BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0720700 Os01g0720700|J075110D21
(303 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G56760.1 | chr5:22961498-22962582 REVERSE LENGTH=313 345 2e-95
AT3G13110.1 | chr3:4214939-4216114 REVERSE LENGTH=392 293 1e-79
AT1G55920.1 | chr1:20912378-20913322 FORWARD LENGTH=315 291 4e-79
AT4G35640.1 | chr4:16905755-16907977 REVERSE LENGTH=356 245 2e-65
AT2G17640.1 | chr2:7668238-7670226 REVERSE LENGTH=324 228 3e-60
>AT5G56760.1 | chr5:22961498-22962582 REVERSE LENGTH=313
Length = 312
Score = 345 bits (884), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 168/268 (62%), Positives = 198/268 (73%), Gaps = 5/268 (1%)
Query: 41 VWSQIKXXXXXXXXXXXXXXSFLYATVLSHPSLDRSLAFHLANKXXXXXXXXXXXYDLFV 100
+W+QIK S+LY+T+LSH SL+RS++FHL NK YDLF+
Sbjct: 45 LWTQIKAEARRDAEAEPALASYLYSTILSHSSLERSISFHLGNKLCSSTLLSTLLYDLFL 104
Query: 101 ASLAAHPTXXXXXXXXXXXXXSRDPACVGFSHCLLNYKGFLAIQAQRVAHVLWAQDRRXX 160
+ ++ P+ RDPAC+ FSHCLLNYKGFLAIQA RV+H LW Q R+
Sbjct: 105 NTFSSDPSLRNATVADLRAARVRDPACISFSHCLLNYKGFLAIQAHRVSHKLWTQSRKPL 164
Query: 161 XXXXQSRVAEVFAVDIHPAAAIGKGVLLDHATGVVIGETAVIGDNVSILHHVTLGGTGKA 220
SR+++VFAVDIHPAA IGKG+LLDHATGVV+GETAVIG+NVSILHHVTLGGTGKA
Sbjct: 165 ALALHSRISDVFAVDIHPAAKIGKGILLDHATGVVVGETAVIGNNVSILHHVTLGGTGKA 224
Query: 221 VGDRHPKIGDGVLIGAGATILGNVRIGAGAKIGAGSLVLIDVPPRTTAVGNPARLLGGKK 280
GDRHPKIGDG LIGAGATILGNV+IGAGAK+GAGS+VLIDVP R TAVGNPARL+GGK+
Sbjct: 225 CGDRHPKIGDGCLIGAGATILGNVKIGAGAKVGAGSVVLIDVPCRGTAVGNPARLVGGKE 284
Query: 281 G-----DDMPGESMDHTSFIQQWSDYSI 303
++ PGESMDHTSFI +WSDY I
Sbjct: 285 KPTIHDEECPGESMDHTSFISEWSDYII 312
>AT3G13110.1 | chr3:4214939-4216114 REVERSE LENGTH=392
Length = 391
Score = 293 bits (749), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 148/281 (52%), Positives = 182/281 (64%), Gaps = 4/281 (1%)
Query: 27 PAYPPPESDADESWVWSQIKXXXXXXXXXXXXXXSFLYATVLSHPSLDRSLAFHLANKXX 86
P + DA+ VW++I+ ++ +A+++S SL+ +LA L+ K
Sbjct: 111 PLLEDLDRDAEVDDVWAKIREEAKSDIAKEPIVSAYYHASIVSQRSLEAALANTLSVKLS 170
Query: 87 XXXXXXXXXYDLFVASLAAHPTXXXXXXXXXXXXXSRDPACVGFSHCLLNYKGFLAIQAQ 146
+DLF L +P RDPAC+ + HC L++KGFLA QA
Sbjct: 171 NLNLPSNTLFDLFSGVLQGNPDIVESVKLDLLAVKERDPACISYVHCFLHFKGFLACQAH 230
Query: 147 RVAHVLWAQDRRXXXXXXQSRVAEVFAVDIHPAAAIGKGVLLDHATGVVIGETAVIGDNV 206
R+AH LW QDR+ Q+RV+E FAVD HP A IG G+LLDHAT +VIGETAV+G+NV
Sbjct: 231 RIAHELWTQDRKILALLIQNRVSEAFAVDFHPGAKIGTGILLDHATAIVIGETAVVGNNV 290
Query: 207 SILHHVTLGGTGKAVGDRHPKIGDGVLIGAGATILGNVRIGAGAKIGAGSLVLIDVPPRT 266
SILH+VTLGGTGK GDRHPKIGDGVLIGAG ILGN+ IG GAKIGAGS+VL DVPPRT
Sbjct: 291 SILHNVTLGGTGKQCGDRHPKIGDGVLIGAGTCILGNITIGEGAKIGAGSVVLKDVPPRT 350
Query: 267 TAVGNPARLLGGKKG----DDMPGESMDHTSFIQQWSDYSI 303
TAVGNPARLLGGK D +PG +MD TS I +WSDY I
Sbjct: 351 TAVGNPARLLGGKDNPKTHDKIPGLTMDQTSHISEWSDYVI 391
>AT1G55920.1 | chr1:20912378-20913322 FORWARD LENGTH=315
Length = 314
Score = 291 bits (744), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 145/271 (53%), Positives = 180/271 (66%), Gaps = 4/271 (1%)
Query: 37 DESWVWSQIKXXXXXXXXXXXXXXSFLYATVLSHPSLDRSLAFHLANKXXXXXXXXXXXY 96
D+ VW ++ ++ YA++ SH SL+ +LA L+ K +
Sbjct: 44 DDDDVWIKMLEEAKSDVKQEPILSNYYYASITSHRSLESALAHILSVKLSNLNLPSNTLF 103
Query: 97 DLFVASLAAHPTXXXXXXXXXXXXXSRDPACVGFSHCLLNYKGFLAIQAQRVAHVLWAQD 156
+LF++ L P RDPAC+ + HC L +KGFLA QA R+AH LW Q+
Sbjct: 104 ELFISVLEESPEIIESTKQDLIAVKERDPACISYVHCFLGFKGFLACQAHRIAHTLWKQN 163
Query: 157 RRXXXXXXQSRVAEVFAVDIHPAAAIGKGVLLDHATGVVIGETAVIGDNVSILHHVTLGG 216
R+ Q+RV+E FAVDIHP A IGKG+LLDHATGVVIGETAV+GDNVSILH VTLGG
Sbjct: 164 RKIVALLIQNRVSESFAVDIHPGAKIGKGILLDHATGVVIGETAVVGDNVSILHGVTLGG 223
Query: 217 TGKAVGDRHPKIGDGVLIGAGATILGNVRIGAGAKIGAGSLVLIDVPPRTTAVGNPARLL 276
TGK GDRHPKIGDGVLIGAG+ ILGN+ IG GAKIG+GS+V+ DVP RTTAVGNPARL+
Sbjct: 224 TGKQSGDRHPKIGDGVLIGAGSCILGNITIGEGAKIGSGSVVVKDVPARTTAVGNPARLI 283
Query: 277 GGK----KGDDMPGESMDHTSFIQQWSDYSI 303
GGK K D +P +MD TS++ +WSDY I
Sbjct: 284 GGKENPRKHDKIPCLTMDQTSYLTEWSDYVI 314
>AT4G35640.1 | chr4:16905755-16907977 REVERSE LENGTH=356
Length = 355
Score = 245 bits (626), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 127/263 (48%), Positives = 163/263 (61%), Gaps = 1/263 (0%)
Query: 41 VWSQIKXXXXXXXXXXXXXXSFLYATVLSHPSLDRSLAFHLANKXXXXXXXXXXXYDLFV 100
+W I+ SFLYA++LSH L+++L+F LAN+ D+F
Sbjct: 73 IWDSIREEAKLEAEEEPVLSSFLYASILSHDCLEQALSFVLANRLQNPTLLATQLMDIFC 132
Query: 101 ASLAAHPTXXXXXXXXXXXXXSRDPACVGFSHCLLNYKGFLAIQAQRVAHVLWAQDRRXX 160
+ RDPAC+ +S +L+ KG+LA+QA RVAH LW Q R+
Sbjct: 133 NVMVHDRGIQSSIRLDVQAFKDRDPACLSYSSAILHLKGYLALQAYRVAHKLWKQGRKLL 192
Query: 161 XXXXQSRVAEVFAVDIHPAAAIGKGVLLDHATGVVIGETAVIGDNVSILHHVTLGGTGKA 220
QSRV+EVF +DIHPAA IGKG+LLDH TGVVIGETAVIGD VSILH VTLGGTGK
Sbjct: 193 ALALQSRVSEVFGIDIHPAARIGKGILLDHGTGVVIGETAVIGDRVSILHGVTLGGTGKE 252
Query: 221 VGDRHPKIGDGVLIGAGATILGNVRIGAGAKIGAGSLVLIDVPPRTTAVGNPARLLGGKK 280
GDRHP IGDG L+GA TILGN++IGAGA + AGSLVL DVP + GNPA+L+G
Sbjct: 253 TGDRHPNIGDGALLGACVTILGNIKIGAGAMVAAGSLVLKDVPSHSMVAGNPAKLIGFVD 312
Query: 281 GDDMPGESMDHTSFIQQWSDYSI 303
D P +M+H + + + + ++
Sbjct: 313 EQD-PSMTMEHDATREFFQNVAV 334
>AT2G17640.1 | chr2:7668238-7670226 REVERSE LENGTH=324
Length = 323
Score = 228 bits (581), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 120/251 (47%), Positives = 153/251 (60%), Gaps = 1/251 (0%)
Query: 41 VWSQIKXXXXXXXXXXXXXXSFLYATVLSHPSLDRSLAFHLANKXXXXXXXXXXXYDLFV 100
+W I+ SFLYA +L+H L+++L F LAN+ D+F
Sbjct: 36 IWDAIREEAKLEAEKEPILSSFLYAGILAHDCLEQALGFVLANRLQNPTLLATQLLDIFY 95
Query: 101 ASLAAHPTXXXXXXXXXXXXXSRDPACVGFSHCLLNYKGFLAIQAQRVAHVLWAQDRRXX 160
+ RDPAC+ +S +L+ KG+ A+QA RVAH LW + R+
Sbjct: 96 GVMMHDKGIQSSIRHDLQAFKDRDPACLSYSSAILHLKGYHALQAYRVAHKLWNEGRKLL 155
Query: 161 XXXXQSRVAEVFAVDIHPAAAIGKGVLLDHATGVVIGETAVIGDNVSILHHVTLGGTGKA 220
QSR++EVF +DIHPAA IG+G+LLDH TGVVIGETAVIG+ VSILH VTLGGTGK
Sbjct: 156 ALALQSRISEVFGIDIHPAARIGEGILLDHGTGVVIGETAVIGNGVSILHGVTLGGTGKE 215
Query: 221 VGDRHPKIGDGVLIGAGATILGNVRIGAGAKIGAGSLVLIDVPPRTTAVGNPARLLGGKK 280
GDRHPKIG+G L+GA TILGN+ IGAGA + AGSLVL DVP + GNPA+L+ +
Sbjct: 216 TGDRHPKIGEGALLGACVTILGNISIGAGAMVAAGSLVLKDVPSHSVVAGNPAKLIRVME 275
Query: 281 GDDMPGESMDH 291
D P +M H
Sbjct: 276 EQD-PSLAMKH 285
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.137 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,123,870
Number of extensions: 244029
Number of successful extensions: 1024
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1010
Number of HSP's successfully gapped: 5
Length of query: 303
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 205
Effective length of database: 8,419,801
Effective search space: 1726059205
Effective search space used: 1726059205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)