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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0280700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.3 (0.0498) R2 : 0.157
β1 : 0.361 (0.181) R2dD : 0.00796 R2D : -0.00357
β2 : 0.649 (0.121) R2dC : 0.0541 R2C : 0.0507
β3 : 11.9 (1.95) R2dE : 0.727 R2E : -0.709
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 27.3 (4.26) R2dD*E : 0.79 R2D*E : -0.661
γ1 : 0.411 (0.104) R2dN8 : 0.0388 R2N8 : 0.0185
σ : 0.909
deviance : 380.59
__
_____
C
peak time of C : 14.9
E
wheather : temperature
threshold : 20.01
memory length : 90
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 13
open length of G : 6

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
379.31 0.915 3.31 0.353 0.647 11.9 0.639 27 0.409 15 20 90 13 6
411.23 0.952 3.24 0.215 0.669 -0.691 0.738 -- 0.396 15.4 20 90 13 6
380.59 0.909 3.3 0.361 0.649 11.9 -- 27.3 0.411 14.9 20.01 90 13 6
411.77 0.951 3.24 0.235 0.684 -0.795 -- -- 0.396 15.2 20.57 21 12.8 5.85
404.79 0.937 3.31 0.35 -- 12.3 -- 27.4 0.398 -- 19.98 85 13.1 5.95
412.54 0.952 3.24 0.251 0.653 -- 0.883 -- 0.405 15.4 -- -- -- --
414.8 0.954 3.24 0.267 0.654 -- -- -- 0.41 15.1 -- -- -- --
437.94 0.975 3.24 0.217 -- -0.529 -- -- 0.383 -- 20.9 44 12.5 5.97
413.22 0.952 3.25 -- 0.682 -0.846 -- -- 0.369 15.2 21.19 39 12.6 5.93
439.22 0.979 3.24 0.239 -- -- -- -- 0.393 -- -- -- -- --
416.67 0.955 3.24 -- 0.649 -- -- -- 0.38 15.1 -- -- -- --
439.14 0.976 3.25 -- -- -0.611 -- -- 0.361 -- 20.9 49 12 6.52
440.73 0.98 3.24 -- -- -- -- -- 0.366 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 379.33 temperature 20.0 90 < th dose independent rect. 13 6
3 379.44 wind 5.0 10 > th dose dependent rect. 20 1
5 379.46 temperature 20.0 90 < th dose dependent rect. 18 1
6 379.47 temperature 20.0 90 < th dose independent rect. 18 1
7 379.52 wind 7.0 10 > th dose independent rect. 19 10
12 379.53 wind 7.0 10 > th dose independent rect. 19 3
17 379.53 wind 7.0 10 > th dose dependent rect. 19 3
26 379.65 temperature 20.0 90 < th dose dependent rect. 12 7
27 379.66 wind 7.0 10 > th dose dependent rect. 19 10
37 379.81 wind 7.0 10 > th dose independent rect. 19 1
97 381.55 temperature 20.0 90 < th dose dependent rect. 9 11
160 387.70 humidity 80.0 90 < th dose independent rect. 2 2
161 387.71 humidity 80.0 90 < th dose dependent rect. 2 2
162 387.73 humidity 90.0 10 < th dose dependent rect. 3 1
165 388.00 wind 7.0 10 < th dose independent sin 12 NA
167 388.35 atmosphere 1005.0 30 > th dose dependent rect. 2 1
168 388.50 wind 1.0 30 < th dose independent rect. 2 1
169 388.53 atmosphere 1005.0 30 > th dose independent rect. 2 1
171 388.80 wind 3.0 30 < th dose dependent rect. 2 1
176 389.11 temperature 20.0 30 > th dose dependent rect. 2 1
187 389.49 temperature 20.0 30 > th dose independent rect. 2 1
188 389.56 humidity 80.0 30 > th dose independent rect. 2 1
193 389.68 temperature 10.0 30 > th dose independent rect. 2 1
195 389.68 temperature 30.0 30 < th dose independent rect. 2 1
196 389.68 humidity 50.0 30 > th dose independent rect. 2 1
200 389.68 atmosphere 1010.0 30 < th dose independent rect. 2 1
202 389.68 radiation 1.0 30 < th dose independent rect. 2 1
207 389.68 precipitation 0.1 30 < th dose independent rect. 2 1
208 389.68 temperature 10.0 30 > th dose independent rect. 3 23
209 389.68 radiation 1.0 30 < th dose dependent rect. 2 1
214 389.68 precipitation 0.1 30 < th dose dependent rect. 2 1
215 389.75 humidity 50.0 30 > th dose dependent rect. 2 1
223 389.93 humidity 90.0 10 < th dose independent rect. 3 1
229 390.26 wind 5.0 90 > th dose dependent rect. 18 1
236 391.10 temperature 30.0 30 < th dose dependent rect. 2 1
256 391.43 atmosphere 1015.0 30 < th dose dependent rect. 2 1
258 391.47 radiation 1.0 14400 < th dose dependent rect. 3 1
270 392.97 atmosphere 995.0 30 > th dose independent rect. 3 23
282 393.58 wind 1.0 30 > th dose independent rect. 2 1
287 394.21 temperature 20.0 30 < th dose independent sin 21 NA
288 394.24 temperature 20.0 30 > th dose independent sin 21 NA
317 394.71 wind 5.0 1440 < th dose independent rect. 12 2
342 394.78 wind 5.0 1440 > th dose independent rect. 12 2
345 394.91 wind 5.0 10 > th dose dependent rect. 14 7
348 395.00 wind 5.0 10 > th dose dependent rect. 12 9
382 395.57 wind 9.0 1440 < th dose independent rect. 3 1
383 395.57 temperature 10.0 1440 > th dose independent rect. 3 1
386 395.57 temperature 30.0 1440 < th dose independent rect. 3 1
390 395.57 humidity 50.0 1440 > th dose independent rect. 3 1
399 395.57 atmosphere 995.0 1440 > th dose independent rect. 3 1
400 395.57 radiation 1.0 1440 < th dose independent rect. 3 1
420 395.57 temperature 10.0 1440 > th dose independent rect. 4 23
436 395.80 temperature 20.0 30 > th dose independent rect. 17 8
439 395.84 atmosphere 1005.0 30 > th dose dependent rect. 19 2
442 395.90 atmosphere 1005.0 10 > th dose dependent rect. 13 8
445 395.93 wind 3.0 1440 > th dose dependent rect. 12 2
462 396.43 wind 9.0 1440 < th dose independent rect. 12 1
463 396.43 humidity 90.0 10 < th dose dependent rect. 20 1
476 396.80 wind 5.0 90 > th dose independent rect. 18 1
481 397.01 precipitation 0.1 30 < th dose independent rect. 3 23
482 397.01 precipitation 0.1 30 < th dose dependent rect. 3 23
484 397.08 humidity 80.0 270 < th dose independent rect. 23 17
490 397.25 wind 5.0 4320 > th dose dependent rect. 19 1
498 397.56 wind 3.0 10 > th dose dependent rect. 3 1
518 397.88 temperature 20.0 90 > th dose independent rect. 10 13
523 397.95 radiation 40.0 270 < th dose independent rect. 10 13
530 398.09 wind 7.0 1440 < th dose dependent rect. 2 18
531 398.09 wind 5.0 10 > th dose dependent rect. 12 22
534 398.11 wind 5.0 10 > th dose dependent rect. 12 18
555 398.29 wind 5.0 10 > th dose dependent rect. 14 16
558 398.31 wind 1.0 1440 > th dose dependent rect. 2 18
564 398.33 wind 5.0 10 > th dose dependent rect. 14 20
592 398.52 wind 1.0 1440 > th dose dependent rect. 2 16
593 398.53 temperature 20.0 720 > th dose independent rect. 11 8
612 398.60 temperature 20.0 720 < th dose independent rect. 19 1
617 398.62 wind 7.0 4320 < th dose independent rect. 19 1
618 398.62 wind 3.0 4320 > th dose dependent rect. 17 4
627 398.67 wind 3.0 4320 > th dose dependent rect. 6 16
646 398.75 wind 9.0 30 < th dose independent rect. 3 23
658 398.81 radiation 20.0 10 < th dose independent rect. 3 23
671 398.85 wind 5.0 10 > th dose independent rect. 15 6
673 398.86 temperature 20.0 720 < th dose independent rect. 11 9
683 398.88 temperature 20.0 30 > th dose independent rect. 17 22
688 398.89 wind 9.0 1440 < th dose dependent rect. 12 1
706 398.95 wind 3.0 4320 > th dose dependent rect. 6 22
708 398.96 wind 5.0 4320 < th dose independent rect. 6 16
714 398.98 wind 5.0 4320 > th dose independent rect. 7 15
760 399.09 wind 3.0 4320 > th dose dependent rect. 12 22
781 399.14 wind 7.0 1440 < th dose dependent sin 1 NA
797 399.19 wind 7.0 1440 < th dose dependent rect. 7 13
820 399.24 radiation 10.0 90 > th dose independent sin 19 NA
845 399.30 wind 5.0 10 > th dose dependent sin 14 NA
848 399.30 radiation 20.0 90 < th dose dependent rect. 7 16
873 399.35 wind 1.0 1440 > th dose dependent sin 1 NA
924 399.43 radiation 20.0 10 < th dose independent rect. 18 22
960 399.49 temperature 25.0 720 > th dose independent rect. 24 2
969 399.49 wind 3.0 4320 > th dose dependent rect. 15 23
970 399.50 radiation 10.0 90 < th dose independent rect. 7 16
1000 399.55 wind 3.0 4320 > th dose dependent no NA NA