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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0816400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.53 (0.0339) R2 : 0.261
β1 : -1.35 (0.124) R2dD : 0.197 R2D : 0.164
β2 : 0.582 (0.0852) R2dC : 0.0757 R2C : 0.0628
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.238 (0.0725) R2dN8 : 0.0234 R2N8 : -0.00659
σ : 0.638
deviance : 185.72
__
_____
C
peak time of C : 3.43
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
171.56 0.615 4.56 -1.25 0.598 -0.521 1.05 -1.41 -0.308 2.61 70.46 4148 -- --
174.41 0.615 4.57 -1.24 0.632 -0.674 0.982 -- -0.378 2.58 68.9 4029 -- --
174.26 0.615 4.55 -1.25 0.592 -0.432 -- -1.89 -0.276 3.32 70.22 4560 -- --
177.21 0.62 4.57 -1.28 0.62 -0.651 -- -- -0.382 3.15 68.57 4046 -- --
192.29 0.646 4.54 -1.32 -- -0.619 -- -1.57 -0.232 -- 75.68 4711 -- --
183.65 0.635 4.53 -1.33 0.563 -- 0.861 -- -0.232 2.83 -- -- -- --
185.72 0.638 4.53 -1.35 0.582 -- -- -- -0.238 3.43 -- -- -- --
195.83 0.652 4.53 -1.31 -- -0.746 -- -- -0.226 -- 76 4749 -- --
202.96 0.664 4.51 -- 0.528 -1.27 -- -- -0.218 3.08 52.33 4354 -- --
204.71 0.669 4.53 -1.32 -- -- -- -- -0.222 -- -- -- -- --
233.47 0.715 4.5 -- 0.555 -- -- -- -0.088 3.43 -- -- -- --
222.06 0.694 4.53 -- -- -1.28 -- -- -0.213 -- 52 4377 -- --
250.77 0.739 4.5 -- -- -- -- -- -0.0759 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 163.90 temperature 20.0 10 > th dose independent rect. 20 19
3 165.38 atmosphere 1010.0 30 < th dose independent rect. 20 19
9 167.06 temperature 10.0 270 > th dose dependent rect. 18 9
13 167.18 temperature 10.0 30 > th dose dependent rect. 20 19
15 167.40 atmosphere 1010.0 270 < th dose independent rect. 18 19
26 168.05 humidity 70.0 1440 > th dose dependent rect. 8 3
29 168.10 humidity 70.0 1440 > th dose independent rect. 20 15
30 168.12 humidity 70.0 1440 > th dose independent rect. 22 13
32 168.15 humidity 70.0 1440 > th dose independent rect. 5 6
33 168.15 humidity 70.0 1440 > th dose independent rect. 24 11
41 168.22 temperature 10.0 270 > th dose dependent rect. 18 19
42 168.25 radiation 20.0 4320 < th dose independent rect. 21 9
53 168.42 humidity 70.0 1440 > th dose dependent rect. 8 1
56 168.56 temperature 15.0 270 > th dose independent rect. 17 21
57 168.57 atmosphere 1015.0 10 < th dose dependent rect. 15 5
79 168.78 humidity 70.0 1440 < th dose independent rect. 9 2
80 168.78 atmosphere 1010.0 270 < th dose independent rect. 9 3
88 168.88 humidity 70.0 1440 < th dose independent rect. 6 5
101 168.90 precipitation 0.1 270 < th dose independent rect. 3 14
102 168.90 precipitation 0.1 270 < th dose dependent rect. 3 14
103 168.91 wind 7.0 10 < th dose independent rect. 20 19
104 168.91 humidity 90.0 1440 < th dose dependent rect. 6 5
146 169.30 radiation 10.0 270 < th dose independent rect. 17 11
184 169.46 wind 7.0 30 < th dose independent rect. 15 5
188 169.48 temperature 10.0 10 > th dose dependent rect. 20 10
191 169.49 atmosphere 1015.0 270 < th dose dependent rect. 14 3
195 169.51 atmosphere 1015.0 270 < th dose dependent rect. 15 1
204 169.55 temperature 15.0 270 > th dose independent rect. 17 10
241 169.63 atmosphere 1010.0 270 < th dose independent rect. 11 1
246 169.70 radiation 20.0 270 < th dose dependent rect. 17 11
276 169.92 atmosphere 1010.0 30 < th dose independent rect. 11 4
302 169.96 temperature 10.0 270 > th dose independent rect. 3 14
303 169.96 atmosphere 1015.0 270 < th dose independent rect. 3 14
307 169.97 atmosphere 995.0 270 > th dose independent rect. 17 10
309 169.98 radiation 1.0 90 < th dose independent sin 12 NA
311 169.98 precipitation 0.1 270 < th dose independent rect. 17 10
312 169.98 radiation 1.0 90 < th dose independent rect. 19 19
314 169.98 precipitation 0.1 270 < th dose dependent rect. 17 10
317 170.00 precipitation 0.1 4320 < th dose independent rect. 6 3
318 170.00 wind 9.0 270 < th dose independent rect. 3 14
321 170.00 precipitation 0.1 4320 < th dose dependent rect. 6 3
329 170.03 temperature 20.0 270 > th dose independent rect. 8 14
331 170.03 humidity 70.0 4320 < th dose dependent rect. 10 2
333 170.05 temperature 20.0 270 > th dose independent rect. 8 5
356 170.09 humidity 50.0 270 > th dose independent rect. 17 10
389 170.17 wind 9.0 270 < th dose independent rect. 17 10
406 170.24 radiation 1.0 270 > th dose independent rect. 12 21
419 170.28 wind 1.0 4320 < th dose dependent rect. 6 2
420 170.29 radiation 1.0 90 < th dose independent rect. 19 15
425 170.30 radiation 1.0 90 < th dose independent rect. 19 13
436 170.32 temperature 10.0 10 > th dose independent rect. 15 5
438 170.32 atmosphere 1010.0 10 < th dose independent rect. 15 5
443 170.32 atmosphere 995.0 10 > th dose independent rect. 20 19
445 170.33 temperature 20.0 270 > th dose independent rect. 9 3
454 170.35 temperature 10.0 1440 > th dose independent rect. 16 5
457 170.35 temperature 10.0 1440 > th dose independent rect. 21 19
461 170.36 wind 1.0 10 > th dose independent rect. 15 5
462 170.37 radiation 40.0 10 < th dose independent rect. 15 5
467 170.39 humidity 70.0 4320 < th dose independent sin 8 NA
470 170.40 radiation 1.0 90 < th dose dependent rect. 19 19
480 170.45 radiation 10.0 90 < th dose dependent sin 12 NA
513 170.49 precipitation 0.1 30 < th dose independent rect. 15 5
514 170.49 radiation 40.0 10 < th dose independent rect. 6 14
518 170.49 precipitation 0.1 30 < th dose dependent rect. 15 5
527 170.52 atmosphere 1015.0 270 < th dose independent rect. 18 9
531 170.53 temperature 15.0 1440 > th dose independent rect. 7 14
534 170.54 humidity 70.0 4320 > th dose independent sin 8 NA
581 170.69 humidity 90.0 270 < th dose independent rect. 8 5
589 170.70 humidity 90.0 270 < th dose independent rect. 9 3
595 170.70 radiation 1.0 90 < th dose dependent rect. 19 15
604 170.71 radiation 10.0 30 < th dose dependent rect. 20 12
615 170.73 wind 7.0 270 < th dose independent rect. 15 1
620 170.74 temperature 20.0 10 > th dose independent rect. 20 10
654 170.79 humidity 70.0 4320 < th dose dependent sin 7 NA
656 170.79 atmosphere 1015.0 270 < th dose dependent rect. 9 3
659 170.79 atmosphere 1015.0 30 < th dose dependent rect. 20 19
685 170.86 wind 1.0 270 > th dose independent rect. 13 5
704 170.87 precipitation 0.1 1440 < th dose independent rect. 5 7
709 170.87 precipitation 0.1 1440 < th dose dependent rect. 5 7
741 170.93 precipitation 0.1 4320 < th dose independent rect. 4 3
742 170.93 atmosphere 995.0 4320 > th dose independent rect. 9 6
749 170.93 precipitation 0.1 4320 < th dose dependent rect. 4 3
765 170.94 precipitation 0.1 30 < th dose independent rect. 20 19
769 170.94 precipitation 0.1 30 < th dose dependent rect. 20 19
783 170.96 wind 7.0 270 < th dose independent rect. 14 3
785 170.96 precipitation 0.1 270 < th dose independent rect. 22 11
791 170.96 precipitation 0.1 270 < th dose dependent rect. 22 11
800 170.97 precipitation 0.1 4320 > th dose independent rect. 6 3
803 170.97 precipitation 0.1 4320 > th dose dependent rect. 6 3
806 170.98 wind 9.0 270 < th dose dependent rect. 9 3
809 170.99 atmosphere 1010.0 10 < th dose independent rect. 20 10
818 170.99 wind 9.0 30 < th dose dependent rect. 20 19
820 171.00 radiation 20.0 10 < th dose dependent rect. 20 10
833 171.04 precipitation 0.1 4320 > th dose independent rect. 4 3
845 171.06 wind 5.0 270 < th dose independent rect. 9 3
893 171.12 wind 9.0 270 < th dose dependent rect. 8 5
904 171.14 humidity 50.0 30 > th dose independent rect. 20 19
913 171.16 wind 9.0 270 < th dose independent rect. 13 5
915 171.17 temperature 20.0 10 > th dose independent rect. 11 4
918 171.17 radiation 1.0 270 > th dose independent rect. 13 18
921 171.17 temperature 10.0 30 > th dose dependent rect. 15 5
948 171.19 wind 1.0 270 > th dose independent rect. 13 18
981 171.23 temperature 30.0 270 < th dose independent rect. 18 10
983 171.23 precipitation 0.1 4320 > th dose dependent rect. 4 3