BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0133900 Os03g0133900|AK067089
(354 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G35640.1 | chr4:16905755-16907977 REVERSE LENGTH=356 377 e-105
AT2G17640.1 | chr2:7668238-7670226 REVERSE LENGTH=324 368 e-102
AT3G13110.1 | chr3:4214939-4216114 REVERSE LENGTH=392 243 8e-65
AT5G56760.1 | chr5:22961498-22962582 REVERSE LENGTH=313 239 2e-63
AT1G55920.1 | chr1:20912378-20913322 FORWARD LENGTH=315 236 2e-62
>AT4G35640.1 | chr4:16905755-16907977 REVERSE LENGTH=356
Length = 355
Score = 377 bits (968), Expect = e-105, Method: Compositional matrix adjust.
Identities = 179/305 (58%), Positives = 228/305 (74%)
Query: 50 ETMFPIYVMGXXXXXXXXXXXGIVDAAGDPIWXXXXXXXXXXXXXXPILSSFLYASVLSH 109
E +FP+Y G +++ DPIW P+LSSFLYAS+LSH
Sbjct: 43 ERIFPVYARGTLNPVADPVLLDFTNSSYDPIWDSIREEAKLEAEEEPVLSSFLYASILSH 102
Query: 110 DCLERALSFVLANRLEDPTLLATQLIDIFNDVMMNNKDIRRSIRLDAQAFKDRDPACAQY 169
DCLE+ALSFVLANRL++PTLLATQL+DIF +VM++++ I+ SIRLD QAFKDRDPAC Y
Sbjct: 103 DCLEQALSFVLANRLQNPTLLATQLMDIFCNVMVHDRGIQSSIRLDVQAFKDRDPACLSY 162
Query: 170 SWALLYLKGYHSVQSYRIAHVLWNQGRKVLALALQSRISEVFAVDIHPAARIGEGILLDH 229
S A+L+LKGY ++Q+YR+AH LW QGRK+LALALQSR+SEVF +DIHPAARIG+GILLDH
Sbjct: 163 SSAILHLKGYLALQAYRVAHKLWKQGRKLLALALQSRVSEVFGIDIHPAARIGKGILLDH 222
Query: 230 GTGLVIGETAIVGNWVSLMQGVTLGGTGKENGDRHPKXXXXXXXXXXXXXXXXXNVGEGA 289
GTG+VIGETA++G+ VS++ GVTLGGTGKE GDRHP +G GA
Sbjct: 223 GTGVVIGETAVIGDRVSILHGVTLGGTGKETGDRHPNIGDGALLGACVTILGNIKIGAGA 282
Query: 290 MIAAGSLVLKDVPPHSMAVGNPAKVVGYKDKEDPSLTMKHDARRDYFEHVAVSFSDDKAN 349
M+AAGSLVLKDVP HSM GNPAK++G+ D++DPS+TM+HDA R++F++VAV++ + N
Sbjct: 283 MVAAGSLVLKDVPSHSMVAGNPAKLIGFVDEQDPSMTMEHDATREFFQNVAVAYRETIPN 342
Query: 350 GSVVK 354
GS V
Sbjct: 343 GSSVS 347
>AT2G17640.1 | chr2:7668238-7670226 REVERSE LENGTH=324
Length = 323
Score = 368 bits (944), Expect = e-102, Method: Compositional matrix adjust.
Identities = 178/301 (59%), Positives = 220/301 (73%), Gaps = 3/301 (0%)
Query: 50 ETMFPIYVMGXXXXXXXXXXXGIVDAAGDPIWXXXXXXXXXXXXXXPILSSFLYASVLSH 109
E+ F +Y G ++D DPIW PILSSFLYA +L+H
Sbjct: 9 ESGFEVYAKGTHKSEFDSN---LLDPRSDPIWDAIREEAKLEAEKEPILSSFLYAGILAH 65
Query: 110 DCLERALSFVLANRLEDPTLLATQLIDIFNDVMMNNKDIRRSIRLDAQAFKDRDPACAQY 169
DCLE+AL FVLANRL++PTLLATQL+DIF VMM++K I+ SIR D QAFKDRDPAC Y
Sbjct: 66 DCLEQALGFVLANRLQNPTLLATQLLDIFYGVMMHDKGIQSSIRHDLQAFKDRDPACLSY 125
Query: 170 SWALLYLKGYHSVQSYRIAHVLWNQGRKVLALALQSRISEVFAVDIHPAARIGEGILLDH 229
S A+L+LKGYH++Q+YR+AH LWN+GRK+LALALQSRISEVF +DIHPAARIGEGILLDH
Sbjct: 126 SSAILHLKGYHALQAYRVAHKLWNEGRKLLALALQSRISEVFGIDIHPAARIGEGILLDH 185
Query: 230 GTGLVIGETAIVGNWVSLMQGVTLGGTGKENGDRHPKXXXXXXXXXXXXXXXXXNVGEGA 289
GTG+VIGETA++GN VS++ GVTLGGTGKE GDRHPK ++G GA
Sbjct: 186 GTGVVIGETAVIGNGVSILHGVTLGGTGKETGDRHPKIGEGALLGACVTILGNISIGAGA 245
Query: 290 MIAAGSLVLKDVPPHSMAVGNPAKVVGYKDKEDPSLTMKHDARRDYFEHVAVSFSDDKAN 349
M+AAGSLVLKDVP HS+ GNPAK++ +++DPSL MKHDA +++F HVA + ++N
Sbjct: 246 MVAAGSLVLKDVPSHSVVAGNPAKLIRVMEEQDPSLAMKHDATKEFFRHVADGYKGAQSN 305
Query: 350 G 350
G
Sbjct: 306 G 306
>AT3G13110.1 | chr3:4214939-4216114 REVERSE LENGTH=392
Length = 391
Score = 243 bits (621), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 124/259 (47%), Positives = 163/259 (62%), Gaps = 5/259 (1%)
Query: 74 DAAGDPIWXXXXXXXXXXXXXXPILSSFLYASVLSHDCLERALSFVLANRLEDPTLLATQ 133
DA D +W PI+S++ +AS++S LE AL+ L+ +L + L +
Sbjct: 119 DAEVDDVWAKIREEAKSDIAKEPIVSAYYHASIVSQRSLEAALANTLSVKLSNLNLPSNT 178
Query: 134 LIDIFNDVMMNNKDIRRSIRLDAQAFKDRDPACAQYSWALLYLKGYHSVQSYRIAHVLWN 193
L D+F+ V+ N DI S++LD A K+RDPAC Y L+ KG+ + Q++RIAH LW
Sbjct: 179 LFDLFSGVLQGNPDIVESVKLDLLAVKERDPACISYVHCFLHFKGFLACQAHRIAHELWT 238
Query: 194 QGRKVLALALQSRISEVFAVDIHPAARIGEGILLDHGTGLVIGETAIVGNWVSLMQGVTL 253
Q RK+LAL +Q+R+SE FAVD HP A+IG GILLDH T +VIGETA+VGN VS++ VTL
Sbjct: 239 QDRKILALLIQNRVSEAFAVDFHPGAKIGTGILLDHATAIVIGETAVVGNNVSILHNVTL 298
Query: 254 GGTGKENGDRHPKXXXXXXXXXXXXXXXXXNVGEGAMIAAGSLVLKDVPPHSMAVGNPAK 313
GGTGK+ GDRHPK +GEGA I AGS+VLKDVPP + AVGNPA+
Sbjct: 299 GGTGKQCGDRHPKIGDGVLIGAGTCILGNITIGEGAKIGAGSVVLKDVPPRTTAVGNPAR 358
Query: 314 VVGYKDKED-----PSLTM 327
++G KD P LTM
Sbjct: 359 LLGGKDNPKTHDKIPGLTM 377
>AT5G56760.1 | chr5:22961498-22962582 REVERSE LENGTH=313
Length = 312
Score = 239 bits (610), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 122/258 (47%), Positives = 165/258 (63%), Gaps = 6/258 (2%)
Query: 80 IWXXXXXXXXXXXXXXPILSSFLYASVLSHDCLERALSFVLANRLEDPTLLATQLIDIFN 139
+W P L+S+LY+++LSH LER++SF L N+L TLL+T L D+F
Sbjct: 45 LWTQIKAEARRDAEAEPALASYLYSTILSHSSLERSISFHLGNKLCSSTLLSTLLYDLFL 104
Query: 140 DVMMNNKDIRRSIRLDAQAFKDRDPACAQYSWALLYLKGYHSVQSYRIAHVLWNQGRKVL 199
+ ++ +R + D +A + RDPAC +S LL KG+ ++Q++R++H LW Q RK L
Sbjct: 105 NTFSSDPSLRNATVADLRAARVRDPACISFSHCLLNYKGFLAIQAHRVSHKLWTQSRKPL 164
Query: 200 ALALQSRISEVFAVDIHPAARIGEGILLDHGTGLVIGETAIVGNWVSLMQGVTLGGTGKE 259
ALAL SRIS+VFAVDIHPAA+IG+GILLDH TG+V+GETA++GN VS++ VTLGGTGK
Sbjct: 165 ALALHSRISDVFAVDIHPAAKIGKGILLDHATGVVVGETAVIGNNVSILHHVTLGGTGKA 224
Query: 260 NGDRHPKXXXXXXXXXXXXXXXXXNVGEGAMIAAGSLVLKDVPPHSMAVGNPAKVVGYK- 318
GDRHPK +G GA + AGS+VL DVP AVGNPA++VG K
Sbjct: 225 CGDRHPKIGDGCLIGAGATILGNVKIGAGAKVGAGSVVLIDVPCRGTAVGNPARLVGGKE 284
Query: 319 -----DKEDPSLTMKHDA 331
D+E P +M H +
Sbjct: 285 KPTIHDEECPGESMDHTS 302
>AT1G55920.1 | chr1:20912378-20913322 FORWARD LENGTH=315
Length = 314
Score = 236 bits (601), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 120/255 (47%), Positives = 164/255 (64%), Gaps = 5/255 (1%)
Query: 78 DPIWXXXXXXXXXXXXXXPILSSFLYASVLSHDCLERALSFVLANRLEDPTLLATQLIDI 137
D +W PILS++ YAS+ SH LE AL+ +L+ +L + L + L ++
Sbjct: 46 DDVWIKMLEEAKSDVKQEPILSNYYYASITSHRSLESALAHILSVKLSNLNLPSNTLFEL 105
Query: 138 FNDVMMNNKDIRRSIRLDAQAFKDRDPACAQYSWALLYLKGYHSVQSYRIAHVLWNQGRK 197
F V+ + +I S + D A K+RDPAC Y L KG+ + Q++RIAH LW Q RK
Sbjct: 106 FISVLEESPEIIESTKQDLIAVKERDPACISYVHCFLGFKGFLACQAHRIAHTLWKQNRK 165
Query: 198 VLALALQSRISEVFAVDIHPAARIGEGILLDHGTGLVIGETAIVGNWVSLMQGVTLGGTG 257
++AL +Q+R+SE FAVDIHP A+IG+GILLDH TG+VIGETA+VG+ VS++ GVTLGGTG
Sbjct: 166 IVALLIQNRVSESFAVDIHPGAKIGKGILLDHATGVVIGETAVVGDNVSILHGVTLGGTG 225
Query: 258 KENGDRHPKXXXXXXXXXXXXXXXXXNVGEGAMIAAGSLVLKDVPPHSMAVGNPAKVVGY 317
K++GDRHPK +GEGA I +GS+V+KDVP + AVGNPA+++G
Sbjct: 226 KQSGDRHPKIGDGVLIGAGSCILGNITIGEGAKIGSGSVVVKDVPARTTAVGNPARLIGG 285
Query: 318 KD---KED--PSLTM 327
K+ K D P LTM
Sbjct: 286 KENPRKHDKIPCLTM 300
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.136 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,081,022
Number of extensions: 210789
Number of successful extensions: 390
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 382
Number of HSP's successfully gapped: 5
Length of query: 354
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 254
Effective length of database: 8,364,969
Effective search space: 2124702126
Effective search space used: 2124702126
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)