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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0147100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Retrotransposon gag protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.27 (0.0326) R2 : 0.168
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.718 (0.0777) R2dC : 0.157 R2C : 0.153
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.173 (0.0685) R2dN8 : 0.015 R2N8 : 0.0117
σ : 0.614
deviance : 172.16
__
_____
C
peak time of C : 23.3
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
151.21 0.578 4.3 -0.901 0.756 0.0943 -0.113 -3.02 0.0291 23.4 38.01 1668 -- --
155.33 0.58 4.26 -0.398 0.659 0.568 -0.0228 -- 0.179 23.9 69.05 1904 -- --
151.08 0.572 4.29 -0.87 0.747 0.0742 -- -3.23 0.0483 23.3 42.62 1636 -- --
153.29 0.577 4.26 -0.344 0.755 0.99 -- -- 0.187 23.4 68.53 1864 -- --
184.28 0.632 4.25 -0.77 -- 0.358 -- -2.15 0.109 -- 45.85 1050 -- --
160.97 0.595 4.28 -0.651 0.725 -- 0.0298 -- 0.1 23.3 -- -- -- --
160.97 0.594 4.28 -0.652 0.725 -- -- -- 0.1 23.3 -- -- -- --
187.59 0.638 4.24 -0.34 -- 0.883 -- -- 0.194 -- 69.46 3238 -- --
155.58 0.581 4.25 -- 0.756 1.19 -- -- 0.241 23.4 68.83 1885 -- --
193.87 0.651 4.27 -0.633 -- -- -- -- 0.107 -- -- -- -- --
172.16 0.614 4.27 -- 0.718 -- -- -- 0.173 23.3 -- -- -- --
189.33 0.641 4.23 -- -- 1.18 -- -- 0.247 -- 69.44 3552 -- --
204.45 0.667 4.25 -- -- -- -- -- 0.177 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 143.51 wind 1.0 30 < th dose independent rect. 2 1
3 143.83 wind 3.0 30 < th dose dependent rect. 2 1
5 143.99 atmosphere 1005.0 30 > th dose independent rect. 2 1
7 144.02 atmosphere 1005.0 30 > th dose dependent rect. 2 1
12 144.07 temperature 25.0 30 < th dose independent rect. 2 1
19 144.15 temperature 10.0 30 > th dose independent rect. 2 1
22 144.15 humidity 50.0 30 > th dose independent rect. 2 1
26 144.15 atmosphere 1010.0 30 < th dose independent rect. 2 1
28 144.15 radiation 1.0 30 < th dose independent rect. 2 1
33 144.15 precipitation 0.1 30 < th dose independent rect. 2 1
34 144.15 temperature 10.0 30 > th dose independent rect. 3 23
35 144.15 radiation 1.0 30 < th dose dependent rect. 2 1
40 144.15 precipitation 0.1 30 < th dose dependent rect. 2 1
41 144.18 temperature 10.0 30 > th dose dependent rect. 2 1
43 144.25 humidity 50.0 30 > th dose dependent rect. 2 1
46 144.32 temperature 30.0 30 < th dose dependent rect. 2 1
49 144.42 atmosphere 1015.0 30 < th dose dependent rect. 2 1
55 144.62 radiation 1.0 43200 < th dose dependent rect. 3 1
70 145.32 humidity 50.0 10 > th dose independent rect. 3 23
71 145.35 wind 9.0 1440 < th dose independent rect. 3 1
72 145.35 temperature 10.0 1440 > th dose independent rect. 3 1
75 145.35 temperature 30.0 1440 < th dose independent rect. 3 1
79 145.35 humidity 50.0 1440 > th dose independent rect. 3 1
88 145.35 atmosphere 995.0 1440 > th dose independent rect. 3 1
89 145.35 radiation 1.0 1440 < th dose independent rect. 3 1
109 145.35 temperature 10.0 1440 > th dose independent rect. 4 23
112 145.35 radiation 1.0 1440 < th dose dependent rect. 3 1
154 145.51 wind 1.0 30 > th dose independent rect. 2 1
158 145.81 atmosphere 995.0 30 > th dose independent rect. 3 23
170 146.54 wind 9.0 30 < th dose independent rect. 3 23
177 147.39 precipitation 0.1 30 < th dose independent rect. 3 23
178 147.39 precipitation 0.1 30 < th dose dependent rect. 3 23
188 148.86 temperature 20.0 270 > th dose dependent rect. 23 1
195 149.65 temperature 20.0 90 > th dose dependent rect. 23 4
198 149.84 wind 3.0 10 < th dose dependent rect. 24 3
199 149.85 wind 1.0 30 < th dose independent rect. 17 10
201 149.87 wind 1.0 30 < th dose independent rect. 21 6
220 150.26 wind 1.0 30 < th dose independent rect. 24 3
229 150.45 wind 1.0 10 < th dose independent rect. 6 21
238 150.61 temperature 25.0 270 > th dose independent rect. 23 3
248 150.87 wind 3.0 10 < th dose dependent rect. 20 7
249 150.88 temperature 20.0 720 > th dose independent rect. 4 2
254 150.93 wind 1.0 30 < th dose dependent rect. 17 10
256 150.95 temperature 25.0 270 > th dose independent rect. 23 1
268 151.08 radiation 10.0 10 < th dose independent rect. 3 23
277 151.16 wind 3.0 10 < th dose dependent rect. 13 14
282 151.18 radiation 40.0 90 < th dose dependent rect. 3 9
296 151.38 radiation 40.0 90 < th dose independent rect. 3 9
300 151.41 humidity 60.0 90 > th dose independent rect. 3 10
304 151.46 radiation 40.0 30 < th dose dependent rect. 3 23
306 151.47 temperature 25.0 720 < th dose dependent rect. 17 3
320 151.72 humidity 50.0 30 > th dose dependent rect. 3 23
324 151.77 wind 1.0 10 > th dose independent rect. 16 14
326 151.78 radiation 40.0 90 < th dose independent rect. 3 22
327 151.80 temperature 30.0 720 < th dose dependent rect. 6 1
328 151.82 temperature 15.0 720 > th dose dependent rect. 3 3
333 151.90 temperature 15.0 90 > th dose dependent rect. 19 9
339 151.99 temperature 15.0 270 > th dose dependent rect. 17 10
344 152.01 wind 1.0 30 < th dose dependent rect. 9 18
354 152.10 temperature 20.0 10 > th dose dependent rect. 20 8
361 152.18 radiation 40.0 1440 < th dose independent rect. 15 9
362 152.22 humidity 60.0 90 > th dose independent rect. 3 20
366 152.26 temperature 20.0 720 < th dose independent rect. 5 2
369 152.27 atmosphere 1015.0 90 < th dose dependent rect. 3 10
387 152.37 humidity 60.0 90 > th dose independent rect. 3 14
394 152.43 atmosphere 1010.0 90 < th dose independent rect. 3 10
397 152.45 radiation 40.0 1440 < th dose independent rect. 15 16
399 152.46 wind 9.0 90 < th dose dependent rect. 13 14
400 152.47 temperature 15.0 90 > th dose independent rect. 13 14
411 152.54 radiation 40.0 1440 < th dose independent rect. 15 12
418 152.64 radiation 40.0 1440 < th dose independent rect. 15 3
422 152.68 radiation 40.0 1440 < th dose independent rect. 15 6
445 152.80 temperature 30.0 90 < th dose dependent rect. 18 13
451 152.83 radiation 40.0 90 < th dose independent rect. 3 20
455 152.85 humidity 60.0 90 > th dose independent rect. 3 16
458 152.86 atmosphere 1015.0 1440 < th dose independent rect. 3 1
467 152.89 radiation 40.0 1440 < th dose independent rect. 15 1
479 152.96 radiation 10.0 90 < th dose independent rect. 3 9
480 152.96 atmosphere 1010.0 30 < th dose independent rect. 13 14
484 152.98 humidity 90.0 270 < th dose independent rect. 23 1
489 153.02 temperature 20.0 10 > th dose independent rect. 23 5
494 153.04 precipitation 0.1 4320 > th dose independent rect. 4 10
495 153.04 precipitation 0.1 4320 < th dose independent rect. 4 10
496 153.04 temperature 15.0 10 > th dose independent rect. 6 22
498 153.04 precipitation 0.1 4320 < th dose dependent rect. 4 10
500 153.06 atmosphere 1010.0 30 < th dose independent rect. 23 4
517 153.09 humidity 50.0 90 > th dose dependent rect. 3 10
524 153.12 temperature 15.0 90 > th dose independent rect. 6 21
529 153.14 precipitation 0.1 4320 > th dose dependent rect. 4 10
542 153.20 precipitation 0.1 4320 < th dose independent rect. 5 3
545 153.20 precipitation 0.1 4320 < th dose dependent rect. 5 3
547 153.21 temperature 15.0 90 > th dose independent rect. 17 10
551 153.22 radiation 40.0 1440 > th dose independent rect. 15 1
601 153.30 wind 9.0 90 < th dose dependent rect. 17 10
610 153.32 precipitation 0.1 4320 > th dose dependent rect. 4 3
613 153.33 precipitation 0.1 4320 > th dose independent rect. 4 3
615 153.33 radiation 40.0 1440 > th dose dependent rect. 14 21
617 153.34 atmosphere 1010.0 270 < th dose independent rect. 23 1
633 153.35 atmosphere 1005.0 90 > th dose dependent rect. 24 15
638 153.36 radiation 40.0 1440 > th dose dependent rect. 14 23
640 153.37 humidity 60.0 90 > th dose independent rect. 15 22
641 153.37 temperature 20.0 720 > th dose dependent rect. 3 5
652 153.39 wind 1.0 10 > th dose independent sin 12 NA
690 153.47 radiation 40.0 90 < th dose independent rect. 3 14
707 153.49 precipitation 0.1 1440 < th dose independent rect. 23 1
710 153.49 precipitation 0.1 1440 < th dose dependent rect. 23 1
719 153.51 radiation 40.0 1440 > th dose dependent sin 12 NA
728 153.53 temperature 20.0 10 > th dose independent rect. 20 8
784 153.63 temperature 15.0 90 > th dose independent rect. 19 8
797 153.66 radiation 40.0 90 < th dose independent rect. 15 22
813 153.69 radiation 40.0 1440 > th dose dependent sin 7 NA
829 153.71 precipitation 0.1 14400 > th dose dependent rect. 13 1
833 153.72 humidity 60.0 270 > th dose independent rect. 1 22
844 153.73 radiation 1.0 90 < th dose dependent rect. 6 21
852 153.75 temperature 15.0 10 > th dose independent rect. 23 23
867 153.77 radiation 10.0 14400 < th dose dependent rect. 24 4
893 153.78 radiation 40.0 1440 > th dose dependent rect. 8 5
945 153.85 temperature 20.0 10 > th dose independent rect. 17 11
951 153.86 wind 9.0 90 < th dose dependent rect. 3 10
957 153.87 temperature 15.0 720 > th dose dependent rect. 15 3
962 153.88 humidity 70.0 4320 > th dose independent rect. 22 2
966 153.88 radiation 40.0 1440 > th dose dependent no NA NA
968 153.88 radiation 40.0 1440 > th dose dependent rect. 8 8