BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0280700 Os03g0280700|J033022D09
(773 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G53540.1 | chr3:19846805-19850670 REVERSE LENGTH=925 109 4e-24
AT4G28760.1 | chr4:14208640-14211811 FORWARD LENGTH=925 93 4e-19
AT5G43880.1 | chr5:17639975-17642848 REVERSE LENGTH=837 72 2e-12
AT2G20240.1 | chr2:8727778-8730086 REVERSE LENGTH=714 52 9e-07
>AT3G53540.1 | chr3:19846805-19850670 REVERSE LENGTH=925
Length = 924
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 136/518 (26%), Positives = 228/518 (44%), Gaps = 53/518 (10%)
Query: 90 SGTPMKTLIDEEFSKDVNARHTSPGVVGRLMGLDSLPS-FGANNQHRYAQSHAEKSSPCC 148
+G PMK+L+ +E SK ++ SP ++ RLMGLD LPS ++ Q + ++ +S
Sbjct: 60 TGVPMKSLLAQEMSKQKESKKRSPSIIARLMGLDVLPSQSSSHKQQKSMENQQGRSGGGT 119
Query: 149 AHERRSFSEYIPHRRSTDEMPEVKDVFEVMEATRMKIHRSPRSK---NENVTSTFGKTGS 205
+++ +RS E + KDVFEV++A + +R+ + N N+T
Sbjct: 120 SYKSLG-------KRSKGEQ-KFKDVFEVLDAKMAESNRNLYHQGRVNANLTQA------ 165
Query: 206 PDLDQMRQKLMDAKRLSTDESLQISEELSETLDVLASNXXXXXXXXXXXXPIVKRDLHDH 265
++ +RQK M+AKRLSTD+ L+ S+E ++ L+ L SN + + LHD
Sbjct: 166 -EMAFIRQKFMEAKRLSTDDKLRHSKEFNDALEALDSNKDLLLKFLQHPDSLFTKHLHDL 224
Query: 266 DSPSSTANCITILKPSRRNQFTDTDNIYSQDKGAESYFYKQKEVEHSQSRPYTKLPNQSP 325
S T KP Q++ ++ S + K ++V+ R + P+++
Sbjct: 225 QS--------TPHKP----QYSQAPSLKSPNSQRHVDSLKTQKVDRDLLRKSHRSPHRNG 272
Query: 326 KEDSGSLRQKLSRSSHQEISD-------KR--VCSTRIVVLKPSLDKAQDIEGAFALRNE 376
SG + +R + + D KR + T+IVVLKP+L + + FA +
Sbjct: 273 GGGSGCPSRSHTRHASYDTIDLPNEELRKRSELQPTKIVVLKPNLGEPRYAARTFASPSS 332
Query: 377 LS-RFDFRRHKPCHGDAMWSPCTEEYIGPLRDSETFDDVAKGSKEIARGVMKQMRSARGV 435
S F R PC E+ ++S ++AK +M + R
Sbjct: 333 SSDEFRADRRLPCTTTHGRQKSNEDVRLSRQNSRDCGEMAK--------IMSRQRKVSCG 384
Query: 436 GTRKHIFKPETSTFVSDERSQPLSSRSNVKSSEVFHRSSELHDGYAXXXXXXXX-XXXXX 494
R F ETS F + S + SE+ +S +
Sbjct: 385 NGRAMSF--ETSGFRGYAGDESSSGSDSASESELVPVTSGTRTAFNRRNYHRSLPSKSTT 442
Query: 495 XKVSREAKKHLSNRWKATHRYQHQADKNNGFSMLGDMLALSDQEASKVATQKISNRKYPK 554
VSREAK+ LS RWK TH+++H+ + + L +MLA SD+EA + +S
Sbjct: 443 SSVSREAKRRLSERWKLTHKFEHEIEISRS-GTLAEMLATSDREARPASFNGLSFEDGIS 501
Query: 555 GESQKDRMTSTCNSPLGISSNDGWRDVATGSLPRSKSL 592
+ + P+GISS DGW+ + S +S+++
Sbjct: 502 KRFENNIQWPELPEPVGISSRDGWKGSCSRSFSKSRTI 539
>AT4G28760.1 | chr4:14208640-14211811 FORWARD LENGTH=925
Length = 924
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 149/546 (27%), Positives = 227/546 (41%), Gaps = 108/546 (19%)
Query: 83 RSKSKKASGTPMKTLIDEEFSKDVNARHTSPGVVGRLMGLDSLPSFGANNQHRYAQSHAE 142
RS S K SGTPMK LI E SK+V + + VV +LMGL++LP Q+H E
Sbjct: 80 RSASSKLSGTPMKKLIAREMSKEVEHKQSPTNVVAKLMGLETLP-----------QTHQE 128
Query: 143 KSSPCCAHERRSFSEYIPHRRSTDEMP--------EVKDVFEVMEATRMKIHR----SPR 190
++ S S STD E KDV+E ++ + K+ R SPR
Sbjct: 129 TATQRSKSRSNSHSSLNHSMTSTDNEVQKYQDFSREFKDVYETWQSPQ-KVSRSRDCSPR 187
Query: 191 SKNENVTSTFGKTGSPDLDQMRQKLMDAKRLSTDESLQISEELSETLDVLASNXXXXXXX 250
+ ++T + +RQK +AKRL TD+SL S+E + L+VL+SN
Sbjct: 188 KGRYDESTT-----EKQMALVRQKFSEAKRLVTDDSLHQSKEFQDALEVLSSNKDLFVQF 242
Query: 251 XXXXXPIVKRDLHD--HDSPSSTANCITILKPSRRNQFTDTDNIYSQDKGAESYFYKQKE 308
+++L D H P S A IT+L+PS+ + E Y
Sbjct: 243 LQESNSFSQQNLSDFHHVPPHSEAKRITVLRPSKAGE-------------TEKYV----- 284
Query: 309 VEHSQSRPYTKLPNQSPKEDSGSLRQKLSRSS---HQEISDKRVCSTRIVVLKPSLDKAQ 365
V+ +++ KL + S +++G + L S ++ + V TRIVVLKPSL K+
Sbjct: 285 VQGRRNKQVKKLASSS--QETGWGNRDLGYPSPYVNRGTEEHTVQPTRIVVLKPSLGKSL 342
Query: 366 DIEGAFALRNELSRFDFRRHKPCHGDAMWSPCTEEYIGPLRDSETFDDVAKGSKEIARGV 425
DI+ + ++ R Y D ET KE+A+ +
Sbjct: 343 DIKAVSSSQSSPRGLHSRG----------------YFDEPEDVET--------KEVAKEI 378
Query: 426 MKQMRSARGVGTRKHIFKPE--TSTFVSDERSQPLSSR----SNVKSSEVFHRSS----- 474
+Q+R R ++ ++ D+ S S N+ SE+ +S
Sbjct: 379 TRQVRENLMGHHRNETQSSSVLSNGYIGDDSSFNKSDNEDLVGNLSDSEIMSPASRHSWD 438
Query: 475 --ELHDGYAXXXXXXXXXXXXXXKVSREAKKHLSNRW---KATHRYQHQADKNNGFSMLG 529
D V REAKK LS RW + R Q + S LG
Sbjct: 439 CPNRFDSLFSPSSFSRASFSPESSVCREAKKRLSERWALMSVSGRTQPLKHVSRTSSTLG 498
Query: 530 DMLALSDQEASKVATQKISNRKYPKGESQKDRMTSTCNSPLGISSNDGWRDVATGS---L 586
+MLAL++ +KV T+ GE + + +T S I+S+ ++A+ S L
Sbjct: 499 EMLALTE---TKVTTE--------SGEGSYEIVPATRVSTSCITSDLSQVEMASDSLNIL 547
Query: 587 PRSKSL 592
RSKS+
Sbjct: 548 ARSKSV 553
>AT5G43880.1 | chr5:17639975-17642848 REVERSE LENGTH=837
Length = 836
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 95/200 (47%), Gaps = 40/200 (20%)
Query: 89 ASGTPMKTLIDEEFSKDVNARHTSPGVVGRLMGLDSLPSFGANNQHRYAQSHAEKSSPCC 148
+GTPMK L+++E SK++ + +S +V +LMGLDS P +S+P
Sbjct: 64 VNGTPMKMLLEQEMSKEMEVKLSSTNLVAKLMGLDSFPQ--------------TQSAP-- 107
Query: 149 AHERRSFSEYIPHRRSTDEMPEVKDVFEVMEATRMKIHRSPRSKNENVTSTFGKTG--SP 206
RS+S +RS E K+V+E+ + E S+ G G
Sbjct: 108 ----RSYSSKPRLKRSLSH-GEYKNVYEIWQ-------------KEGELSSNGVEGLSKK 149
Query: 207 DLDQMRQKLMDAKRLSTDESLQISEELSETLDVLASNXXXXXXXXXXXXPIVKRDLHDH- 265
+D +R+K ++AKRL TD+ L+ S+E E ++VL+SN LH
Sbjct: 150 KMDIVREKFLEAKRLVTDDELRHSKEFQEAMEVLSSNKELFLEFLQESNNFFSHHLHSFQ 209
Query: 266 --DSPSS-TANCITILKPSR 282
D P+S + ITILKPS+
Sbjct: 210 STDPPTSEKSKRITILKPSK 229
>AT2G20240.1 | chr2:8727778-8730086 REVERSE LENGTH=714
Length = 713
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 78/204 (38%), Gaps = 40/204 (19%)
Query: 84 SKSKKASGTPMKTLIDEEFSKD-VNARHTSPGVVGRLMGLDSLPSFGANNQHRYAQSHAE 142
SKSK+ S MK LI E SKD V R +S VV +LMGL++ +
Sbjct: 10 SKSKETSTESMKKLIAREMSKDVVEDRQSSNNVVAKLMGLETSAPRSRSKSSSRCSLTCV 69
Query: 143 KSSPCCAHERRSFSEYIPHRRSTDEMPEVKDVFEVMEATRMKIHRSPRSKNENVTSTFGK 202
S H HR + ++ ++ K
Sbjct: 70 GSKEAGKH-----------------------------------HREDETWDQKASNLSSK 94
Query: 203 TGSPD--LDQMRQKLMDAKRLSTDESLQISEELSETLDVLASNXXXXXXXXXXXXPIVKR 260
D +D +R+K M+AK L TD+ L S EL E L VL+SN + +
Sbjct: 95 ASMSDKQMDLVRRKFMEAKHLVTDDRLHRSSELQEALQVLSSNKDLFVKFLQESNSLFPQ 154
Query: 261 DLHDHD--SPSSTANCITILKPSR 282
L D P A IT+L+PS+
Sbjct: 155 HLSDFQPVPPHPDAKRITVLRPSK 178
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.127 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 15,860,292
Number of extensions: 678348
Number of successful extensions: 1558
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1550
Number of HSP's successfully gapped: 4
Length of query: 773
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 667
Effective length of database: 8,200,473
Effective search space: 5469715491
Effective search space used: 5469715491
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 116 (49.3 bits)