Os03g0196600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Chloroplast serine acetyltransferase.
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Os03g0196600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Chloroplast serine acetyltransferase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 299.29 | 0.813 | 10.2 | -2.23 | 2.29 | -2.59 | 1.51 | 0.335 | 0.125 | 10.4 | 14.41 | 1894 | -- | -- |
| 299.38 | 0.806 | 10.2 | -2.3 | 2.29 | -2.6 | 1.5 | -- | 0.107 | 10.4 | 14.3 | 1895 | -- | -- |
| 308.58 | 0.818 | 10.2 | -2.2 | 2.29 | -2.59 | -- | 0.238 | 0.126 | 10.4 | 14.4 | 1890 | -- | -- |
| 308.57 | 0.818 | 10.2 | -2.24 | 2.28 | -2.61 | -- | -- | 0.112 | 10.4 | 14.23 | 1895 | -- | -- |
| 490.41 | 1.03 | 10.2 | -1.84 | -- | -3.52 | -- | 1.23 | 0.34 | -- | 19.38 | 807 | -- | -- |
| 412.93 | 0.953 | 10.3 | -3.17 | 2.46 | -- | 1.63 | -- | -0.383 | 10.2 | -- | -- | -- | -- |
| 423.52 | 0.964 | 10.3 | -3.1 | 2.45 | -- | -- | -- | -0.379 | 10.2 | -- | -- | -- | -- |
| 490.68 | 1.03 | 10.2 | -2.1 | -- | -3.55 | -- | -- | 0.278 | -- | 18.75 | 805 | -- | -- |
| 372.29 | 0.899 | 10.1 | -- | 2.37 | -2.96 | -- | -- | 0.78 | 10.2 | 8.063 | 24270 | -- | -- |
| 788.29 | 1.31 | 10.4 | -3.14 | -- | -- | -- | -- | -0.384 | -- | -- | -- | -- | -- |
| 677.6 | 1.22 | 10.3 | -- | 2.47 | -- | -- | -- | -0.0333 | 10.3 | -- | -- | -- | -- |
| 588.93 | 1.13 | 10.2 | -- | -- | -4.92 | -- | -- | 0.611 | -- | 15.4 | 819 | -- | -- |
| 1048.49 | 1.51 | 10.3 | -- | -- | -- | -- | -- | -0.036 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 284.80 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 2 |
| 2 | 284.85 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 2 |
| 22 | 291.28 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 19 |
| 35 | 293.23 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 19 |
| 54 | 294.96 | temperature | 10 | 270 | > th | dose dependent | rect. | 22 | 23 |
| 57 | 295.16 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 21 |
| 113 | 298.95 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 4 |
| 159 | 299.93 | radiation | 20 | 1440 | < th | dose dependent | rect. | 18 | 7 |
| 174 | 300.17 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 210 | 300.61 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 20 |
| 246 | 300.94 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 343 | 301.54 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 421 | 301.96 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 17 |
| 440 | 302.05 | temperature | 15 | 1440 | > th | dose dependent | sin | 4 | NA |
| 477 | 302.28 | temperature | 15 | 1440 | > th | dose dependent | no | NA | NA |
| 481 | 302.29 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 13 |
| 548 | 302.57 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 676 | 303.19 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 22 |
| 941 | 304.41 | radiation | 30 | 4320 | > th | dose independent | rect. | 7 | 1 |