FiT-DB / Search/ Help/ Sample detail

Os01g0720700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Serine acetyltransferase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.1 (0.0271) R2 : 0.815
β1 : -- (--) R2dD : -- R2D : --
β2 : 3.14 (0.0709) R2dC : 0.798 R2C : 0.795
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.358 (0.0569) R2dN8 : 0.0207 R2N8 : 0.0176
σ : 0.51
deviance : 118.93
__
_____
C
peak time of C : 6.21
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
85.29 0.434 13.1 -0.318 3.14 0.847 1.35 -1.49 0.37 7.39 6.558 123 -- --
94.81 0.454 13 -0.353 3.03 1.08 2.24 -- 0.388 7.82 2.481 160 -- --
89.38 0.44 13.1 -0.284 3.2 0.869 -- -1.82 0.384 7.41 5.799 102 -- --
108.37 0.485 13.1 -0.234 3.05 0.953 -- -- 0.375 7.58 2.513 160 -- --
310.29 0.82 13.4 -0.656 -- 2.14 -- -2.06 -0.42 -- 0.4512 732 -- --
111.14 0.494 13.1 -0.311 3.13 -- 1.53 -- 0.331 6.29 -- -- -- --
116.63 0.506 13.1 -0.295 3.14 -- -- -- 0.325 6.2 -- -- -- --
118.62 0.507 13.1 0.043 -- 3.99 -- -- 0.441 -- 0.8729 757 -- --
109.87 0.488 13.1 -- 3.05 0.959 -- -- 0.395 7.6 2.039 160 -- --
628.99 1.17 13.1 -0.208 -- -- -- -- 0.394 -- -- -- -- --
118.93 0.51 13.1 -- 3.14 -- -- -- 0.358 6.21 -- -- -- --
118.53 0.507 13.1 -- -- 3.95 -- -- 0.461 -- 0.83 755 -- --
630.14 1.17 13.1 -- -- -- -- -- 0.417 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 77.17 radiation 20.0 90 < th dose dependent rect. 17 14
2 77.37 atmosphere 995.0 90 > th dose dependent rect. 17 13
3 77.48 wind 1.0 90 > th dose independent rect. 17 13
5 77.57 temperature 15.0 90 > th dose independent rect. 6 11
6 77.58 temperature 10.0 90 > th dose dependent rect. 6 11
7 77.65 temperature 30.0 90 < th dose independent rect. 17 13
8 77.75 humidity 60.0 90 > th dose independent rect. 17 13
20 78.84 wind 9.0 90 < th dose independent rect. 6 11
22 78.91 temperature 10.0 90 > th dose dependent rect. 23 18
23 78.96 atmosphere 995.0 10 > th dose dependent rect. 17 14
27 79.09 temperature 10.0 10 > th dose dependent rect. 7 11
36 79.40 precipitation 0.1 720 < th dose independent rect. 20 21
37 79.40 precipitation 0.1 720 < th dose dependent rect. 20 21
40 79.51 humidity 50.0 270 > th dose independent rect. 15 14
44 79.85 atmosphere 995.0 90 > th dose independent rect. 6 11
50 80.02 radiation 20.0 270 < th dose independent rect. 16 13
51 80.03 precipitation 0.1 90 < th dose independent rect. 6 11
52 80.03 precipitation 0.1 90 < th dose dependent rect. 6 11
53 80.08 atmosphere 995.0 90 > th dose independent rect. 17 13
54 80.11 temperature 10.0 10 > th dose dependent rect. 21 21
56 80.12 atmosphere 1015.0 90 < th dose independent rect. 6 11
57 80.12 temperature 10.0 90 > th dose independent rect. 17 13
62 80.19 wind 9.0 90 < th dose independent rect. 17 13
63 80.19 humidity 70.0 10 > th dose independent rect. 17 14
65 80.24 radiation 1.0 720 < th dose dependent rect. 18 1
67 80.32 wind 1.0 270 > th dose independent rect. 15 14
68 80.33 radiation 40.0 270 < th dose dependent rect. 15 14
71 80.35 temperature 10.0 270 > th dose dependent rect. 21 18
76 80.43 temperature 10.0 90 > th dose dependent rect. 20 21
78 80.46 temperature 15.0 720 > th dose independent rect. 5 3
82 80.53 precipitation 0.1 90 < th dose independent rect. 17 13
83 80.53 precipitation 0.1 90 < th dose dependent rect. 17 13
94 80.74 radiation 20.0 720 < th dose dependent rect. 17 3
97 80.86 radiation 1.0 270 > th dose independent rect. 18 22
101 80.96 temperature 10.0 10 > th dose dependent rect. 23 19
107 81.02 humidity 50.0 720 > th dose independent rect. 17 3
115 81.11 atmosphere 995.0 720 > th dose dependent rect. 17 3
120 81.17 radiation 1.0 270 > th dose independent rect. 5 11
164 81.36 temperature 30.0 270 < th dose independent rect. 15 14
181 81.53 wind 1.0 90 > th dose independent rect. 6 11
189 81.58 humidity 90.0 90 < th dose independent rect. 7 10
191 81.63 wind 9.0 10 < th dose independent rect. 7 11
196 81.66 atmosphere 995.0 270 > th dose dependent rect. 15 14
209 81.85 humidity 50.0 90 > th dose independent rect. 6 11
210 81.87 atmosphere 995.0 720 > th dose independent rect. 17 3
212 81.89 precipitation 0.1 720 < th dose independent rect. 5 3
213 81.89 precipitation 0.1 720 < th dose dependent rect. 5 3
244 82.13 radiation 1.0 30 > th dose independent sin 21 NA
250 82.20 radiation 1.0 720 < th dose dependent rect. 17 18
260 82.28 temperature 10.0 720 > th dose independent rect. 17 3
261 82.28 atmosphere 1015.0 720 < th dose independent rect. 17 3
262 82.28 radiation 30.0 720 < th dose independent rect. 17 3
264 82.28 temperature 10.0 720 > th dose independent rect. 20 21
266 82.29 wind 9.0 270 < th dose independent rect. 12 13
274 82.33 wind 9.0 720 < th dose independent rect. 17 3
277 82.35 temperature 30.0 720 < th dose independent rect. 17 3
283 82.39 radiation 40.0 720 < th dose independent rect. 5 3
288 82.40 wind 9.0 720 < th dose dependent rect. 5 3
293 82.43 wind 7.0 720 < th dose independent rect. 5 3
295 82.44 radiation 10.0 720 < th dose dependent rect. 17 12
306 82.51 temperature 30.0 720 < th dose independent rect. 5 3
307 82.51 humidity 50.0 720 > th dose independent rect. 5 3
309 82.51 atmosphere 995.0 720 > th dose independent rect. 5 3
310 82.51 atmosphere 1015.0 720 < th dose independent rect. 5 3
320 82.51 temperature 10.0 720 > th dose independent rect. 8 21
352 82.75 radiation 20.0 720 < th dose dependent rect. 17 10
364 82.79 radiation 1.0 720 < th dose independent rect. 17 3
369 82.81 temperature 10.0 720 > th dose dependent rect. 5 3
370 82.82 atmosphere 995.0 10 > th dose independent rect. 7 11
373 82.83 radiation 1.0 720 > th dose independent rect. 18 14
378 82.86 atmosphere 995.0 270 > th dose dependent rect. 15 6
384 82.91 temperature 10.0 270 > th dose independent rect. 1 11
385 82.91 temperature 10.0 10 > th dose independent rect. 7 11
387 82.91 atmosphere 995.0 270 > th dose independent rect. 1 11
388 82.91 atmosphere 1015.0 270 < th dose independent rect. 1 11
389 82.91 atmosphere 1015.0 10 < th dose independent rect. 7 11
390 82.91 temperature 10.0 270 > th dose independent rect. 12 13
391 82.91 temperature 10.0 10 > th dose independent rect. 18 13
393 82.91 radiation 20.0 10 < th dose independent rect. 18 13
399 82.92 atmosphere 995.0 10 > th dose independent rect. 18 13
402 82.96 radiation 1.0 720 < th dose independent rect. 18 1
403 82.97 temperature 10.0 1440 > th dose independent rect. 8 11
407 82.97 temperature 10.0 1440 > th dose independent rect. 19 13
410 82.97 temperature 30.0 1440 < th dose independent rect. 19 13
414 82.97 humidity 50.0 1440 > th dose independent rect. 19 13
416 82.97 atmosphere 995.0 1440 > th dose independent rect. 19 13
422 82.99 precipitation 0.1 10 < th dose independent rect. 7 11
423 82.99 precipitation 0.1 10 < th dose dependent rect. 7 11
463 83.23 wind 1.0 720 > th dose independent rect. 17 3
467 83.24 radiation 1.0 720 < th dose dependent sin 10 NA
472 83.27 wind 1.0 10 > th dose independent rect. 7 11
473 83.27 humidity 50.0 10 > th dose independent rect. 7 11
479 83.29 wind 9.0 720 < th dose independent rect. 20 21
490 83.38 humidity 50.0 270 > th dose independent rect. 1 11
498 83.41 wind 9.0 10 < th dose independent rect. 18 13
515 83.51 precipitation 0.1 10 < th dose independent rect. 18 13
518 83.51 precipitation 0.1 10 < th dose dependent rect. 18 13
521 83.52 precipitation 0.1 720 < th dose independent rect. 21 11
522 83.52 precipitation 0.1 720 < th dose dependent rect. 21 11
553 83.58 precipitation 0.1 720 < th dose independent rect. 20 13
554 83.58 precipitation 0.1 720 < th dose dependent rect. 20 13
556 83.59 wind 9.0 270 < th dose independent rect. 1 11
638 83.83 radiation 1.0 720 > th dose independent rect. 5 3
650 83.88 precipitation 0.1 720 < th dose independent rect. 3 14
652 83.88 precipitation 0.1 720 < th dose dependent rect. 3 14
736 84.05 precipitation 0.1 720 < th dose independent rect. 23 9
737 84.05 precipitation 0.1 720 < th dose dependent rect. 23 9
740 84.06 precipitation 0.1 270 < th dose independent rect. 12 13
741 84.06 precipitation 0.1 270 < th dose dependent rect. 12 13
742 84.06 radiation 1.0 30 < th dose dependent rect. 3 21
786 84.19 humidity 50.0 720 > th dose independent rect. 17 10
794 84.22 wind 1.0 720 > th dose independent rect. 8 12
795 84.22 radiation 1.0 720 < th dose independent rect. 17 12
802 84.24 precipitation 0.1 270 < th dose independent rect. 1 11
804 84.24 precipitation 0.1 270 < th dose dependent rect. 1 11
836 84.34 radiation 40.0 1440 < th dose independent rect. 18 13
844 84.35 radiation 1.0 30 < th dose dependent sin 18 NA
855 84.40 precipitation 0.1 720 < th dose independent rect. 17 3
856 84.40 precipitation 0.1 720 < th dose dependent rect. 17 3
867 84.45 temperature 30.0 270 < th dose independent rect. 15 6
871 84.46 radiation 1.0 30 < th dose independent rect. 3 21
880 84.49 radiation 1.0 270 < th dose independent rect. 23 22
883 84.50 radiation 1.0 90 < th dose independent rect. 2 23
902 84.53 radiation 1.0 90 < th dose independent rect. 16 19
909 84.55 humidity 50.0 720 > th dose independent rect. 8 21
920 84.59 radiation 1.0 720 < th dose dependent rect. 1 10
938 84.62 temperature 20.0 720 > th dose independent rect. 13 4
968 84.74 radiation 1.0 720 < th dose dependent rect. 24 19
980 84.78 radiation 10.0 90 < th dose dependent rect. 2 23
984 84.80 humidity 50.0 270 > th dose independent rect. 15 6
996 84.81 radiation 1.0 720 < th dose independent rect. 17 18