEGTCIFTRVA 346
DFTELGDTFSGLHITGFASLDNEGSVEQEVTGSGSLVNEATEMEVKEGTCIFTRVA
Sbjct: 287 VVTEDFTELGDTFSGLHITGFASLDNEGSVEQEVTGSGSLVNEATEMEVKEGTCIFTRVA 346
Query: 347 TELGDTGRVSACSGDGDIALDEPRPPDCVSEVANVNVGNAGEAVASKVQPFRDNAESVGG 406
TELGDTGRVSACSGDGDIALDEPRPPDCVSEVANVNVGNAGEAVASKVQPFRDNAESVGG
Sbjct: 347 TELGDTGRVSACSGDGDIALDEPRPPDCVSEVANVNVGNAGEAVASKVQPFRDNAESVGG 406
Query: 407 SINSTGNGHVSSKSPTADEAAPPGGCTDTPSVSCLSDIVARSIGKSGRTDIICYVRRRGK 466
SINSTGNGHVSSKSPTADEAAPPGGCTDTPSVSCLSDIVARSIGKSGRTDIICYVRRRGK
Sbjct: 407 SINSTGNGHVSSKSPTADEAAPPGGCTDTPSVSCLSDIVARSIGKSGRTDIICYVRRRGK 466
Query: 467 RKLXXXXXXXXXXXXDDSAICDQYDDKVASERTGPCESVTSTAVSVEIKIADIKRELEDN 526
RKL DDSAICDQYDDKVASERTGPCESVTSTAVSVEIKIADIKRELEDN
Sbjct: 467 RKLEMVEVKEENVEMDDSAICDQYDDKVASERTGPCESVTSTAVSVEIKIADIKRELEDN 526
Query: 527 STASKGKKKRAKRFQCEIDYCRMTFKNRAELSVHKKNTCTVKSCGRHFRSHKYLRRHQSI 586
STASKGKKKRAKRFQCEIDYCRMTFKNRAELSVHKKNTCTVKSCGRHFRSHKYLRRHQSI
Sbjct: 527 STASKGKKKRAKRFQCEIDYCRMTFKNRAELSVHKKNTCTVKSCGRHFRSHKYLRRHQSI 586
Query: 587 HNDDMPYKCPWEGCSMAFKWSWDRGEHFQVHAGKRPYKCTTPGCSKIYKFVSDFTRHKRR 646
HNDDMPYKCPWEGCSMAFKWSWDRGEHFQVHAGKRPYKCTTPGCSKIYKFVSDFTRHKRR
Sbjct: 587 HNDDMPYKCPWEGCSMAFKWSWDRGEHFQVHAGKRPYKCTTPGCSKIYKFVSDFTRHKRR 646
Query: 647 CKPQR 651
CKPQR
Sbjct: 647 CKPQR 651
>Os01g0907400 Transcription factor jumonji, JmjN domain containing protein
Length = 1286
Score = 159 bits (403), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 83/112 (74%)
Query: 535 KRAKRFQCEIDYCRMTFKNRAELSVHKKNTCTVKSCGRHFRSHKYLRRHQSIHNDDMPYK 594
K+A + C+I+ C M+F+ + +LS+HK + C VK CG+ F SHKYL +H+ +H DD P
Sbjct: 1162 KQAVEYSCDIEGCSMSFRTKRDLSLHKSDICPVKGCGKKFFSHKYLLQHRKVHTDDRPLT 1221
Query: 595 CPWEGCSMAFKWSWDRGEHFQVHAGKRPYKCTTPGCSKIYKFVSDFTRHKRR 646
CPW+GC+MAFKW W R EH +VH G RPY C PGC++ ++FVSDF+RHKR+
Sbjct: 1222 CPWKGCNMAFKWPWARTEHLRVHTGDRPYVCHEPGCAQTFRFVSDFSRHKRK 1273
>Os12g0279100 Transcription factor jumonji, JmjN domain containing protein
Length = 1366
Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 63/148 (42%), Positives = 91/148 (61%), Gaps = 16/148 (10%)
Query: 513 EIKIADIKRELEDNSTASKGKKKRAK--------------RFQCEIDYCRMTFKNRAELS 558
E KI D+K ++ + GK+K +K +F C+I+ C M+F + +L
Sbjct: 1208 EDKIDDVK--VKSRGKSQNGKRKGSKHQATDGLRAGNKVAKFPCDIEGCDMSFSTQQDLL 1265
Query: 559 VHKKNTCTVKSCGRHFRSHKYLRRHQSIHNDDMPYKCPWEGCSMAFKWSWDRGEHFQVHA 618
+HK++ C VK C + F HKYL +H+ +H D+ P KC W+GC AFKW W R EH +VH
Sbjct: 1266 LHKRDICPVKGCKKKFFCHKYLLQHRKVHIDERPLKCTWKGCKKAFKWPWARTEHMRVHT 1325
Query: 619 GKRPYKCTTPGCSKIYKFVSDFTRHKRR 646
G RPY+C PGC + ++FVSDF+RHKR+
Sbjct: 1326 GVRPYECQEPGCGQTFRFVSDFSRHKRK 1353
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.129 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,601,180
Number of extensions: 977487
Number of successful extensions: 2572
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2562
Number of HSP's successfully gapped: 4
Length of query: 651
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 544
Effective length of database: 11,448,903
Effective search space: 6228203232
Effective search space used: 6228203232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 159 (65.9 bits)