Os03g0148800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, C2H2-type domain containing protein.
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Os03g0148800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, C2H2-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.99 | 0.329 | 7.83 | 0.218 | 0.901 | 1.03 | -0.906 | 0.804 | -0.256 | 7.6 | 18.9 | 11 | -- | -- |
| 49.53 | 0.328 | 7.85 | 0.087 | 0.909 | 1.07 | -0.885 | -- | -0.299 | 7.49 | 19.97 | 12 | -- | -- |
| 51.26 | 0.333 | 7.83 | 0.171 | 0.899 | 1.07 | -- | 0.7 | -0.263 | 7.59 | 18.6 | 10 | -- | -- |
| 51.68 | 0.335 | 7.85 | 0.0655 | 0.906 | 1.07 | -- | -- | -0.295 | 7.56 | 19.9 | 12 | -- | -- |
| 93.9 | 0.454 | 7.86 | 0.175 | -- | 1.03 | -- | 0.585 | -0.241 | -- | 17.76 | 6 | -- | -- |
| 67.39 | 0.385 | 7.81 | 0.312 | 0.901 | -- | -0.594 | -- | -0.112 | 9.1 | -- | -- | -- | -- |
| 68.56 | 0.388 | 7.81 | 0.292 | 0.9 | -- | -- | -- | -0.111 | 9.24 | -- | -- | -- | -- |
| 94.26 | 0.454 | 7.87 | 0.0825 | -- | 1.04 | -- | -- | -0.267 | -- | 17.9 | 6 | -- | -- |
| 51.78 | 0.335 | 7.85 | -- | 0.909 | 1.09 | -- | -- | -0.306 | 7.52 | 19.9 | 12 | -- | -- |
| 115.68 | 0.503 | 7.83 | 0.289 | -- | -- | -- | -- | -0.107 | -- | -- | -- | -- | -- |
| 70.82 | 0.394 | 7.81 | -- | 0.9 | -- | -- | -- | -0.144 | 9.22 | -- | -- | -- | -- |
| 94.3 | 0.452 | 7.87 | -- | -- | 1.06 | -- | -- | -0.282 | -- | 17.78 | 2 | -- | -- |
| 117.88 | 0.507 | 7.84 | -- | -- | -- | -- | -- | -0.139 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.46 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 5 | 48.87 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 7 | 49.09 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 11 | 49.14 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 20 |
| 13 | 49.23 | temperature | 20 | 90 | > th | dose dependent | rect. | 6 | 19 |
| 20 | 49.35 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 29 | 49.47 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 68 | 50.08 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 89 | 50.33 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 92 | 50.38 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 95 | 50.40 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 104 | 50.48 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 109 | 50.57 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 113 | 50.59 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 120 | 50.65 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 130 | 50.78 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 135 | 50.81 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 156 | 51.06 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 166 | 51.26 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 169 | 51.31 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 175 | 51.39 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 15 |
| 182 | 51.42 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 184 | 51.44 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 193 | 51.48 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 198 | 51.51 | temperature | 20 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 214 | 51.63 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 229 | 51.77 | temperature | 20 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 235 | 51.81 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 13 |
| 249 | 51.93 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 316 | 52.35 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 332 | 52.40 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 362 | 52.50 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 15 |
| 435 | 52.70 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 515 | 52.88 | temperature | 20 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 541 | 52.94 | temperature | 15 | 10 | > th | dose dependent | sin | 20 | NA |
| 585 | 53.05 | temperature | 25 | 90 | > th | dose independent | rect. | 12 | 23 |
| 699 | 53.28 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 9 |
| 751 | 53.40 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 814 | 53.51 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 9 |