BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0196600 Os03g0196600|Os03g0196600
(315 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G55920.1 | chr1:20912378-20913322 FORWARD LENGTH=315 224 5e-59
AT3G13110.1 | chr3:4214939-4216114 REVERSE LENGTH=392 223 1e-58
AT5G56760.1 | chr5:22961498-22962582 REVERSE LENGTH=313 207 8e-54
AT4G35640.1 | chr4:16905755-16907977 REVERSE LENGTH=356 175 3e-44
AT2G17640.1 | chr2:7668238-7670226 REVERSE LENGTH=324 175 4e-44
>AT1G55920.1 | chr1:20912378-20913322 FORWARD LENGTH=315
Length = 314
Score = 224 bits (571), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 126/269 (46%), Positives = 158/269 (58%), Gaps = 8/269 (2%)
Query: 52 DYVWDVLRAEAQDDADDEPLLRKFYHDLVXXXXXXXXXXXXXXXXXXCIPGALPQDQLRD 111
D VW + EA+ D EP+L +Y+ + LP + L +
Sbjct: 46 DDVWIKMLEEAKSDVKQEPILSNYYYASITSHRSLESALAHILSVKLSNLN-LPSNTLFE 104
Query: 112 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAKMVHCFLYYKGFXXXXXXXXXXXXWSDNR 171
C VHCFL +KGF W NR
Sbjct: 105 LFISVLEESPEIIESTKQDLIAVKERDPACISYVHCFLGFKGFLACQAHRIAHTLWKQNR 164
Query: 172 RAPALLLQSRASEVFGVDIHPGARIGCGILLDHATGVVIGETAVVGYDVSILHGVTLGGT 231
+ ALL+Q+R SE F VDIHPGA+IG GILLDHATGVVIGETAVVG +VSILHGVTLGGT
Sbjct: 165 KIVALLIQNRVSESFAVDIHPGAKIGKGILLDHATGVVIGETAVVGDNVSILHGVTLGGT 224
Query: 232 GKESGDRHPKVGDGVLIGAGASVLGNVHIGDGAKIGAGAVVLRDVADGTTAVGNPAKPII 291
GK+SGDRHPK+GDGVLIGAG+ +LGN+ IG+GAKIG+G+VV++DV TTAVGNPA+ +I
Sbjct: 225 GKQSGDRHPKIGDGVLIGAGSCILGNITIGEGAKIGSGSVVVKDVPARTTAVGNPAR-LI 283
Query: 292 GKKAAPQRRPEELPGVTMEQ-----RWSD 315
G K P R+ +++P +TM+Q WSD
Sbjct: 284 GGKENP-RKHDKIPCLTMDQTSYLTEWSD 311
>AT3G13110.1 | chr3:4214939-4216114 REVERSE LENGTH=392
Length = 391
Score = 223 bits (568), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 123/269 (45%), Positives = 156/269 (57%), Gaps = 8/269 (2%)
Query: 52 DYVWDVLRAEAQDDADDEPLLRKFYHDLVXXXXXXXXXXXXXXXXXXCIPGALPQDQLRD 111
D VW +R EA+ D EP++ +YH + LP + L D
Sbjct: 123 DDVWAKIREEAKSDIAKEPIVSAYYHASIVSQRSLEAALANTLSVKLSNLN-LPSNTLFD 181
Query: 112 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAKMVHCFLYYKGFXXXXXXXXXXXXWSDNR 171
C VHCFL++KGF W+ +R
Sbjct: 182 LFSGVLQGNPDIVESVKLDLLAVKERDPACISYVHCFLHFKGFLACQAHRIAHELWTQDR 241
Query: 172 RAPALLLQSRASEVFGVDIHPGARIGCGILLDHATGVVIGETAVVGYDVSILHGVTLGGT 231
+ ALL+Q+R SE F VD HPGA+IG GILLDHAT +VIGETAVVG +VSILH VTLGGT
Sbjct: 242 KILALLIQNRVSEAFAVDFHPGAKIGTGILLDHATAIVIGETAVVGNNVSILHNVTLGGT 301
Query: 232 GKESGDRHPKVGDGVLIGAGASVLGNVHIGDGAKIGAGAVVLRDVADGTTAVGNPAKPII 291
GK+ GDRHPK+GDGVLIGAG +LGN+ IG+GAKIGAG+VVL+DV TTAVGNPA+ ++
Sbjct: 302 GKQCGDRHPKIGDGVLIGAGTCILGNITIGEGAKIGAGSVVLKDVPPRTTAVGNPAR-LL 360
Query: 292 GKKAAPQRRPEELPGVTMEQ-----RWSD 315
G K P+ +++PG+TM+Q WSD
Sbjct: 361 GGKDNPKTH-DKIPGLTMDQTSHISEWSD 388
>AT5G56760.1 | chr5:22961498-22962582 REVERSE LENGTH=313
Length = 312
Score = 207 bits (526), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 119/267 (44%), Positives = 145/267 (54%), Gaps = 7/267 (2%)
Query: 54 VWDVLRAEAQDDADDEPLLRKFYHDLVXXXXXXXXXXXXXXXXXXCIPGALPQDQLRDXX 113
+W ++AEA+ DA+ EP L + + + C L L D
Sbjct: 45 LWTQIKAEARRDAEAEPALASYLYSTILSHSSLERSISFHLGNKLC-SSTLLSTLLYDLF 103
Query: 114 XXXXXXXXXXXXXXXXXXXXXXXXXXXCAKMVHCFLYYKGFXXXXXXXXXXXXWSDNRRA 173
C HC L YKGF W+ +R+
Sbjct: 104 LNTFSSDPSLRNATVADLRAARVRDPACISFSHCLLNYKGFLAIQAHRVSHKLWTQSRKP 163
Query: 174 PALLLQSRASEVFGVDIHPGARIGCGILLDHATGVVIGETAVVGYDVSILHGVTLGGTGK 233
AL L SR S+VF VDIHP A+IG GILLDHATGVV+GETAV+G +VSILH VTLGGTGK
Sbjct: 164 LALALHSRISDVFAVDIHPAAKIGKGILLDHATGVVVGETAVIGNNVSILHHVTLGGTGK 223
Query: 234 ESGDRHPKVGDGVLIGAGASVLGNVHIGDGAKIGAGAVVLRDVADGTTAVGNPAKPIIGK 293
GDRHPK+GDG LIGAGA++LGNV IG GAK+GAG+VVL DV TAVGNPA+ ++G
Sbjct: 224 ACGDRHPKIGDGCLIGAGATILGNVKIGAGAKVGAGSVVLIDVPCRGTAVGNPAR-LVGG 282
Query: 294 KAAPQRRPEELPGVTMEQ-----RWSD 315
K P EE PG +M+ WSD
Sbjct: 283 KEKPTIHDEECPGESMDHTSFISEWSD 309
>AT4G35640.1 | chr4:16905755-16907977 REVERSE LENGTH=356
Length = 355
Score = 175 bits (443), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 93/171 (54%), Positives = 112/171 (65%), Gaps = 7/171 (4%)
Query: 141 CAKMVHCFLYYKGFXXXXXXXXXXXXWSDNRRAPALLLQSRASEVFGVDIHPGARIGCGI 200
C L+ KG+ W R+ AL LQSR SEVFG+DIHP ARIG GI
Sbjct: 159 CLSYSSAILHLKGYLALQAYRVAHKLWKQGRKLLALALQSRVSEVFGIDIHPAARIGKGI 218
Query: 201 LLDHATGVVIGETAVVGYDVSILHGVTLGGTGKESGDRHPKVGDGVLIGAGASVLGNVHI 260
LLDH TGVVIGETAV+G VSILHGVTLGGTGKE+GDRHP +GDG L+GA ++LGN+ I
Sbjct: 219 LLDHGTGVVIGETAVIGDRVSILHGVTLGGTGKETGDRHPNIGDGALLGACVTILGNIKI 278
Query: 261 GDGAKIGAGAVVLRDVADGTTAVGNPAKPIIGKKAAPQRRPEELPGVTMEQ 311
G GA + AG++VL+DV + GNPAK +IG E+ P +TME
Sbjct: 279 GAGAMVAAGSLVLKDVPSHSMVAGNPAK-LIGFV------DEQDPSMTMEH 322
>AT2G17640.1 | chr2:7668238-7670226 REVERSE LENGTH=324
Length = 323
Score = 175 bits (443), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 87/150 (58%), Positives = 106/150 (70%)
Query: 141 CAKMVHCFLYYKGFXXXXXXXXXXXXWSDNRRAPALLLQSRASEVFGVDIHPGARIGCGI 200
C L+ KG+ W++ R+ AL LQSR SEVFG+DIHP ARIG GI
Sbjct: 122 CLSYSSAILHLKGYHALQAYRVAHKLWNEGRKLLALALQSRISEVFGIDIHPAARIGEGI 181
Query: 201 LLDHATGVVIGETAVVGYDVSILHGVTLGGTGKESGDRHPKVGDGVLIGAGASVLGNVHI 260
LLDH TGVVIGETAV+G VSILHGVTLGGTGKE+GDRHPK+G+G L+GA ++LGN+ I
Sbjct: 182 LLDHGTGVVIGETAVIGNGVSILHGVTLGGTGKETGDRHPKIGEGALLGACVTILGNISI 241
Query: 261 GDGAKIGAGAVVLRDVADGTTAVGNPAKPI 290
G GA + AG++VL+DV + GNPAK I
Sbjct: 242 GAGAMVAAGSLVLKDVPSHSVVAGNPAKLI 271
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.141 0.450
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,687,919
Number of extensions: 211461
Number of successful extensions: 494
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 482
Number of HSP's successfully gapped: 5
Length of query: 315
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 217
Effective length of database: 8,419,801
Effective search space: 1827096817
Effective search space used: 1827096817
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)