BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0133900 Os03g0133900|AK067089
(354 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0133900 Similar to Serine acetyltransferase (EC 2.3.1.... 564 e-161
Os01g0720700 Similar to Serine acetyltransferase 238 4e-63
AK071186 238 4e-63
Os05g0533500 Similar to Serine acetyltransferase 230 1e-60
Os03g0196600 Similar to Chloroplast serine acetyltransferase 192 2e-49
Os03g0185000 Similar to Chloroplast serine acetyltransferase 165 6e-41
>Os03g0133900 Similar to Serine acetyltransferase (EC 2.3.1.30) (Sat-106)
Length = 354
Score = 564 bits (1454), Expect = e-161, Method: Compositional matrix adjust.
Identities = 284/354 (80%), Positives = 284/354 (80%)
Query: 1 MTSCGCLVLEKVEDHXXXXXXXXXXXXXXXXXXXXXXXXXXXXEWRSRSETMFPIYVMGX 60
MTSCGCLVLEKVEDH EWRSRSETMFPIYVMG
Sbjct: 1 MTSCGCLVLEKVEDHGGEAAGRGRGRLAQGGGGGGGGCGSCAGEWRSRSETMFPIYVMGS 60
Query: 61 XXXXXXXXXXGIVDAAGDPIWXXXXXXXXXXXXXXPILSSFLYASVLSHDCLERALSFVL 120
GIVDAAGDPIW PILSSFLYASVLSHDCLERALSFVL
Sbjct: 61 SRASSAAAARGIVDAAGDPIWEAVKSEAKSEAEKEPILSSFLYASVLSHDCLERALSFVL 120
Query: 121 ANRLEDPTLLATQLIDIFNDVMMNNKDIRRSIRLDAQAFKDRDPACAQYSWALLYLKGYH 180
ANRLEDPTLLATQLIDIFNDVMMNNKDIRRSIRLDAQAFKDRDPACAQYSWALLYLKGYH
Sbjct: 121 ANRLEDPTLLATQLIDIFNDVMMNNKDIRRSIRLDAQAFKDRDPACAQYSWALLYLKGYH 180
Query: 181 SVQSYRIAHVLWNQGRKVLALALQSRISEVFAVDIHPAARIGEGILLDHGTGLVIGETAI 240
SVQSYRIAHVLWNQGRKVLALALQSRISEVFAVDIHPAARIGEGILLDHGTGLVIGETAI
Sbjct: 181 SVQSYRIAHVLWNQGRKVLALALQSRISEVFAVDIHPAARIGEGILLDHGTGLVIGETAI 240
Query: 241 VGNWVSLMQGVTLGGTGKENGDRHPKXXXXXXXXXXXXXXXXXNVGEGAMIAAGSLVLKD 300
VGNWVSLMQGVTLGGTGKENGDRHPK NVGEGAMIAAGSLVLKD
Sbjct: 241 VGNWVSLMQGVTLGGTGKENGDRHPKIGQGALLGAGATILGNINVGEGAMIAAGSLVLKD 300
Query: 301 VPPHSMAVGNPAKVVGYKDKEDPSLTMKHDARRDYFEHVAVSFSDDKANGSVVK 354
VPPHSMAVGNPAKVVGYKDKEDPSLTMKHDARRDYFEHVAVSFSDDKANGSVVK
Sbjct: 301 VPPHSMAVGNPAKVVGYKDKEDPSLTMKHDARRDYFEHVAVSFSDDKANGSVVK 354
>Os01g0720700 Similar to Serine acetyltransferase
Length = 303
Score = 238 bits (608), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 126/251 (50%), Positives = 165/251 (65%), Gaps = 1/251 (0%)
Query: 80 IWXXXXXXXXXXXXXXPILSSFLYASVLSHDCLERALSFVLANRLEDPTLLATQLIDIFN 139
+W P L+SFLYA+VLSH L+R+L+F LAN+L TLL+T L D+F
Sbjct: 41 VWSQIKAEARRDADAEPALASFLYATVLSHPSLDRSLAFHLANKLCSSTLLSTLLYDLFV 100
Query: 140 DVMMNNKDIRRSIRLDAQAFKDRDPACAQYSWALLYLKGYHSVQSYRIAHVLWNQGRKVL 199
+ + +R ++ D A + RDPAC +S LL KG+ ++Q+ R+AHVLW Q R+ L
Sbjct: 101 ASLAAHPTLRAAVVADLLAARSRDPACVGFSHCLLNYKGFLAIQAQRVAHVLWAQDRRAL 160
Query: 200 ALALQSRISEVFAVDIHPAARIGEGILLDHGTGLVIGETAIVGNWVSLMQGVTLGGTGKE 259
ALALQSR++EVFAVDIHPAA IG+G+LLDH TG+VIGETA++G+ VS++ VTLGGTGK
Sbjct: 161 ALALQSRVAEVFAVDIHPAAAIGKGVLLDHATGVVIGETAVIGDNVSILHHVTLGGTGKA 220
Query: 260 NGDRHPKXXXXXXXXXXXXXXXXXNVGEGAMIAAGSLVLKDVPPHSMAVGNPAKVVGYKD 319
GDRHPK +G GA I AGSLVL DVPP + AVGNPA+++G K
Sbjct: 221 VGDRHPKIGDGVLIGAGATILGNVRIGAGAKIGAGSLVLIDVPPRTTAVGNPARLLGGKK 280
Query: 320 KED-PSLTMKH 329
+D P +M H
Sbjct: 281 GDDMPGESMDH 291
>AK071186
Length = 303
Score = 238 bits (608), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 126/251 (50%), Positives = 165/251 (65%), Gaps = 1/251 (0%)
Query: 80 IWXXXXXXXXXXXXXXPILSSFLYASVLSHDCLERALSFVLANRLEDPTLLATQLIDIFN 139
+W P L+SFLYA+VLSH L+R+L+F LAN+L TLL+T L D+F
Sbjct: 41 VWSQIKAEARRDADAEPALASFLYATVLSHPSLDRSLAFHLANKLCSSTLLSTLLYDLFV 100
Query: 140 DVMMNNKDIRRSIRLDAQAFKDRDPACAQYSWALLYLKGYHSVQSYRIAHVLWNQGRKVL 199
+ + +R ++ D A + RDPAC +S LL KG+ ++Q+ R+AHVLW Q R+ L
Sbjct: 101 ASLAAHPTLRAAVVADLLAARSRDPACVGFSHCLLNYKGFLAIQAQRVAHVLWAQDRRAL 160
Query: 200 ALALQSRISEVFAVDIHPAARIGEGILLDHGTGLVIGETAIVGNWVSLMQGVTLGGTGKE 259
ALALQSR++EVFAVDIHPAA IG+G+LLDH TG+VIGETA++G+ VS++ VTLGGTGK
Sbjct: 161 ALALQSRVAEVFAVDIHPAAAIGKGVLLDHATGVVIGETAVIGDNVSILHHVTLGGTGKA 220
Query: 260 NGDRHPKXXXXXXXXXXXXXXXXXNVGEGAMIAAGSLVLKDVPPHSMAVGNPAKVVGYKD 319
GDRHPK +G GA I AGSLVL DVPP + AVGNPA+++G K
Sbjct: 221 VGDRHPKIGDGVLIGAGATILGNVRIGAGAKIGAGSLVLIDVPPRTTAVGNPARLLGGKK 280
Query: 320 KED-PSLTMKH 329
+D P +M H
Sbjct: 281 GDDMPGESMDH 291
>Os05g0533500 Similar to Serine acetyltransferase
Length = 314
Score = 230 bits (587), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 123/256 (48%), Positives = 164/256 (64%), Gaps = 6/256 (2%)
Query: 80 IWXXXXXXXXXXXXXXPILSSFLYASVLSHDCLERALSFVLANRLEDPTLLATQLIDIFN 139
+W P L+SFLYA+VLSH L R++SF LAN+L TLL+T L D+F
Sbjct: 47 VWSQIKAEARRDADAEPALASFLYATVLSHPSLPRSISFHLANKLCSSTLLSTLLYDLFL 106
Query: 140 DVMMNNKDIRRSIRLDAQAFKDRDPACAQYSWALLYLKGYHSVQSYRIAHVLWNQGRKVL 199
+ +R ++ D A + RDPAC +S LL KG+ ++Q++R++HVLW Q R+ L
Sbjct: 107 ASFTAHPSLRAAVVADLLAARSRDPACVGFSQCLLNFKGFLAIQAHRVSHVLWAQQRRPL 166
Query: 200 ALALQSRISEVFAVDIHPAARIGEGILLDHGTGLVIGETAIVGNWVSLMQGVTLGGTGKE 259
ALALQSR+++VFAVDIHPAA +G+GILLDH TG+VIGETA+VG+ VS++ VTLGGTGK
Sbjct: 167 ALALQSRVADVFAVDIHPAAVVGKGILLDHATGVVIGETAVVGDNVSILHHVTLGGTGKA 226
Query: 260 NGDRHPKXXXXXXXXXXXXXXXXXNVGEGAMIAAGSLVLKDVPPHSMAVGNPAKVVGY-- 317
GDRHPK +G GA I AGS+VL DVP + AVGNPA+++G
Sbjct: 227 VGDRHPKIGDGVLIGAGATILGNVKIGAGAKIGAGSVVLIDVPARNTAVGNPARLIGRKN 286
Query: 318 ----KDKEDPSLTMKH 329
KD++ P +M H
Sbjct: 287 GEVEKDEDMPGESMDH 302
>Os03g0196600 Similar to Chloroplast serine acetyltransferase
Length = 315
Score = 192 bits (489), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 118/260 (45%), Positives = 155/260 (59%), Gaps = 8/260 (3%)
Query: 78 DPIWXXXXXXXXXXXXXXPILSSFLYASVLSHDCLERALSFVLANRLEDPTLLAT-QLID 136
D +W P+L F + VLS LE AL+ +LA +L P L QL D
Sbjct: 52 DYVWDVLRAEAQDDADDEPLLRKFYHDLVLSRPSLESALASLLAAKLCIPGALPQDQLRD 111
Query: 137 IFNDVMMNNKDIRRSIRLDAQAFKDRDPACAQYSWALLYLKGYHSVQSYRIAHVLWNQGR 196
+ + + + R+ R D A +DRDPACA+ LY KG+ ++Q++R AH LW+ R
Sbjct: 112 LLAGALAAHPEAGRAARADLVAARDRDPACAKMVHCFLYYKGFLALQAHRAAHALWSDNR 171
Query: 197 KVLALALQSRISEVFAVDIHPAARIGEGILLDHGTGLVIGETAIVGNWVSLMQGVTLGGT 256
+ AL LQSR SEVF VDIHP ARIG GILLDH TG+VIGETA+VG VS++ GVTLGGT
Sbjct: 172 RAPALLLQSRASEVFGVDIHPGARIGCGILLDHATGVVIGETAVVGYDVSILHGVTLGGT 231
Query: 257 GKENGDRHPKXXXXXXXXXXXXXXXXXNVGEGAMIAAGSLVLKDVPPHSMAVGNPAK-VV 315
GKE+GDRHPK ++G+GA I AG++VL+DV + AVGNPAK ++
Sbjct: 232 GKESGDRHPKVGDGVLIGAGASVLGNVHIGDGAKIGAGAVVLRDVADGTTAVGNPAKPII 291
Query: 316 GYK------DKEDPSLTMKH 329
G K +E P +TM+
Sbjct: 292 GKKAAPQRRPEELPGVTMEQ 311
>Os03g0185000 Similar to Chloroplast serine acetyltransferase
Length = 301
Score = 165 bits (417), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 114/260 (43%), Positives = 153/260 (58%), Gaps = 10/260 (3%)
Query: 75 AAGDPIWXXXXXXXXXXXXXXPILSSFLYASVLSHDCLERALSFVLANRLEDPTLLAT-Q 133
++GD +W P+L F + VLS LE AL+ +LA +L P L Q
Sbjct: 43 SSGDYVWDALRAEAQDDADDEPLLRKFYHDLVLSRPSLESALASLLAAKLCIPGALPQDQ 102
Query: 134 LIDIFNDVMMNNKDIRRSIRLDAQAFKDRDPACAQYSWALLYLKGYHSVQSYRIAHVLWN 193
L D+ + + + R+ R D A +DRDPACA+ LY +G+ ++Q++R AH LW+
Sbjct: 103 LRDLLAGALAAHPEAGRAARADLAAARDRDPACAKMVHCFLYYRGFLALQAHRAAHALWS 162
Query: 194 QGRKVLALALQSRISEVFAVDIHPAARIGEGILLDHGTGLVIGETAIVGNWVSLMQGVTL 253
R+ AL LQSR SEVF VDIHP ARIG GILLDH TG+VIGETA+VG VS++ VTL
Sbjct: 163 DNRRAPALLLQSRASEVFGVDIHPGARIGGGILLDHATGVVIGETAVVGYGVSILHAVTL 222
Query: 254 GGTGKENGDRHPKXXXXXXXXXXXXXXXXXNVGEGAMIAAGSLVLKDVPPHSMAVGNPAK 313
GGTGKE+GDRHPK ++G+GA I AG++VL+DV A G AK
Sbjct: 223 GGTGKESGDRHPKVGDGVLIGAGASVLGNVHIGDGAEIGAGAIVLRDV-----ADGTTAK 277
Query: 314 -VVGYK---DKEDPSLTMKH 329
++G K +E P +TM+
Sbjct: 278 PIIGKKAEPQRELPGVTMEQ 297
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.136 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,698,040
Number of extensions: 347044
Number of successful extensions: 566
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 551
Number of HSP's successfully gapped: 6
Length of query: 354
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 252
Effective length of database: 11,709,973
Effective search space: 2950913196
Effective search space used: 2950913196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)