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Os03g0133900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Serine acetyltransferase (EC 2.3.1.30) (Sat-106).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.7 (0.0272) R2 : 0.823
β1 : -2.02 (0.0995) R2dD : 0.167 R2D : 0.0971
β2 : 2.86 (0.0709) R2dC : 0.637 R2C : 0.586
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.867 (0.058) R2dN8 : 0.117 R2N8 : 0.0292
σ : 0.511
deviance : 118.95
__
_____
C
peak time of C : 5.92
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
88.38 0.442 10.7 -1.96 2.58 1.38 2.1 -0.434 -0.795 8.21 1.068 230 -- --
88.76 0.439 10.7 -1.98 2.57 1.4 2.24 -- -0.799 8.27 0.17 224 -- --
97.87 0.461 10.7 -1.86 2.69 1.44 -- -0.982 -0.785 8.23 0.1697 203 -- --
103.96 0.475 10.7 -1.87 2.68 1.44 -- -- -0.789 8.27 0.1693 200 -- --
188.92 0.64 10.9 -2.31 -- 2.65 -- -1.06 -1.47 -- 1.549 682 -- --
110.69 0.493 10.7 -2.04 2.85 -- 1.87 -- -0.859 6.02 -- -- -- --
118.95 0.511 10.7 -2.02 2.86 -- -- -- -0.867 5.92 -- -- -- --
110.31 0.489 10.8 -1.59 -- 3.35 -- -- -0.768 -- 0.17 733 -- --
197.66 0.655 10.7 -- 2.79 1.58 -- -- -0.663 8.35 0.003216 189 -- --
544.25 1.09 10.8 -1.94 -- -- -- -- -0.801 -- -- -- -- --
226.62 0.704 10.7 -- 2.83 -- -- -- -0.642 5.95 -- -- -- --
179.3 0.624 10.8 -- -- 3.74 -- -- -0.624 -- 6.883e-07 747 -- --
643.07 1.18 10.7 -- -- -- -- -- -0.586 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 82.02 humidity 60.0 720 > th dose independent rect. 17 12
2 83.49 humidity 60.0 720 > th dose independent rect. 17 4
4 84.59 temperature 10.0 720 > th dose dependent rect. 7 1
5 84.85 temperature 30.0 720 < th dose independent rect. 17 4
7 84.87 temperature 30.0 720 < th dose independent rect. 17 12
8 85.08 radiation 1.0 720 < th dose dependent rect. 18 20
12 85.27 radiation 1.0 270 > th dose independent rect. 10 23
17 85.66 radiation 1.0 720 < th dose dependent rect. 18 15
27 86.35 radiation 40.0 270 < th dose dependent sin 13 NA
28 86.48 temperature 10.0 270 > th dose dependent rect. 5 12
35 86.78 temperature 10.0 720 > th dose dependent rect. 5 5
36 86.79 temperature 10.0 90 > th dose dependent rect. 7 12
49 87.28 radiation 1.0 90 < th dose dependent sin 15 NA
53 87.56 radiation 1.0 270 > th dose independent sin 21 NA
63 87.75 radiation 20.0 270 < th dose independent sin 13 NA
69 87.88 radiation 1.0 720 < th dose independent rect. 18 20
82 88.22 radiation 1.0 720 < th dose independent rect. 18 13
85 88.34 atmosphere 995.0 270 > th dose independent rect. 13 14
91 88.39 radiation 1.0 270 < th dose dependent rect. 2 23
95 88.49 radiation 1.0 720 < th dose dependent rect. 1 13
98 88.52 radiation 1.0 270 < th dose independent sin 17 NA
102 88.55 radiation 1.0 720 < th dose independent rect. 18 15
113 88.64 temperature 25.0 720 > th dose independent rect. 7 1
119 88.68 radiation 1.0 720 < th dose dependent sin 10 NA
129 88.85 humidity 50.0 720 > th dose independent rect. 9 20
132 88.89 radiation 1.0 270 < th dose dependent rect. 14 19
136 88.91 humidity 70.0 30 > th dose independent sin 13 NA
139 88.94 radiation 1.0 720 < th dose dependent sin 3 NA
167 89.16 radiation 20.0 720 < th dose dependent rect. 17 14
171 89.20 radiation 1.0 720 < th dose dependent rect. 1 7
184 89.27 radiation 1.0 720 > th dose independent rect. 18 15
186 89.28 temperature 10.0 270 > th dose independent rect. 2 11
187 89.28 atmosphere 995.0 270 > th dose independent rect. 2 11
188 89.28 atmosphere 1015.0 270 < th dose independent rect. 2 11
189 89.28 temperature 10.0 270 > th dose independent rect. 13 13
197 89.32 humidity 70.0 10 > th dose independent rect. 19 12
199 89.34 atmosphere 995.0 270 > th dose independent rect. 13 18
211 89.41 precipitation 0.1 270 < th dose independent rect. 2 11
213 89.41 precipitation 0.1 270 < th dose dependent rect. 2 11
216 89.42 radiation 10.0 720 < th dose dependent rect. 17 4
218 89.43 radiation 1.0 270 < th dose independent rect. 14 15
224 89.45 atmosphere 995.0 720 > th dose independent rect. 7 10
236 89.52 radiation 1.0 270 < th dose dependent rect. 14 7
245 89.55 wind 1.0 90 > th dose independent rect. 19 12
258 89.64 radiation 1.0 270 < th dose independent rect. 6 23
260 89.65 wind 9.0 270 < th dose independent rect. 2 11
266 89.67 wind 9.0 270 < th dose independent rect. 13 13
271 89.69 humidity 70.0 720 > th dose independent rect. 19 1
286 89.72 radiation 1.0 270 < th dose independent rect. 4 23
298 89.79 humidity 50.0 720 > th dose independent rect. 9 12
299 89.79 radiation 1.0 270 < th dose independent rect. 2 23
302 89.80 radiation 1.0 720 < th dose independent rect. 1 13
313 89.84 radiation 1.0 270 < th dose independent rect. 14 19
315 89.85 wind 1.0 270 > th dose independent rect. 13 14
317 89.85 radiation 1.0 270 < th dose dependent rect. 6 23
318 89.86 atmosphere 995.0 720 > th dose independent rect. 5 14
320 89.86 atmosphere 995.0 720 > th dose independent rect. 21 20
326 89.88 wind 1.0 720 > th dose independent rect. 17 13
327 89.88 radiation 30.0 90 < th dose dependent rect. 19 12
341 89.96 atmosphere 995.0 270 > th dose independent rect. 12 21
343 89.97 temperature 10.0 1440 > th dose independent rect. 8 12
346 89.97 temperature 10.0 1440 > th dose independent rect. 20 12
349 89.97 temperature 30.0 1440 < th dose independent rect. 20 12
353 89.97 humidity 50.0 1440 > th dose independent rect. 20 12
358 89.97 atmosphere 995.0 1440 > th dose independent rect. 20 12
366 89.99 radiation 1.0 270 < th dose independent rect. 14 7
388 90.08 radiation 1.0 720 > th dose independent rect. 18 23
393 90.10 humidity 50.0 720 > th dose independent rect. 10 10
396 90.11 humidity 70.0 720 > th dose independent rect. 7 1
401 90.11 humidity 50.0 720 > th dose independent rect. 8 14
414 90.14 radiation 1.0 270 < th dose dependent no NA NA
425 90.18 radiation 1.0 720 < th dose independent rect. 1 6
458 90.26 temperature 25.0 90 > th dose independent rect. 7 12
461 90.27 radiation 1.0 720 < th dose independent sin 10 NA
466 90.29 wind 7.0 90 < th dose independent rect. 19 12
480 90.33 wind 7.0 720 < th dose independent rect. 19 1
484 90.34 radiation 1.0 720 > th dose independent rect. 7 1
497 90.37 temperature 10.0 90 > th dose dependent rect. 23 20
510 90.42 wind 1.0 270 > th dose independent rect. 3 10
563 90.58 radiation 1.0 720 < th dose independent rect. 1 8
612 90.74 radiation 1.0 720 < th dose dependent rect. 18 9
622 90.77 wind 1.0 720 > th dose independent rect. 13 6
628 90.80 wind 9.0 90 < th dose independent rect. 7 12
632 90.83 temperature 10.0 90 > th dose independent rect. 7 12
633 90.83 temperature 10.0 90 > th dose independent rect. 19 12
634 90.83 temperature 30.0 90 < th dose independent rect. 19 12
635 90.83 humidity 50.0 90 > th dose independent rect. 19 12
637 90.83 atmosphere 995.0 90 > th dose independent rect. 19 12
638 90.83 atmosphere 1015.0 90 < th dose independent rect. 7 12
639 90.83 radiation 40.0 90 < th dose independent rect. 19 12
640 90.83 radiation 1.0 270 > th dose independent rect. 5 14
656 90.87 radiation 1.0 270 < th dose independent no NA NA
661 90.87 radiation 20.0 90 < th dose dependent rect. 19 14
664 90.88 radiation 1.0 270 > th dose independent no NA NA
686 90.88 temperature 30.0 720 < th dose independent rect. 8 21
711 90.88 radiation 40.0 720 < th dose dependent rect. 1 6
720 90.92 radiation 1.0 720 < th dose independent rect. 18 3
724 90.93 atmosphere 995.0 90 > th dose independent rect. 7 12
733 90.97 precipitation 0.1 270 < th dose independent rect. 13 13
736 90.97 precipitation 0.1 270 < th dose dependent rect. 13 13
755 91.04 wind 1.0 720 > th dose independent rect. 7 10
756 91.04 wind 1.0 720 > th dose independent rect. 9 21
765 91.07 wind 7.0 720 < th dose independent rect. 19 10
789 91.12 radiation 40.0 720 < th dose independent rect. 7 1
790 91.12 precipitation 0.1 720 < th dose independent rect. 7 1
791 91.12 precipitation 0.1 720 < th dose dependent rect. 7 1
815 91.20 wind 7.0 720 < th dose independent rect. 7 1
843 91.30 temperature 20.0 720 > th dose independent rect. 7 10
859 91.35 temperature 10.0 720 > th dose independent rect. 7 1
861 91.35 temperature 30.0 720 < th dose independent rect. 7 1
862 91.35 humidity 50.0 720 > th dose independent rect. 7 1
864 91.35 atmosphere 995.0 720 > th dose independent rect. 7 1
865 91.35 atmosphere 1015.0 720 < th dose independent rect. 7 1
866 91.35 temperature 10.0 720 > th dose independent rect. 8 23
868 91.36 precipitation 0.1 90 < th dose independent rect. 19 12
871 91.36 precipitation 0.1 90 < th dose dependent rect. 19 12
879 91.39 wind 9.0 720 < th dose independent rect. 19 18
897 91.44 radiation 1.0 720 > th dose independent rect. 5 4
899 91.44 radiation 1.0 720 < th dose dependent rect. 22 23
900 91.46 temperature 10.0 720 > th dose independent rect. 19 1
903 91.46 atmosphere 995.0 720 > th dose independent rect. 19 1
904 91.46 atmosphere 1015.0 720 < th dose independent rect. 19 1
905 91.46 radiation 1.0 720 < th dose independent rect. 19 1
912 91.46 temperature 10.0 720 > th dose independent rect. 20 23
923 91.49 temperature 10.0 270 > th dose independent rect. 7 6
924 91.49 atmosphere 995.0 270 > th dose independent rect. 7 6
925 91.49 atmosphere 1015.0 270 < th dose independent rect. 7 6
927 91.49 temperature 10.0 270 > th dose independent rect. 13 18
933 91.50 radiation 20.0 270 < th dose dependent rect. 15 7
937 91.51 precipitation 0.1 270 < th dose independent rect. 13 18
938 91.51 atmosphere 995.0 720 > th dose independent rect. 20 23
939 91.51 precipitation 0.1 270 < th dose dependent rect. 13 18
943 91.53 precipitation 0.1 270 < th dose independent rect. 7 6
946 91.53 precipitation 0.1 270 < th dose dependent rect. 7 6
952 91.55 wind 7.0 720 < th dose independent rect. 5 5
958 91.55 wind 9.0 270 < th dose independent rect. 22 10
959 91.55 temperature 10.0 270 > th dose independent rect. 22 10
960 91.55 temperature 30.0 270 < th dose independent rect. 22 10
961 91.55 humidity 50.0 270 > th dose independent rect. 22 10
963 91.55 atmosphere 995.0 270 > th dose independent rect. 22 10
969 91.55 temperature 10.0 270 > th dose independent rect. 8 14
971 91.55 wind 9.0 270 < th dose independent rect. 13 18
973 91.56 temperature 10.0 720 > th dose independent rect. 13 6
974 91.56 atmosphere 1015.0 720 < th dose independent rect. 13 6
975 91.56 radiation 40.0 270 < th dose independent rect. 22 10
977 91.56 temperature 10.0 720 > th dose independent rect. 19 18
978 91.56 atmosphere 995.0 720 > th dose independent rect. 19 18
982 91.58 wind 9.0 270 < th dose independent rect. 7 6
983 91.58 wind 9.0 720 < th dose independent rect. 17 14
998 91.62 humidity 60.0 720 > th dose independent rect. 17 18