BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0147100 Os03g0147100|AK120920
(282 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0147100 Retrotransposon gag protein family protein 565 e-161
AK106323 107 7e-24
Os02g0522000 Retrotransposon gag protein family protein 101 8e-22
Os10g0383200 Chromo domain containing protein 91 9e-19
Os01g0341500 74 2e-13
Os05g0374700 73 3e-13
Os09g0387900 72 6e-13
Os12g0428300 Retrotransposon gag protein family protein 70 2e-12
Os05g0241900 Retrotransposon gag protein family protein 68 8e-12
Os12g0450264 67 2e-11
Os04g0666200 66 3e-11
Os10g0520550 65 4e-11
Os10g0558300 65 5e-11
Os06g0527166 65 5e-11
>Os03g0147100 Retrotransposon gag protein family protein
Length = 282
Score = 565 bits (1456), Expect = e-161, Method: Compositional matrix adjust.
Identities = 271/282 (96%), Positives = 271/282 (96%)
Query: 1 NPRKGNLPLSVCWIRNRGSGSRCVKLEKPRYQTKQAFKIMENEAKLDLILKKLTETDSKL 60
NPRKGNLPLSVCWIRNRGSGSRCVKLEKPRYQTKQAFKIMENEAKLDLILKKLTETDSKL
Sbjct: 1 NPRKGNLPLSVCWIRNRGSGSRCVKLEKPRYQTKQAFKIMENEAKLDLILKKLTETDSKL 60
Query: 61 VDLEKNSRADMLNLKTSVDSWKPQLEKKVTDLATTVGNXXXXXXXXXXXNKAEPKPDLTA 120
VDLEKNSRADMLNLKTSVDSWKPQLEKKVTDLATTVGN NKAEPKPDLTA
Sbjct: 61 VDLEKNSRADMLNLKTSVDSWKPQLEKKVTDLATTVGNLQLQFDQLQLLNKAEPKPDLTA 120
Query: 121 QLGARNAAEIRAEVLGSHPQSPPPANGTNSILFSTPAPYFHDPAMRTAFTGSAVGTSTGL 180
QLGARNAAEIRAEVLGSHPQSPPPANGTNSILFSTPAPYFHDPAMRTAFTGSAVGTSTGL
Sbjct: 121 QLGARNAAEIRAEVLGSHPQSPPPANGTNSILFSTPAPYFHDPAMRTAFTGSAVGTSTGL 180
Query: 181 PPMPCPQFDGDNPQMWRENCEAYFDTYGVSPAHWVRIATLNFSGNASFWLQSVRSQLIGV 240
PPMPCPQFDGDNPQMWRENCEAYFDTYGVSPAHWVRIATLNFSGNASFWLQSVRSQLIGV
Sbjct: 181 PPMPCPQFDGDNPQMWRENCEAYFDTYGVSPAHWVRIATLNFSGNASFWLQSVRSQLIGV 240
Query: 241 TWVELCEKVCAKFSRDRHQQLIRQYIHIRQTGSVTEYVDKFD 282
TWVELCEKVCAKFSRDRHQQLIRQYIHIRQTGSVTEYVDKFD
Sbjct: 241 TWVELCEKVCAKFSRDRHQQLIRQYIHIRQTGSVTEYVDKFD 282
>AK106323
Length = 400
Score = 107 bits (268), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 64/103 (62%)
Query: 180 LPPMPCPQFDGDNPQMWRENCEAYFDTYGVSPAHWVRIATLNFSGNASFWLQSVRSQLIG 239
+P + P+FDG + Q WR CE YFD P WVRIAT+ F G A+ WL+S R+ L
Sbjct: 56 VPKLDFPKFDGSDSQEWRMKCEHYFDVNNTFPGLWVRIATIYFLGRAASWLRSSRAHLRF 115
Query: 240 VTWVELCEKVCAKFSRDRHQQLIRQYIHIRQTGSVTEYVDKFD 282
W + C V AKF RD+H+ LIRQ I+Q G+V E+ ++FD
Sbjct: 116 PMWEDFCAAVSAKFDRDQHENLIRQMDSIKQNGTVWEFYERFD 158
>Os02g0522000 Retrotransposon gag protein family protein
Length = 380
Score = 101 bits (251), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 62/103 (60%)
Query: 180 LPPMPCPQFDGDNPQMWRENCEAYFDTYGVSPAHWVRIATLNFSGNASFWLQSVRSQLIG 239
LP P+FDGDNP++W++N E YFD Y V W ATL+F GNA+ WLQ+ +
Sbjct: 154 LPKTNFPRFDGDNPKLWKKNSEKYFDMYQVPYDSWANFATLHFVGNAALWLQTYEALHSV 213
Query: 240 VTWVELCEKVCAKFSRDRHQQLIRQYIHIRQTGSVTEYVDKFD 282
TW ELC V KF +D++Q+ + + +RQT V Y KF+
Sbjct: 214 ETWPELCVVVHNKFGKDKYQEHLEELESLRQTSGVDAYYSKFE 256
>Os10g0383200 Chromo domain containing protein
Length = 400
Score = 90.9 bits (224), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 59/90 (65%)
Query: 180 LPPMPCPQFDGDNPQMWRENCEAYFDTYGVSPAHWVRIATLNFSGNASFWLQSVRSQLIG 239
LP P+FDGDNP++W++N E YF+ Y VS +W + +TL+F GNA+ WLQ+ +
Sbjct: 143 LPKSDFPKFDGDNPKLWKKNSEKYFEMYQVSYENWAKFSTLHFVGNAALWLQTNEALHSV 202
Query: 240 VTWVELCEKVCAKFSRDRHQQLIRQYIHIR 269
TW ELC V +KF +D++Q+ + + +R
Sbjct: 203 ETWPELCIAVHSKFGKDKYQEHLEELEGLR 232
>Os01g0341500
Length = 420
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 60/107 (56%)
Query: 175 GTSTGLPPMPCPQFDGDNPQMWRENCEAYFDTYGVSPAHWVRIATLNFSGNASFWLQSVR 234
G + +P M P+FDG + +W +NCE YF Y ++ V A+LN G+A+ W Q+ +
Sbjct: 123 GRRSWVPKMDFPKFDGTDVCVWVDNCETYFALYQITEGFKVSAASLNMIGDAAHWYQAWK 182
Query: 235 SQLIGVTWVELCEKVCAKFSRDRHQQLIRQYIHIRQTGSVTEYVDKF 281
+ TW +L E V +F + + + + + + QTG+V+EY KF
Sbjct: 183 QERGWPTWEQLREAVLNEFEINIKRAKMEELLLLTQTGTVSEYRSKF 229
>Os05g0374700
Length = 466
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 61/130 (46%)
Query: 153 FSTPAPYFHDPAMRTAFTGSAVGTSTGLPPMPCPQFDGDNPQMWRENCEAYFDTYGVSPA 212
F T + + A + V + LP M P+FDG + ++W + CE YFD Y +
Sbjct: 209 FHTRPVFIRNEAESSQGFDQGVRAKSCLPKMDFPRFDGSDVRIWLDMCETYFDMYQIPAM 268
Query: 213 HWVRIATLNFSGNASFWLQSVRSQLIGVTWVELCEKVCAKFSRDRHQQLIRQYIHIRQTG 272
V A L+ SGN + W QS + W + V +F ++ ++ +RQTG
Sbjct: 269 FKVSAAVLHMSGNVAQWYQSFKLVEEICDWSQFRYAVALEFESTAQREKVQALQTLRQTG 328
Query: 273 SVTEYVDKFD 282
SV +Y +FD
Sbjct: 329 SVADYKSQFD 338
>Os09g0387900
Length = 268
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 52/103 (50%)
Query: 180 LPPMPCPQFDGDNPQMWRENCEAYFDTYGVSPAHWVRIATLNFSGNASFWLQSVRSQLIG 239
+P M P+FDG + +W +NCE YF Y + V A+LN G AS W ++ + ++
Sbjct: 139 MPKMDFPKFDGPDASVWVDNCETYFAMYQIPAGFKVSAASLNLLGKASHWYKAWKQKVGL 198
Query: 240 VTWVELCEKVCAKFSRDRHQQLIRQYIHIRQTGSVTEYVDKFD 282
W E + V +F H ++QTGSV E+ +FD
Sbjct: 199 HVWEEFRDAVVKEFDCGTHHIKANAMFELKQTGSVDEHKSQFD 241
>Os12g0428300 Retrotransposon gag protein family protein
Length = 545
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 55/102 (53%)
Query: 181 PPMPCPQFDGDNPQMWRENCEAYFDTYGVSPAHWVRIATLNFSGNASFWLQSVRSQLIGV 240
P M P+FDG + ++W +NCE YF Y ++ V A+LN G+A+ W Q+ + +
Sbjct: 149 PKMDFPRFDGTDVRVWLDNCETYFGFYQITEGFQVSAASLNMIGDAANWYQAWKLETGWH 208
Query: 241 TWVELCEKVCAKFSRDRHQQLIRQYIHIRQTGSVTEYVDKFD 282
W L V +F + + + + + QTGSVTEY KF+
Sbjct: 209 NWESLKTAVLNEFEVNLESVKMDELLLLTQTGSVTEYRSKFN 250
>Os05g0241900 Retrotransposon gag protein family protein
Length = 578
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 181 PPMPCPQFDGDNPQMWRENCEAYFDTYGVSPAHWVRIATLNFSGNASFWLQSVRSQLIGV 240
P + P F G++P W + CE +F+ G WV +A + +G A W + +
Sbjct: 96 PRLEIPLFSGEDPIDWLKQCEKFFEITGTPLDQWVNLAVAHLNGRALKWFGGIGLPWQVI 155
Query: 241 TWVELCEKVCAKFSRDRHQQLIRQYIHIRQTG-SVTEYVDKFD 282
W + C VC +FS + I + +++Q G +V +Y+DKF+
Sbjct: 156 AWPQWCSMVCTRFSAASEHEAIELFQNVKQFGTTVEQYIDKFE 198
>Os12g0450264
Length = 640
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Query: 181 PPMPCPQFDGDNPQMWRENCEAYFDTYGVSPAHWVRIATLNFSGNASFWLQSVRSQLIGV 240
P + P F+GD+P W + CE +F+ G WV ++ +F G A+ W + V +
Sbjct: 138 PRLEIPLFNGDDPIDWLKQCEKFFELTGTPMDQWVNMSLAHFQGRAAKWFRGVGLPWQII 197
Query: 241 TWVELCEKVCAKFSRDRHQQLIRQYIHIRQTG-SVTEYVDKFD 282
+W + C + +FS + + + +++Q G +V +Y+DKF+
Sbjct: 198 SWPQWCAMISTRFSAANVHEAVELFQNVKQYGMTVEQYIDKFE 240
>Os04g0666200
Length = 500
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%)
Query: 186 PQFDGDNPQMWRENCEAYFDTYGVSPAHWVRIATLNFSGNASFWLQSVRSQLIGVTWVEL 245
P F+GD P+ W E YF Y V +A ++ SG A W++S ++W E
Sbjct: 293 PTFEGDYPESWIRKAEKYFSLYQTPEEDKVLLAEVHISGRADQWIESSAVPTASLSWPEF 352
Query: 246 CEKVCAKFSRDRHQQLIRQYIHIRQTGSVTEYVDKFD 282
VC +F+ ++ + +++Q GSV Y+DKF+
Sbjct: 353 KTMVCQRFAAKSKIEITETFRNLKQYGSVDSYIDKFE 389
>Os10g0520550
Length = 364
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 52/103 (50%)
Query: 180 LPPMPCPQFDGDNPQMWRENCEAYFDTYGVSPAHWVRIATLNFSGNASFWLQSVRSQLIG 239
LP M P+FDG + ++W CE YFD Y ++ V L+ SGNA+ W S +
Sbjct: 119 LPKMDFPRFDGSDVRIWLNMCETYFDMYQITQNFKVSAVVLHMSGNAAQWYHSYKLVNEV 178
Query: 240 VTWVELCEKVCAKFSRDRHQQLIRQYIHIRQTGSVTEYVDKFD 282
+W + V +F ++ + + QTG+VTEY +FD
Sbjct: 179 NSWDQFRMAVATEFEGVVEREKMSALDTLTQTGTVTEYKQQFD 221
>Os10g0558300
Length = 581
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 181 PPMPCPQFDGDNPQMWRENCEAYFDTYGVSPAHWVRIATLNFSGNASFWLQSVRSQLIGV 240
P + P F G+ P W + CE +F+ G WV +A + G A W + + +
Sbjct: 240 PRLEIPLFGGEEPVDWLKQCEKFFEITGTPVDQWVNLALAHLQGRAIKWYRGIGIPWQLI 299
Query: 241 TWVELCEKVCAKFSRDRHQQLIRQYIHIRQTG-SVTEYVDKFD 282
+W + C VC +FS + + + +++Q G +V +Y+DKF+
Sbjct: 300 SWPQWCAMVCTRFSAADVHEAVELFQNVKQHGQTVDQYIDKFE 342
>Os06g0527166
Length = 303
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 58/130 (44%), Gaps = 2/130 (1%)
Query: 153 FSTPAPYFHDPAMRTAFTGSAVGTSTGLPPMPCPQFDGDNPQMWRENCEAYFDTYGVSPA 212
F + A Y+ D A G + LP M +F+G + +W + CE YF Y +S
Sbjct: 65 FGSHAHYWVDGEGHRAQDGGR--AKSYLPKMDFLRFEGPDVHIWIDMCETYFKMYQISAT 122
Query: 213 HWVRIATLNFSGNASFWLQSVRSQLIGVTWVELCEKVCAKFSRDRHQQLIRQYIHIRQTG 272
WV L+ GNA+ W QSV+ W V +F + H++ + QTG
Sbjct: 123 FWVSATILHMYGNAAQWYQSVKLVEDVSDWAHFRYVVIHEFEGNTHREKTLALRLLTQTG 182
Query: 273 SVTEYVDKFD 282
+V EY + D
Sbjct: 183 TVAEYKQQID 192
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.131 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,265,316
Number of extensions: 449713
Number of successful extensions: 1649
Number of sequences better than 1.0e-10: 17
Number of HSP's gapped: 1646
Number of HSP's successfully gapped: 17
Length of query: 282
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 182
Effective length of database: 11,814,401
Effective search space: 2150220982
Effective search space used: 2150220982
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)