BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0131100 Os03g0131100|AK100046
(942 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0131100 Plant regulator RWP-RK domain containing protein 1787 0.0
Os01g0236700 Plant regulator RWP-RK domain containing protein 432 e-121
Os04g0495800 Similar to NIN-like protein 2 (Fragment) 308 2e-83
Os11g0264300 Plant regulator RWP-RK domain containing protein 238 1e-62
Os09g0549450 Hypothetical protein 190 5e-48
Os11g0615400 119 2e-26
>Os03g0131100 Plant regulator RWP-RK domain containing protein
Length = 942
Score = 1787 bits (4629), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 873/904 (96%), Positives = 873/904 (96%)
Query: 39 MEEFLLATPGFDLSEFWHPGAASPFSPLFDIGSSVTTLTTPAPAAGEDDRDEAEMPSRGG 98
MEEFLLATPGFDLSEFWHPGAASPFSPLFDIGSSVTTLTTPAPAAGEDDRDEAEMPSRGG
Sbjct: 39 MEEFLLATPGFDLSEFWHPGAASPFSPLFDIGSSVTTLTTPAPAAGEDDRDEAEMPSRGG 98
Query: 99 GGLEVSPAHRGWTFQTAPQEVAVEPTVKERLRRALERIXXXXXXXXXRGDGELLVQVWVP 158
GGLEVSPAHRGWTFQTAPQEVAVEPTVKERLRRALERI RGDGELLVQVWVP
Sbjct: 99 GGLEVSPAHRGWTFQTAPQEVAVEPTVKERLRRALERIASQSQSQAQRGDGELLVQVWVP 158
Query: 159 TRIGDRQVLTTCGQPFWLDRRNQRLANYRTVSMKYQFSADESARADLGLPGRVFVGRVPE 218
TRIGDRQVLTTCGQPFWLDRRNQRLANYRTVSMKYQFSADESARADLGLPGRVFVGRVPE
Sbjct: 159 TRIGDRQVLTTCGQPFWLDRRNQRLANYRTVSMKYQFSADESARADLGLPGRVFVGRVPE 218
Query: 219 WTPDVRYFSTEEYPRVQHAQYFDIRGSVALPVFEPRSRACLGVVELVMTTQKVNYSAEIE 278
WTPDVRYFSTEEYPRVQHAQYFDIRGSVALPVFEPRSRACLGVVELVMTTQKVNYSAEIE
Sbjct: 219 WTPDVRYFSTEEYPRVQHAQYFDIRGSVALPVFEPRSRACLGVVELVMTTQKVNYSAEIE 278
Query: 279 NICNALKEVDLRSSDVSSDPRSKVVDASYRAIIPEIMDVLRAVCDTHNLPLAQTWIPCIC 338
NICNALKEVDLRSSDVSSDPRSKVVDASYRAIIPEIMDVLRAVCDTHNLPLAQTWIPCIC
Sbjct: 279 NICNALKEVDLRSSDVSSDPRSKVVDASYRAIIPEIMDVLRAVCDTHNLPLAQTWIPCIC 338
Query: 339 QAKRGSRHSDESYKHCVSTVDEACYVRDCSVLGFHQACSEHHLFRGEGVVGRAFGTNEPC 398
QAKRGSRHSDESYKHCVSTVDEACYVRDCSVLGFHQACSEHHLFRGEGVVGRAFGTNEPC
Sbjct: 339 QAKRGSRHSDESYKHCVSTVDEACYVRDCSVLGFHQACSEHHLFRGEGVVGRAFGTNEPC 398
Query: 399 FSPDITTYSKTQYPLSHHAKLFGLRAAVAIQLRSVKTGSLDFVLEFFLPMKCINTEEQRA 458
FSPDITTYSKTQYPLSHHAKLFGLRAAVAIQLRSVKTGSLDFVLEFFLPMKCINTEEQRA
Sbjct: 399 FSPDITTYSKTQYPLSHHAKLFGLRAAVAIQLRSVKTGSLDFVLEFFLPMKCINTEEQRA 458
Query: 459 MLNSLSNTIQQVCYTLRVVKPKELVNDGPFEISQPTRPEFYAKSVHEDLDELCSGINVPG 518
MLNSLSNTIQQVCYTLRVVKPKELVNDGPFEISQPTRPEFYAKSVHEDLDELCSGINVPG
Sbjct: 459 MLNSLSNTIQQVCYTLRVVKPKELVNDGPFEISQPTRPEFYAKSVHEDLDELCSGINVPG 518
Query: 519 RTTSLEASEEVSSWIASLVDAQNKGGKGEIDVDLPFGFSKQDDEGFSVTAGWHTSPVMAP 578
RTTSLEASEEVSSWIASLVDAQNKGGKGEIDVDLPFGFSKQDDEGFSVTAGWHTSPVMAP
Sbjct: 519 RTTSLEASEEVSSWIASLVDAQNKGGKGEIDVDLPFGFSKQDDEGFSVTAGWHTSPVMAP 578
Query: 579 DGSMFSGFKRHEDYDVKENTCSSDPSNSNSDKAVEKRRTKTEKTVSLQDLRKHFAGSLKE 638
DGSMFSGFKRHEDYDVKENTCSSDPSNSNSDKAVEKRRTKTEKTVSLQDLRKHFAGSLKE
Sbjct: 579 DGSMFSGFKRHEDYDVKENTCSSDPSNSNSDKAVEKRRTKTEKTVSLQDLRKHFAGSLKE 638
Query: 639 AAKNLGVCPTTLKRICRQHGINRWPSRKIKKVGHSLKKLQMVIDSVHGPEGTVQLSSLYE 698
AAKNLGVCPTTLKRICRQHGINRWPSRKIKKVGHSLKKLQMVIDSVHGPEGTVQLSSLYE
Sbjct: 639 AAKNLGVCPTTLKRICRQHGINRWPSRKIKKVGHSLKKLQMVIDSVHGPEGTVQLSSLYE 698
Query: 699 NFTKTTWSERELQGDVHFPASEQNFQLEPSVPDRPCEGRFTSHTXXXXXXXXXXXXXXXX 758
NFTKTTWSERELQGDVHFPASEQNFQLEPSVPDRPCEGRFTSHT
Sbjct: 699 NFTKTTWSERELQGDVHFPASEQNFQLEPSVPDRPCEGRFTSHTSGSNSISPSCSQSSNS 758
Query: 759 XXXXXXVPKTQQQHGSAPQLAVKEEISMDENQCSTLIKSASHAEAELQMFVEERPTMLFR 818
VPKTQQQHGSAPQLAVKEEISMDENQCSTLIKSASHAEAELQMFVEERPTMLFR
Sbjct: 759 SLGCSSVPKTQQQHGSAPQLAVKEEISMDENQCSTLIKSASHAEAELQMFVEERPTMLFR 818
Query: 819 SQSQVLLSEHKPIENMSNVQKARSDSLKIKAIYGEERCIFRLQPSWGFQRLKEEIVKRFG 878
SQSQVLLSEHKPIENMSNVQKARSDSLKIKAIYGEERCIFRLQPSWGFQRLKEEIVKRFG
Sbjct: 819 SQSQVLLSEHKPIENMSNVQKARSDSLKIKAIYGEERCIFRLQPSWGFQRLKEEIVKRFG 878
Query: 879 ISQDTHVDLKYLDDESEWVLLTCDADLLECIDVYKSSSNQTVRILVNPSIQPLLNASFGQ 938
ISQDTHVDLKYLDDESEWVLLTCDADLLECIDVYKSSSNQTVRILVNPSIQPLLNASFGQ
Sbjct: 879 ISQDTHVDLKYLDDESEWVLLTCDADLLECIDVYKSSSNQTVRILVNPSIQPLLNASFGQ 938
Query: 939 TGLS 942
TGLS
Sbjct: 939 TGLS 942
>Os01g0236700 Plant regulator RWP-RK domain containing protein
Length = 938
Score = 432 bits (1111), Expect = e-121, Method: Compositional matrix adjust.
Identities = 242/583 (41%), Positives = 342/583 (58%), Gaps = 58/583 (9%)
Query: 126 KERLRRALERIXXXXXXXXXRGDGELLVQVWVPTRIGDRQVLTTCGQPFWLDRRNQRLAN 185
KERL +AL D LLVQVW P + GDR VLTT GQPF LD+++ L
Sbjct: 136 KERLTQALRYFKEST-------DQHLLVQVWAPVKSGDRYVLTTSGQPFVLDQQSIGLLQ 188
Query: 186 YRTVSMKYQFSADESARADLGLPGRVFVGRVPEWTPDVRYFSTEEYPRVQHAQYFDIRGS 245
YR VSM Y FS D +LGLPGRV+ +VPEWTP+V+Y+S+ EYPR+ HA +++ G+
Sbjct: 189 YRAVSMMYMFSVDGENAGELGLPGRVYKQKVPEWTPNVQYYSSTEYPRLNHAISYNVHGT 248
Query: 246 VALPVFEPRSRACLGVVELVMTTQKVNYSAEIENICNALKEVDLRSSDVSSDPRSKVVDA 305
VALPVF+P + C+ VVEL+MT++K+NY+ E++ +C AL+ V+L+S+++ P ++ +
Sbjct: 249 VALPVFDPSVQNCIAVVELIMTSKKINYAGEVDKVCKALEAVNLKSTEILDHPNVQICNE 308
Query: 306 SYRAIIPEIMDVLRAVCDTHNLPLAQTWIPC----ICQAKRGSRHSDESYKH------CV 355
++ + EI+++L VC+ H LPLAQTW+PC + G + S S+ C+
Sbjct: 309 GRQSALVEILEILTVVCEEHKLPLAQTWVPCKYRSVLAHGGGVKKSCLSFDGSCMGEVCM 368
Query: 356 STVDEACYVRDCSVLGFHQACSEHHLFRGEGVVGRAFGTNEPCFSPDITTYSKTQYPLSH 415
ST D A +V D + GF AC EHHL +G+GV G+AF PCFS DI+ + K +YPL H
Sbjct: 369 STSDVAFHVIDAHMWGFRDACVEHHLQKGQGVSGKAFIYRRPCFSKDISQFCKLEYPLVH 428
Query: 416 HAKLFGLRAAVAIQLRSVKTGSLDFVLEFFLPMKCINTEEQRAMLNSLSNTIQQVCYTLR 475
+A++FGL AI L+S+ TG D++LEFFLP C N ++Q A+L S+ +++ TL+
Sbjct: 429 YARMFGLAGCFAICLQSMYTGDDDYILEFFLPPNCRNEDDQNALLESILARMKKCLRTLK 488
Query: 476 VVKPKELVNDGPFEISQP--TRPEFYAKSVHEDLDELCSGINVPGRTTSLEASEEVSSWI 533
VV + N+ +IS E +VH + E C E+ E S
Sbjct: 489 VVGNGD-TNEVCLQISNVLIIETEDLKTNVHFENSEGC----------FRESPESNGSQR 537
Query: 534 ASLVDAQNKGGKGEIDVDLPFGFSKQDDEGFSVTAGWHTSPVMAPDGSMFSGFKRHEDYD 593
VD N G K S+ + H ++A D S +G
Sbjct: 538 VHEVD--NDGNK------------------VSIMSERH---LLADDNSQNNGASVG---- 570
Query: 594 VKENTCSSDPSNSNSDKAVEKRRTKTEKTVSLQDLRKHFAGSLKEAAKNLGVCPTTLKRI 653
+ N + S S+K E+RR K EKT+SL L+++F+GSLK AAK+LGVCPTT+KRI
Sbjct: 571 -RPNGSGASDSLHKSNKPPERRRGKAEKTISLDVLQQYFSGSLKNAAKSLGVCPTTMKRI 629
Query: 654 CRQHGINRWPSRKIKKVGHSLKKLQMVIDSVHGPEGTVQLSSL 696
CRQHGI+RWPSRKI KV SL KL+ VI+SV G + L+S+
Sbjct: 630 CRQHGISRWPSRKINKVNRSLSKLKQVIESVQGSDAAFNLTSI 672
>Os04g0495800 Similar to NIN-like protein 2 (Fragment)
Length = 936
Score = 308 bits (788), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 172/403 (42%), Positives = 241/403 (59%), Gaps = 24/403 (5%)
Query: 90 EAEMPSRGGGGLEVSP-AHRGWTFQTAPQEVAVEPTVKERLRRALERIXXXXXXXXXRGD 148
EAE + G L AH+G + P+ V V ++ +R+ AL G
Sbjct: 106 EAEKTGKSSGELGSDDGAHQGSSM--VPRSV-VGSSLADRMLMALSLFRESL------GS 156
Query: 149 GELLVQVWVPTRIGDRQVLTTCGQPFWLDRRNQRLANYRTVSMKYQFSADESARADLGLP 208
G L QVW+P VL+TC QPF LD Q LA YR VS + FSA E GLP
Sbjct: 157 GAL-AQVWMPVEQEGHVVLSTCEQPFLLD---QVLAGYREVSRHFVFSAKEEPGLQPGLP 212
Query: 209 GRVFVGRVPEWTPDVRYFSTEEYPRVQHAQYFDIRGSVALPVFEPRSRACLGVVELVMTT 268
GRVF+ VPEWT V Y++ EY R++HA + +IRGS+A+P+++P +C V ELV
Sbjct: 213 GRVFISGVPEWTSSVLYYNRPEYLRMEHALHHEIRGSLAMPIYDPSKDSCCAVFELVTRK 272
Query: 269 QKVNYSAEIENICNALKEVDLRSSDVSSDPRSKVVDASYRAIIPEIMDVLRAVCDTHNLP 328
+K ++SAE++N+CNAL+ ++L+++ SS+ K + + EI+DVLRA+C H LP
Sbjct: 273 EKPDFSAEMDNVCNALQAMNLKATKGSSN--QKFYTENQKFAFTEILDVLRAICHAHMLP 330
Query: 329 LAQTWIPC-------ICQAKRGSRHSDESYKHCVSTVDEACYVRDCSVLGFHQACSEHHL 381
LA TW+P K G+ S +S K + + ACYV D + GF QAC+ HL
Sbjct: 331 LALTWVPTSNGIDGGYVVGKDGASFS-QSGKTIIRIHESACYVNDGKMQGFLQACARRHL 389
Query: 382 FRGEGVVGRAFGTNEPCFSPDITTYSKTQYPLSHHAKLFGLRAAVAIQLRSVKTGSLDFV 441
+G+G+ GRA +N P FSPDI YS YPL+HHA+ F L AAVAI+LRS TG+ D++
Sbjct: 390 EKGQGIAGRALKSNLPFFSPDIREYSIEDYPLAHHARKFSLHAAVAIRLRSTYTGNDDYI 449
Query: 442 LEFFLPMKCINTEEQRAMLNSLSNTIQQVCYTLRVVKPKELVN 484
LEFFLP+ C + EQ+ +LN+LS+T+Q++C +LR V E+ N
Sbjct: 450 LEFFLPVSCKGSGEQQMLLNNLSSTMQRICKSLRTVYEAEVDN 492
Score = 120 bits (302), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 55/81 (67%), Positives = 68/81 (83%)
Query: 612 VEKRRTKTEKTVSLQDLRKHFAGSLKEAAKNLGVCPTTLKRICRQHGINRWPSRKIKKVG 671
EK+R+ EK +SL LRK+F+GSLK+AAK+LGVCPTTLKRICR HGI+RWPSRKI KV
Sbjct: 557 AEKKRSTAEKNISLDVLRKYFSGSLKDAAKSLGVCPTTLKRICRHHGISRWPSRKINKVN 616
Query: 672 HSLKKLQMVIDSVHGPEGTVQ 692
SLKK+Q VI+SVHG + ++Q
Sbjct: 617 RSLKKIQTVINSVHGVDRSLQ 637
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 835 SNVQKARSDSLKIKAIYGEERCIFRLQPSWGFQRLKEEIVKRFGISQDTHVDLKYLDDES 894
S ++ A S +L +KA Y + F+ PS G+ L EEI KRF + + LKY DDE
Sbjct: 825 SALKDAASPALTVKATYNGDTVRFKFLPSMGWYHLLEEIAKRFKLPTGAY-QLKYKDDED 883
Query: 895 EWVLLTCDADLLECIDVYKSSSNQTVRILV 924
EWV+L D+DL EC+DV S ++ V++ V
Sbjct: 884 EWVILANDSDLQECVDVLDSIGSRIVKLQV 913
>Os11g0264300 Plant regulator RWP-RK domain containing protein
Length = 392
Score = 238 bits (607), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 155/392 (39%), Positives = 206/392 (52%), Gaps = 77/392 (19%)
Query: 313 EIMDVLRAVCDTHNLPLAQTWIPCICQ-----------AKRGSRHSDESYKHCVSTVDEA 361
EI DVL+AVC H LPLA WIP +C A G R+ K + + A
Sbjct: 2 EIFDVLQAVCQAHLLPLALAWIP-VCSKRDVLVSVEYGANFGKRN-----KEVLCIEESA 55
Query: 362 CYVRDCSVLGFHQACSEHHLFRGEGVVGRAFGTNEPCFSPDITTYSKTQYPLSHHAKLFG 421
CYV D + F Q C+EH L +G+GV G A+ +N P FS D+ Y YPL +HA+ FG
Sbjct: 56 CYVNDTRMRDFVQVCAEHPLEKGQGVAGNAYLSNNPFFSSDVKDYDMHAYPLVNHARKFG 115
Query: 422 LRAAVAIQLRSVKTGSLDFVLEFFLPMKCINTEEQRAMLNSLSNTIQQVCYTLRVVKPKE 481
L AAVAI+L+S T + D+VLEFFLP+ C EQ+ +L+S+S T+++VC +LR V E
Sbjct: 116 LHAAVAIRLQSTYTKNDDYVLEFFLPVLCKGGGEQQLLLDSISATMRRVCKSLRTVSDAE 175
Query: 482 LVNDGPFEISQPTRPEFYAKSVHEDLDELCSGINVPGRTTSLEASEEVSSWIASLVDAQN 541
L D + S R SG P + + E +D N
Sbjct: 176 LKEDVTRKPSNENR----------------SGTRCPSPVNLIYSGRE--------IDVSN 211
Query: 542 KGGKGEIDVDLPFGFSKQD-DEGFSVTAGWHTSPVMAPDGSMFSGFKRHEDYDVKENTCS 600
E + P + + DE S T + K CS
Sbjct: 212 -----ETKTNTPLEYQIEGIDEQLSDTKSTN-----------------------KLIKCS 243
Query: 601 SDPSNSNSDKAVEKRRTKTEKTVSLQDLRKHFAGSLKEAAKNLGVCPTTLKRICRQHGIN 660
N+ ++R + TEK+VSL L+++F+GSLK+AAK++GVCPTTLKRICRQHGI+
Sbjct: 244 ------NASDGEKRR-SSTEKSVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGIS 296
Query: 661 RWPSRKIKKVGHSLKKLQMVIDSVHGPEGTVQ 692
RWPSRKIKKV SLKK+Q VI SVHG EG ++
Sbjct: 297 RWPSRKIKKVNRSLKKIQNVISSVHGVEGVLK 328
>Os09g0549450 Hypothetical protein
Length = 241
Score = 190 bits (482), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 90/183 (49%), Positives = 126/183 (68%), Gaps = 12/183 (6%)
Query: 104 SPAHRGWTFQTAPQEVAVEPTVKERLRRALERIXXXXXXXXXRGDGELLVQVWVPTRIGD 163
+PA+ W Q +V+ER +AL I + D ++LVQ+WVP + D
Sbjct: 69 TPANSWWI-----QPSGASTSVRERFDQALAYIRET------QSDADVLVQLWVPVKGND 117
Query: 164 RQ-VLTTCGQPFWLDRRNQRLANYRTVSMKYQFSADESARADLGLPGRVFVGRVPEWTPD 222
Q VLTT GQPF LD+R+ L +R VS KYQFSAD ++ + GLPGRVF+GR+PEW+PD
Sbjct: 118 GQLVLTTSGQPFTLDQRSNSLIQFREVSTKYQFSADVASGSSPGLPGRVFIGRLPEWSPD 177
Query: 223 VRYFSTEEYPRVQHAQYFDIRGSVALPVFEPRSRACLGVVELVMTTQKVNYSAEIENICN 282
VRYF++ EYPR+ HAQY D+ G++ LPVFE + +CLGV+EL+MT QK+N+++E+ IC+
Sbjct: 178 VRYFTSYEYPRINHAQYLDVHGTMGLPVFERGNYSCLGVIELIMTKQKLNFTSELNTICS 237
Query: 283 ALK 285
AL+
Sbjct: 238 ALQ 240
>Os11g0615400
Length = 153
Score = 119 bits (297), Expect = 2e-26, Method: Composition-based stats.
Identities = 63/143 (44%), Positives = 88/143 (61%), Gaps = 2/143 (1%)
Query: 152 LVQVWVPTRIGDRQVLTTCGQPFWLDRRNQRLANYRTVSMKYQFSADESARAD-LGLPGR 210
+VQVW P R G R+VL T GQPF L + RL YRTVS+ F +A AD GLP R
Sbjct: 1 MVQVWAPVRDGARRVLATRGQPFVLASQCHRLFQYRTVSLTCVFPVGGAAAADKQGLPAR 60
Query: 211 VFVGRVPEWTPDVRYFSTEEYPRVQHAQYFDIRGSVALPVFEP-RSRACLGVVELVMTTQ 269
F EWTP+V+ + + EY R+ +A +DI+GS+ LP+ +P + + L V+ELV T
Sbjct: 61 AFDTGTLEWTPNVQCYGSGEYARISYALIYDIQGSLFLPILDPDDASSPLAVLELVSTAL 120
Query: 270 KVNYSAEIENICNALKEVDLRSS 292
++ S E+ N+CNAL+ + L S
Sbjct: 121 RLRGSGEVTNLCNALQAISLSLS 143
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.132 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 30,839,343
Number of extensions: 1318466
Number of successful extensions: 3627
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 3612
Number of HSP's successfully gapped: 10
Length of query: 942
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 832
Effective length of database: 11,292,261
Effective search space: 9395161152
Effective search space used: 9395161152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 161 (66.6 bits)