BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0143700 Os03g0143700|AK066360
(901 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0143700 Conserved hypothetical protein 1819 0.0
Os04g0506900 Conserved hypothetical protein 417 e-116
Os02g0816400 Conserved hypothetical protein 287 2e-77
Os03g0280700 Hypothetical protein 96 1e-19
Os02g0617100 Conserved hypothetical protein 92 1e-18
>Os03g0143700 Conserved hypothetical protein
Length = 901
Score = 1819 bits (4711), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 882/901 (97%), Positives = 882/901 (97%)
Query: 1 MINLIDLSAGASARVATRDGSPVRETQSERKEYADLKXXXXXXXXXXXXXXXXXXXPMKV 60
MINLIDLSAGASARVATRDGSPVRETQSERKEYADLK PMKV
Sbjct: 1 MINLIDLSAGASARVATRDGSPVRETQSERKEYADLKTVTGSVRRSSSDRSCGSGTPMKV 60
Query: 61 LIAQEMAKEGDTNQKTTSVVAKLMGLDDDAALPKPVQPSNNRRRFPDGHLSAMLARVNNQ 120
LIAQEMAKEGDTNQKTTSVVAKLMGLDDDAALPKPVQPSNNRRRFPDGHLSAMLARVNNQ
Sbjct: 61 LIAQEMAKEGDTNQKTTSVVAKLMGLDDDAALPKPVQPSNNRRRFPDGHLSAMLARVNNQ 120
Query: 121 MSFDNHTGFVENMEYKDVYEVGYQPPSCEHLSNEFPQRRRPHEDHDKKRMDLVRQKFVEA 180
MSFDNHTGFVENMEYKDVYEVGYQPPSCEHLSNEFPQRRRPHEDHDKKRMDLVRQKFVEA
Sbjct: 121 MSFDNHTGFVENMEYKDVYEVGYQPPSCEHLSNEFPQRRRPHEDHDKKRMDLVRQKFVEA 180
Query: 181 KHLASHENLLQSKEFHEALEVLNSNKDLFLKFLEEPNSLFAKQSGEFHSAPTSPQRKRIT 240
KHLASHENLLQSKEFHEALEVLNSNKDLFLKFLEEPNSLFAKQSGEFHSAPTSPQRKRIT
Sbjct: 181 KHLASHENLLQSKEFHEALEVLNSNKDLFLKFLEEPNSLFAKQSGEFHSAPTSPQRKRIT 240
Query: 241 VLKPTRSVELKGEKEIKRQQDQTVNGSRVERSNTHRRSHSGGGHAKAERLPQHTRIVILK 300
VLKPTRSVELKGEKEIKRQQDQTVNGSRVERSNTHRRSHSGGGHAKAERLPQHTRIVILK
Sbjct: 241 VLKPTRSVELKGEKEIKRQQDQTVNGSRVERSNTHRRSHSGGGHAKAERLPQHTRIVILK 300
Query: 301 PSTALTSMEHFQKNGHDNLDYSEAPVISRHLSDEINWSAQDMCHQHDESFRGCMQSNMFI 360
PSTALTSMEHFQKNGHDNLDYSEAPVISRHLSDEINWSAQDMCHQHDESFRGCMQSNMFI
Sbjct: 301 PSTALTSMEHFQKNGHDNLDYSEAPVISRHLSDEINWSAQDMCHQHDESFRGCMQSNMFI 360
Query: 361 RDRVYYGYAEEEGSSFSDSEIGSPTSRHSWEYIYRFSNPYFGSTLSHASCSPDSLVTREA 420
RDRVYYGYAEEEGSSFSDSEIGSPTSRHSWEYIYRFSNPYFGSTLSHASCSPDSLVTREA
Sbjct: 361 RDRVYYGYAEEEGSSFSDSEIGSPTSRHSWEYIYRFSNPYFGSTLSHASCSPDSLVTREA 420
Query: 421 KKHTSDRWPTVSSNEISQEKVLVRRSLSTLGEMLAMSDMKKKGAAEQVVTNTSNQLCSNE 480
KKHTSDRWPTVSSNEISQEKVLVRRSLSTLGEMLAMSDMKKKGAAEQVVTNTSNQLCSNE
Sbjct: 421 KKHTSDRWPTVSSNEISQEKVLVRRSLSTLGEMLAMSDMKKKGAAEQVVTNTSNQLCSNE 480
Query: 481 PRLAVPSKCSVDGDGESSLRKISRSKSVPVSSAAFDSLRLDDGCSNPEHEEPTSSKEEIK 540
PRLAVPSKCSVDGDGESSLRKISRSKSVPVSSAAFDSLRLDDGCSNPEHEEPTSSKEEIK
Sbjct: 481 PRLAVPSKCSVDGDGESSLRKISRSKSVPVSSAAFDSLRLDDGCSNPEHEEPTSSKEEIK 540
Query: 541 PKNGKSSLKGKISSFFLKRKKSGKDKLAPSPLGALGTRVPLASNASIVSSDVSQTEWTSL 600
PKNGKSSLKGKISSFFLKRKKSGKDKLAPSPLGALGTRVPLASNASIVSSDVSQTEWTSL
Sbjct: 541 PKNGKSSLKGKISSFFLKRKKSGKDKLAPSPLGALGTRVPLASNASIVSSDVSQTEWTSL 600
Query: 601 QDDVASENLEKFDIAPTVVPVNEPEATSSSKPPIITLEKALSFEIRNSHFDQPSPTSVLD 660
QDDVASENLEKFDIAPTVVPVNEPEATSSSKPPIITLEKALSFEIRNSHFDQPSPTSVLD
Sbjct: 601 QDDVASENLEKFDIAPTVVPVNEPEATSSSKPPIITLEKALSFEIRNSHFDQPSPTSVLD 660
Query: 661 ASFEDASEKSPNSSEHAIIAKQEPLSRSLPIGSIARTLSWDDSSQEATLCSAKGDSHEQD 720
ASFEDASEKSPNSSEHAIIAKQEPLSRSLPIGSIARTLSWDDSSQEATLCSAKGDSHEQD
Sbjct: 661 ASFEDASEKSPNSSEHAIIAKQEPLSRSLPIGSIARTLSWDDSSQEATLCSAKGDSHEQD 720
Query: 721 QHEFVEKILSSVGFDNEKTSDIFVRWHSHDFPLGTGVLDQFLERKVEDAKCRERRSNQRL 780
QHEFVEKILSSVGFDNEKTSDIFVRWHSHDFPLGTGVLDQFLERKVEDAKCRERRSNQRL
Sbjct: 721 QHEFVEKILSSVGFDNEKTSDIFVRWHSHDFPLGTGVLDQFLERKVEDAKCRERRSNQRL 780
Query: 781 LIDSVNAALLDIGQSKLWGAYPCTDPQVNNARRVATGEVLVVDEVWRLVKGWLSDDDGEK 840
LIDSVNAALLDIGQSKLWGAYPCTDPQVNNARRVATGEVLVVDEVWRLVKGWLSDDDGEK
Sbjct: 781 LIDSVNAALLDIGQSKLWGAYPCTDPQVNNARRVATGEVLVVDEVWRLVKGWLSDDDGEK 840
Query: 841 HMVNAEDNAGLVADWVVGKEIQGRSWPEALRLEVDEISTEICGEVLDELVGEAFSELVGC 900
HMVNAEDNAGLVADWVVGKEIQGRSWPEALRLEVDEISTEICGEVLDELVGEAFSELVGC
Sbjct: 841 HMVNAEDNAGLVADWVVGKEIQGRSWPEALRLEVDEISTEICGEVLDELVGEAFSELVGC 900
Query: 901 H 901
H
Sbjct: 901 H 901
>Os04g0506900 Conserved hypothetical protein
Length = 881
Score = 417 bits (1071), Expect = e-116, Method: Compositional matrix adjust.
Identities = 326/902 (36%), Positives = 476/902 (52%), Gaps = 93/902 (10%)
Query: 58 MKVLIAQEMAKEGDTNQKTTSVVAKLMGLDDDAALPKPVQPSNNRRRFPDGHLSAMLARV 117
M L+A EM+K ++ +K SVVA+LMGLDDD +P S+ RR H LA
Sbjct: 1 MNRLVAMEMSKGVESKRKPPSVVARLMGLDDDLPAKEPALQSS-RRNLRRSHSLDNLAAT 59
Query: 118 N----------NQMSFDNHTGFVENMEYKDVYEVGYQPPSCEH-LSNEFPQRRRPHEDHD 166
N ++ + + H G E +E+KDVYEV P H L FP R D
Sbjct: 60 NRPQQQQEQHYSRTTPNIHIGPKETVEFKDVYEVSEDPLKRHHILGQNFPWERSSGNKSD 119
Query: 167 KKRMDLVRQKFVEAKHLASHENLLQSKEFHEALEVLNSNKDLFLKFLEEPNSLFAKQSGE 226
R++ VRQKF+EAK LA++ENL+ SK+F EALEVL+SN++LFLKFLEEP+ F KQ
Sbjct: 120 T-RIEAVRQKFMEAKRLATNENLIHSKQFQEALEVLSSNRELFLKFLEEPSPAFLKQLDG 178
Query: 227 FHSAPTSPQRKRITVLKPTRSVELKGEKEIKRQQDQTVN-GSRVERSNTHRRSHSGGGHA 285
+ P P KRITVLKP +SVE G +E + Q +N + + TH+RS+S
Sbjct: 179 LDTTPAPPPTKRITVLKPIKSVENNGIRETRTH--QVINEENELVMGKTHQRSYSAD--- 233
Query: 286 KAERLPQHTRIVILKPS-------------TALTSMEHFQKNGHDNLDYSEAPVISRHLS 332
+ + TRIV+LKPS A S + + + H L + + SR L
Sbjct: 234 --DNFSKSTRIVVLKPSPGKPNRTGARLTARAAPSEQTRRIDFHGGLQDDASILGSREL- 290
Query: 333 DEINWSAQDMC---HQHDESFRGCMQSNMFIRDRVYYGYAE----EEGSSFSDSEIGSPT 385
++ S Q M H+ DES SN + D + +E +EG S SDS+ SP
Sbjct: 291 --LHGSVQHMPESRHRRDESLISSTYSNGYGGDESSFSGSEVDYIDEGGSPSDSDAVSPM 348
Query: 386 SRHSWEYIYRFSNPYFGSTLSHA-SCSPDSLVTREAKKHTSDRWPTVSSNEISQEKVLVR 444
SRHSW+YI R ++P+ ST S A S SP+S V REAKK S+RW VS NEI+QE+V +R
Sbjct: 349 SRHSWDYIRRHNSPHSASTFSRAHSHSPESSVIREAKKRLSERWAMVSYNEINQEQVPLR 408
Query: 445 RSLSTLGEMLAMSDMKKKGAAEQVVTNTSNQLCSNEPRLAVPSKCS-----VDGDGESSL 499
RS +TLGEML++ KK+ A +++ +SN+ E LA+ C D +G+SS
Sbjct: 409 RSSTTLGEMLSLQVAKKEEAVAGIISVSSNRSSGTENELAMKDACKSTLREYDENGKSSP 468
Query: 500 RKISRSKSVPVSSAAFDSLRLDDGCSNPEHEEPTSSKEEIKPKNGKSSLKGKISSFFL-K 558
R +++SKSVPVSS+ FD++ ++ +N E + K K K S GKISSFF
Sbjct: 469 RNLAKSKSVPVSSSIFDNVAVNAQSANSE----GTPKVFTKSGRAKLSFTGKISSFFFPG 524
Query: 559 RKKSGKDKLAPSP------LGALGTRVPLASNASIVSSDVSQTEWTSLQDDVASENLEKF 612
K+ K+K + S G +G VP + + ++ E + D A
Sbjct: 525 NKRPTKEKTSLSSDSSGEIFGCIGHMVPQSDH------NLGPDEQMAFCKDEA------- 571
Query: 613 DIAPTVVPVNEPEATSSSKPPIITLEKALSFEIRN-----SHFDQPSPTSVLDASFEDAS 667
D + P + +A S P E+++ S D+ SPTS+LD FED++
Sbjct: 572 DNSTNHAPCSTKDAGSIEVPVSSDCVSGDVDEVKSNGDLKSIHDETSPTSILDTVFEDSN 631
Query: 668 EKSPNSSEHAIIAKQEPLSRSLPIGSIARTLSWDDSSQEATLCSAKGDSH---------E 718
P SS ++ L R I S+AR+ SW+D++ + L S+ E
Sbjct: 632 SNEPESSRRTSCTERVAL-RCPAIDSVARSFSWEDTNSGSPLLGGLKHSNVDDADYDDDE 690
Query: 719 QDQHEFVEKILSSVGFDNEKTSDIFVRWHSHDFPLGTGVLDQFLERKVEDAKCRERRSNQ 778
+ V++I+SS G + + S +F W+ + PL + D+FL+RK EDAK RERRS+Q
Sbjct: 691 LKCYSLVQEIVSSAGLCHLQLSMVFTGWYLPESPLDPALCDKFLDRKEEDAKSRERRSHQ 750
Query: 779 RLLIDSVNAALLDIGQSKLWGAYPCTDPQVNNARRVATGEVLVVDEVWRLVKGWLSDDDG 838
+L+ D VN AL++IGQ L +YP + + R E L +EVW +V WL D
Sbjct: 751 KLIFDCVNMALVEIGQDTLLCSYPWSRACLRTWRE-KLSETL-GEEVWNIVSDWLYGDGS 808
Query: 839 EKHMVNAEDNAGLVADWVVGKEIQGRSWPEALRLEVDEISTEICGEVLDELVGEAFSELV 898
N +DNAG++ + ++ +E++G+ W + L +E DEI+ +I EVL+++V ++ L
Sbjct: 809 --FAANKDDNAGIILERIMQEEVEGKGWIKLLTMETDEITEQIASEVLEDIVTDSVEHLS 866
Query: 899 GC 900
C
Sbjct: 867 IC 868
>Os02g0816400 Conserved hypothetical protein
Length = 934
Score = 287 bits (735), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 295/984 (29%), Positives = 438/984 (44%), Gaps = 166/984 (16%)
Query: 1 MINLIDLSAGASA-----RVATRDGSPVRE--------------TQSERKEYADLKXXXX 41
MIN+ DLS G A A RD SP + +Q E K+
Sbjct: 28 MINMFDLSNGVVATKMLTEKAHRDVSPAGKDRGNAFKMAIGPFSSQIEDKKRDSQPRKQS 87
Query: 42 XXXXXXXXXXXXXXXPMKVLIAQEMAKEGDTNQKTTSVVAKLMGLDDDAALPKPVQPSNN 101
P+K+L+ Q+M KEG + ++ +VVA+LMGL+D A
Sbjct: 88 PTKRLSSPTKRSGEAPVKLLMEQDMWKEGMSGEEPLNVVARLMGLNDAA----------- 136
Query: 102 RRRFPDGHLSAMLARVNNQMSFDNHTGFVENME----YKDV-----YEVGYQPPSCEHLS 152
GH S + + + + GF EN KD + G C S
Sbjct: 137 ------GHQSDLKSGKRSDKEY-RSGGFDENSRNLRPKKDSKGHPNQKAGTHSEPCSGFS 189
Query: 153 NE---FPQRRRPHEDHD---KKRMDLVRQKFVEAKHLASHENLLQSKEFHEALEVLNSNK 206
++ R H+ + +KRM LVR+KF EAK LA+ E LL +KEF EAL+ L+SNK
Sbjct: 190 DQTLRMNSSRNKHQGKEPSCEKRMTLVREKFAEAKRLATDEKLLHTKEFQEALQFLSSNK 249
Query: 207 DLFLKFLEEPNSLFAKQSGEFHSAPTSPQRKRITVLKPTRSVELKGEKEIKRQQDQTVNG 266
DLFLKFL+EPN L + + EF + K+IT+LKP+ S++ G + RQ +G
Sbjct: 250 DLFLKFLDEPNPLLSHNNYEFQPDTPPSETKQITILKPSDSIKRNGNTLVGRQ--LYSDG 307
Query: 267 SRVERSNTHRRSHSGGGHAKAERLPQHTRIVILKPSTALTSMEHFQKN------GHDNLD 320
E N RR S L + TRIV+LKP + ++ D+ D
Sbjct: 308 DESE-GNRCRRHQSLSVSPTNSTLSEPTRIVVLKPGLVKSQEPKILRSPSSSSTAADSED 366
Query: 321 YSEAPV-----ISRHLSDEINWSAQDMC--HQHDESFRGCMQSNMFIRDRVYYGYAEEEG 373
S + V SR L+ EI W + Q +E+ +++I D + E
Sbjct: 367 DSMSAVDETVPSSRRLAKEITWQMRMRLKDKQDEENLLSYEFHDIYIGDDSFSKSEVENA 426
Query: 374 SSFS-----DSEIGSPTSRHSWEYIYRFSNPYFGSTLSHASCSPDSLVTREAKKHTSDRW 428
S D E G+PTS SW+++ R +PY S S S + V REAKK +R
Sbjct: 427 KEVSGEISEDLEFGTPTSGRSWDFLSRSGSPYSASCSSQTSHRREPSVVREAKKRIFERL 486
Query: 429 PTVSSNEISQEKVLVRRSLSTLGEMLAMSDMKKKGAAEQVVT--NTSNQLCSNEPRLAVP 486
VSS +E+ RRS+ TLGEML + ++KK VT N S ++ S EP L +P
Sbjct: 487 SIVSSTVGGEEEREARRSMGTLGEMLTIPEVKKDQEVFGGVTLENPSPEMDSEEPFLCLP 546
Query: 487 SKCSVDGDGESSLRKISRSKSVPVSSAAFDSLRLDD---GCSNPEHEEPTSSKEEIKPKN 543
RS+SVP+ S +F L+ GC E E KN
Sbjct: 547 -----------------RSRSVPI-SLSFGGTELNGVATGCQEAEKE-----------KN 577
Query: 544 GKS-SLKGKISSFFLKRKKSGKDKLAPSPLGALGTRVPLASNASIVSSDVSQTEWTSLQD 602
KS S + K+SS F K +K + KL PS + + R+ ++A++ +D S+ S D
Sbjct: 578 RKSLSFREKVSSLFSKNRKVARGKLDPSGIPSTDDRLKHGNSATV--NDFSENADHSALD 635
Query: 603 DVASENLEKFD--IAPTVVP----VNEPE---ATSSSKPPIITLEKALSFEIRNSHFDQP 653
+ + ++ D P ++ +N+ E A S P+I I DQP
Sbjct: 636 NPLNCTIQNVDDISMPRLMASSWHMNDMENMPAKDISSIPVIGAPG-----IFGESQDQP 690
Query: 654 SPTSVLDASF-EDASEKSPNSSEHAIIAKQEPLSRSLPIGSIARTLSWDDSSQEA----- 707
SP SVLD F D S SSE I A + LSRS IGS +R+LSW+D E
Sbjct: 691 SPVSVLDGPFLSDNSRSLLCSSESFITASPQALSRSPLIGSFSRSLSWEDPPLEVMSPNS 750
Query: 708 ---TLCSAKGDSHEQDQHEFVEKILSSVGFDNEKTSDIFVRWHSHDFPLGTGVLDQFLER 764
+ +K D +QD F++K++ S G D E PL +L++F +
Sbjct: 751 LRLSRLFSKAD-EDQDSLTFIQKLVCSAGIDREGC--------MLSGPLELYLLEKFSDY 801
Query: 765 KVEDAKCRERRSNQRLLIDSVNAALLDIGQSKLWGAYP-----------CTDPQVNNARR 813
+ E K RERRS ++ L D+VN AL ++ + AYP C + N+A
Sbjct: 802 QEEGTKLRERRSKEKFLFDAVNEALTELTWTAELMAYPLGRSSSLERKDCENAFSNSA-- 859
Query: 814 VATGEVLVVDEVWRLVKGWLSDDDGEKHMVNAEDNAGLVADWVVGKEIQGRSWPEALRLE 873
DE+WR+++ W D K+ L+ + ++ +E+ + + RLE
Sbjct: 860 --------ADEIWRVIRNWSILD---KYPPGETIERNLLVEMILKREVLEAASSDTTRLE 908
Query: 874 VDEISTEICGEVLDELVGEAFSEL 897
E+++ +C VL++L+ +A +L
Sbjct: 909 TFELTSMVCTMVLEDLIADAVVDL 932
>Os03g0280700 Hypothetical protein
Length = 773
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 136/478 (28%), Positives = 215/478 (44%), Gaps = 84/478 (17%)
Query: 57 PMKVLIAQEMAKEGDTNQKTTSVVAKLMGLDDDAALPKPVQPSNNRRRFPDGHL---SAM 113
PMK LI +E +K+ + + VV +LMGLD P +NN+ R+ H S
Sbjct: 93 PMKTLIDEEFSKDVNARHTSPGVVGRLMGLDS-----LPSFGANNQHRYAQSHAEKSSPC 147
Query: 114 LARVNNQMS-FDNHTGFVENM-EYKDVYEVG-------YQPPSC--EHLSNEFPQRRRPH 162
A S + H + M E KDV+EV ++ P E++++ F + P
Sbjct: 148 CAHERRSFSEYIPHRRSTDEMPEVKDVFEVMEATRMKIHRSPRSKNENVTSTFGKTGSPD 207
Query: 163 EDHDKKRMDLVRQKFVEAKHLASHENLLQSKEFHEALEVLNSNKDLFLKFLEEPNSLFAK 222
+D +RQK ++AK L++ E+L S+E E L+VL SNKDL L+FL++ + + K
Sbjct: 208 -------LDQMRQKLMDAKRLSTDESLQISEELSETLDVLASNKDLLLQFLQKLDPI-VK 259
Query: 223 QSGEFHSAPTSPQRKRITVLKPTRSVEL----------KG-------EKEIKRQQDQTV- 264
+ H +P+S IT+LKP+R + KG +KE++ Q +
Sbjct: 260 RDLHDHDSPSSTANC-ITILKPSRRNQFTDTDNIYSQDKGAESYFYKQKEVEHSQSRPYT 318
Query: 265 ---NGSRVERSNTHRRSHSGGGHAK-AERLPQHTRIVILKPST----------AL---TS 307
N S E S + R+ S H + +++ TRIV+LKPS AL S
Sbjct: 319 KLPNQSPKEDSGSLRQKLSRSSHQEISDKRVCSTRIVVLKPSLDKAQDIEGAFALRNELS 378
Query: 308 MEHFQKNGHDNLDYSEAPVISRHLSD-EINWSAQDMCHQHDESFRGCMQS-----NMFIR 361
F+++ + D +P ++ + + D+ E RG M+ + R
Sbjct: 379 RFDFRRHKPCHGDAMWSPCTEEYIGPLRDSETFDDVAKGSKEIARGVMKQMRSARGVGTR 438
Query: 362 DRVYYGYAEEEGSSFSDSEIGSPTSRH----SWEYIYRFSNPYFG----STLSHASCSPD 413
++ + E S+F E P S S E +R S + G S S S S +
Sbjct: 439 KHIF----KPETSTFVSDERSQPLSSRSNVKSSEVFHRSSELHDGYASSSFTSSPSYSTE 494
Query: 414 SLVTREAKKHTSDRWPTVSSNEISQEKVLVRRSLSTLGEMLAMSDMKKKGAAEQVVTN 471
+ V+REAKKH S+RW + +K S LG+MLA+SD + A Q ++N
Sbjct: 495 TKVSREAKKHLSNRWKATHRYQHQADK---NNGFSMLGDMLALSDQEASKVATQKISN 549
>Os02g0617100 Conserved hypothetical protein
Length = 164
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 95/170 (55%), Gaps = 11/170 (6%)
Query: 729 LSSVGFDNEKTSDIFVRWHSHDFPLGTGVLDQFLERKVEDAKCRERRSNQRLLIDSVNAA 788
+SS G D+ ++S +F WH D PL + ++ LE RE+ S QRLL D VN A
Sbjct: 1 MSSAGLDDAQSSMLFTGWHLPDCPLDPILFNKVLE-------LREQSSYQRLLFDCVNVA 53
Query: 789 LLDIGQSKLWGAYPCTDPQVNNARRVATGEVLVVDEVWRLVKGWLSDDDGEKHMVNAEDN 848
L++IG++ L +P + ++ + + EVW ++K W+ +V+ DN
Sbjct: 54 LVEIGENTLLSTFPWSKAHSRTWMDASSPALGI--EVWSILKDWIYG--ARMFVVSRRDN 109
Query: 849 AGLVADWVVGKEIQGRSWPEALRLEVDEISTEICGEVLDELVGEAFSELV 898
AG++ + VV +E++G W + +R ++ +I+ +I G V +ELVGEA + V
Sbjct: 110 AGIMIERVVKQEVEGTGWVKTMRTQLVDITEQIEGGVWEELVGEAVLDFV 159
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.128 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 31,223,924
Number of extensions: 1354922
Number of successful extensions: 3327
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 3301
Number of HSP's successfully gapped: 6
Length of query: 901
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 791
Effective length of database: 11,292,261
Effective search space: 8932178451
Effective search space used: 8932178451
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 161 (66.6 bits)