Os03g0143700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0143700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.41 | 0.299 | 10.4 | 1.73 | 0.376 | 0.528 | 0.535 | -1.49 | 0.5 | 8.72 | 86.01 | 3783 | -- | -- |
| 42.79 | 0.305 | 10.4 | 1.54 | 0.382 | 0.48 | 0.405 | -- | 0.466 | 8.52 | 87.44 | 3909 | -- | -- |
| 41.3 | 0.299 | 10.4 | 1.72 | 0.374 | 0.526 | -- | -1.28 | 0.493 | 8.75 | 86.23 | 3811 | -- | -- |
| 43.04 | 0.306 | 10.4 | 1.58 | 0.364 | 0.494 | -- | -- | 0.458 | 8.69 | 85.84 | 3840 | -- | -- |
| 48.66 | 0.325 | 10.4 | 1.69 | -- | 0.687 | -- | -1.26 | 0.547 | -- | 86.22 | 3640 | -- | -- |
| 45.67 | 0.317 | 10.4 | 1.62 | 0.415 | -- | 0.378 | -- | 0.281 | 8.76 | -- | -- | -- | -- |
| 46.14 | 0.318 | 10.4 | 1.64 | 0.413 | -- | -- | -- | 0.281 | 8.82 | -- | -- | -- | -- |
| 50.4 | 0.331 | 10.4 | 1.54 | -- | 0.639 | -- | -- | 0.503 | -- | 86 | 3688 | -- | -- |
| 104.04 | 0.475 | 10.4 | -- | 0.371 | 0.969 | -- | -- | 0.46 | 8.23 | 86 | 3962 | -- | -- |
| 55.87 | 0.349 | 10.4 | 1.64 | -- | -- | -- | -- | 0.284 | -- | -- | -- | -- | -- |
| 116.77 | 0.505 | 10.4 | -- | 0.418 | -- | -- | -- | 0.0988 | 8.52 | -- | -- | -- | -- |
| 109.99 | 0.488 | 10.4 | -- | -- | 1.09 | -- | -- | 0.494 | -- | 86.06 | 3705 | -- | -- |
| 126.58 | 0.525 | 10.5 | -- | -- | -- | -- | -- | 0.103 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.95 | wind | 9 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 3 | 40.05 | wind | 9 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 5 | 40.10 | wind | 9 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 23 | 40.58 | humidity | 90 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 39 | 40.81 | humidity | 80 | 4320 | < th | dose independent | rect. | 17 | 6 |
| 41 | 40.83 | humidity | 80 | 4320 | < th | dose independent | rect. | 18 | 2 |
| 47 | 40.93 | humidity | 80 | 4320 | > th | dose independent | rect. | 17 | 7 |
| 51 | 40.96 | humidity | 90 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 55 | 40.99 | humidity | 80 | 4320 | > th | dose independent | rect. | 18 | 2 |
| 63 | 41.02 | humidity | 90 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 64 | 41.02 | wind | 9 | 4320 | < th | dose independent | rect. | 16 | 11 |
| 65 | 41.03 | wind | 9 | 4320 | < th | dose independent | rect. | 16 | 9 |
| 71 | 41.06 | humidity | 80 | 4320 | > th | dose dependent | rect. | 18 | 13 |
| 80 | 41.10 | humidity | 80 | 4320 | > th | dose dependent | rect. | 18 | 16 |
| 88 | 41.12 | humidity | 90 | 4320 | > th | dose dependent | rect. | 4 | 6 |
| 89 | 41.12 | humidity | 80 | 4320 | > th | dose dependent | rect. | 18 | 10 |
| 142 | 41.24 | humidity | 90 | 4320 | < th | dose independent | rect. | 6 | 4 |
| 143 | 41.24 | humidity | 90 | 4320 | > th | dose dependent | sin | 4 | NA |
| 145 | 41.25 | humidity | 80 | 4320 | > th | dose dependent | sin | 11 | NA |
| 167 | 41.30 | humidity | 70 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 195 | 41.34 | humidity | 90 | 4320 | > th | dose dependent | rect. | 1 | 21 |
| 199 | 41.34 | humidity | 90 | 4320 | > th | dose dependent | rect. | 12 | 22 |
| 204 | 41.35 | wind | 7 | 4320 | > th | dose dependent | rect. | 13 | 8 |
| 209 | 41.35 | humidity | 90 | 4320 | > th | dose dependent | rect. | 24 | 16 |
| 218 | 41.36 | humidity | 90 | 4320 | > th | dose independent | rect. | 6 | 4 |
| 296 | 41.40 | humidity | 90 | 4320 | > th | dose dependent | no | NA | NA |
| 297 | 41.40 | humidity | 80 | 4320 | > th | dose dependent | rect. | 18 | 3 |
| 319 | 41.40 | humidity | 90 | 4320 | > th | dose dependent | rect. | 8 | 23 |
| 326 | 41.41 | humidity | 90 | 4320 | > th | dose independent | rect. | 18 | 16 |
| 338 | 41.42 | wind | 7 | 4320 | > th | dose independent | rect. | 13 | 4 |
| 383 | 41.44 | wind | 7 | 4320 | > th | dose dependent | rect. | 13 | 6 |
| 417 | 41.47 | wind | 7 | 4320 | < th | dose independent | rect. | 13 | 4 |
| 440 | 41.48 | humidity | 90 | 4320 | > th | dose independent | rect. | 20 | 14 |
| 451 | 41.49 | humidity | 90 | 4320 | > th | dose independent | sin | 7 | NA |
| 475 | 41.50 | wind | 7 | 4320 | < th | dose independent | rect. | 13 | 8 |
| 507 | 41.52 | wind | 7 | 4320 | > th | dose independent | rect. | 13 | 8 |
| 657 | 41.62 | wind | 7 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 707 | 41.65 | wind | 5 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 763 | 41.68 | wind | 7 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 764 | 41.68 | wind | 5 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 774 | 41.68 | wind | 7 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 857 | 41.72 | humidity | 90 | 4320 | > th | dose independent | rect. | 1 | 22 |
| 860 | 41.72 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 909 | 41.74 | humidity | 90 | 4320 | > th | dose independent | rect. | 5 | 23 |
| 926 | 41.75 | humidity | 90 | 4320 | > th | dose independent | no | NA | NA |
| 927 | 41.75 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 953 | 41.76 | wind | 5 | 4320 | > th | dose independent | rect. | 17 | 4 |
| 979 | 41.77 | wind | 7 | 4320 | < th | dose independent | rect. | 13 | 13 |
| 987 | 41.77 | humidity | 50 | 4320 | > th | dose dependent | rect. | 20 | 5 |