BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0130500 Os03g0130500|AK069816
(1068 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0130500 EPS15 homology (EH) domain containing protein 1840 0.0
Os06g0728600 EPS15 homology (EH) domain containing protein 389 e-108
Os04g0669300 Dynamin family protein 72 3e-12
Os06g0687800 Similar to Pincher (EH-domain containing 4) 70 6e-12
>Os03g0130500 EPS15 homology (EH) domain containing protein
Length = 1068
Score = 1840 bits (4765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 925/1068 (86%), Positives = 925/1068 (86%)
Query: 1 MAGMEAFEAYFRRADLNQDGRISGQEAVAFFQGANLPQQVLAQVWMHADKNKTGFLGRPE 60
MAGMEAFEAYFRRADLNQDGRISGQEAVAFFQGANLPQQVLAQVWMHADKNKTGFLGRPE
Sbjct: 1 MAGMEAFEAYFRRADLNQDGRISGQEAVAFFQGANLPQQVLAQVWMHADKNKTGFLGRPE 60
Query: 61 FFNALRLVTVAQSGRQLTPDIVQSALYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVN 120
FFNALRLVTVAQSGRQLTPDIVQSALY VN
Sbjct: 61 FFNALRLVTVAQSGRQLTPDIVQSALYGPAAARIPAPKIAGGGQAPPQMAAAGAPRPQVN 120
Query: 121 AAVSXXXXXXXXXXXXMNVAGAPRPQGSGMMPGSAQIGGSQQVNAGAVPRPQGVNSMMPA 180
AAVS MNVAGAPRPQGSGMMPGSAQIGGSQQVNAGAVPRPQGVNSMMPA
Sbjct: 121 AAVSPAPGQAGAPQPQMNVAGAPRPQGSGMMPGSAQIGGSQQVNAGAVPRPQGVNSMMPA 180
Query: 181 ASQGGALQPTQFATQRGMQSQPPSMGFNQQPPPSSTGFMRPTQPGAPAASLQGQGPGINQ 240
ASQGGALQPTQFATQRGMQSQPPSMGFNQQPPPSSTGFMRPTQPGAPAASLQGQGPGINQ
Sbjct: 181 ASQGGALQPTQFATQRGMQSQPPSMGFNQQPPPSSTGFMRPTQPGAPAASLQGQGPGINQ 240
Query: 241 VPLGGGSMGAPAXXXXXXXXXXXXLXXXXXXXXXXXXXXXXXFGLTLSSTMGMAPGQQAQ 300
VPLGGGSMGAPA L FGLTLSSTMGMAPGQQAQ
Sbjct: 241 VPLGGGSMGAPAGWRGGNVGSVGGLPQATPGATAPQQATPGGFGLTLSSTMGMAPGQQAQ 300
Query: 301 GTPPSSMPPQSNSAVSAQDSKALVXXXXXXXXXXXXXXDIFSALTQPKSNVSTLSFPTSM 360
GTPPSSMPPQSNSAVSAQDSKALV DIFSALTQPKSNVSTLSFPTSM
Sbjct: 301 GTPPSSMPPQSNSAVSAQDSKALVLSGNGSASGLGASNDIFSALTQPKSNVSTLSFPTSM 360
Query: 361 APNSSSFMSTPSGSQNLSNLAQFGSQQGIPTVSSGGSQPQQTHPITKPSVPAPTXXXXXX 420
APNSSSFMSTPSGSQNLSNLAQFGSQQGIPTVSSGGSQPQQTHPITKPSVPAPT
Sbjct: 361 APNSSSFMSTPSGSQNLSNLAQFGSQQGIPTVSSGGSQPQQTHPITKPSVPAPTVSGVSA 420
Query: 421 XXXXXXXQWPKVTQSDIQKYTKVFADVDRDRDGKITGAEARTLFLSWRLPREILKQVWDL 480
QWPKVTQSDIQKYTKVFADVDRDRDGKITGAEARTLFLSWRLPREILKQVWDL
Sbjct: 421 GVSNSASQWPKVTQSDIQKYTKVFADVDRDRDGKITGAEARTLFLSWRLPREILKQVWDL 480
Query: 481 SDQDNDGMLSLREFCIALYLMERHRAGTPLPPALPDSLKYDEVLLRATGLPSTAYNGPSW 540
SDQDNDGMLSLREFCIALYLMERHRAGTPLPPALPDSLKYDEVLLRATGLPSTAYNGPSW
Sbjct: 481 SDQDNDGMLSLREFCIALYLMERHRAGTPLPPALPDSLKYDEVLLRATGLPSTAYNGPSW 540
Query: 541 QQNQGLPHKGPGAAGMPATGVRQPLPPHLQAQMDGANRPGQPRPHMPGMDNHAAPQANKD 600
QQNQGLPHKGPGAAGMPATGVRQPLPPHLQAQMDGANRPGQPRPHMPGMDNHAAPQANKD
Sbjct: 541 QQNQGLPHKGPGAAGMPATGVRQPLPPHLQAQMDGANRPGQPRPHMPGMDNHAAPQANKD 600
Query: 601 DGSGANSAVQEDAPKKVEVEKQVLDSREKLEYYRTKMQDLVLYKSRCDNRLNEITERASS 660
DGSGANSAVQEDAPKKVEVEKQVLDSREKLEYYRTKMQDLVLYKSRCDNRLNEITERASS
Sbjct: 601 DGSGANSAVQEDAPKKVEVEKQVLDSREKLEYYRTKMQDLVLYKSRCDNRLNEITERASS 660
Query: 661 DKREVESLAKKYEEKYKQVAELASKLAVEEHAFRDVQERKVELHDALVKMVQGGSVDGLL 720
DKREVESLAKKYEEKYKQVAELASKLAVEEHAFRDVQERKVELHDALVKMVQGGSVDGLL
Sbjct: 661 DKREVESLAKKYEEKYKQVAELASKLAVEEHAFRDVQERKVELHDALVKMVQGGSVDGLL 720
Query: 721 QVRADRIQYQLEEMEKAFSERCKHFGLQFKPSASVELPFGWEPGKQEGAIXXXXXXXXXX 780
QVRADRIQYQLEEMEKAFSERCKHFGLQFKPSASVELPFGWEPGKQEGAI
Sbjct: 721 QVRADRIQYQLEEMEKAFSERCKHFGLQFKPSASVELPFGWEPGKQEGAIEWDEDWDKFE 780
Query: 781 XXXXXXVKDNGTIVENPVASENVKVPSLWNDMDESPVASSNGHIKAERHYRAGDHAAESD 840
VKDNGTIVENPVASENVKVPSLWNDMDESPVASSNGHIKAERHYRAGDHAAESD
Sbjct: 781 DEGFGFVKDNGTIVENPVASENVKVPSLWNDMDESPVASSNGHIKAERHYRAGDHAAESD 840
Query: 841 LGYDFGEESVXXXXXXXXXXXXXXFVSSNFAMHDSSPSKKETYSDHGGSESIFGDKYADE 900
LGYDFGEESV FVSSNFAMHDSSPSKKETYSDHGGSESIFGDKYADE
Sbjct: 841 LGYDFGEESVRSPSSAGRSASGSPFVSSNFAMHDSSPSKKETYSDHGGSESIFGDKYADE 900
Query: 901 TSWNFDDQDTESVWGSNAMNNESDHHGSAHNSFFGSDDFGVNPVRVGSPSGASTYGKXXX 960
TSWNFDDQDTESVWGSNAMNNESDHHGSAHNSFFGSDDFGVNPVRVGSPSGASTYGK
Sbjct: 901 TSWNFDDQDTESVWGSNAMNNESDHHGSAHNSFFGSDDFGVNPVRVGSPSGASTYGKKKS 960
Query: 961 XXXXXXXXXXXAYTSGFSPKFSESRDDSSSYNLGRFDSFRSQESGFFPQESRFSRFDSIN 1020
AYTSGFSPKFSESRDDSSSYNLGRFDSFRSQESGFFPQESRFSRFDSIN
Sbjct: 961 SFFDDSVPSSPAYTSGFSPKFSESRDDSSSYNLGRFDSFRSQESGFFPQESRFSRFDSIN 1020
Query: 1021 NSKGENVTGFDSPKSSTNFGRFDSFDDADPFGSSGPFKASGSRSPPKF 1068
NSKGENVTGFDSPKSSTNFGRFDSFDDADPFGSSGPFKASGSRSPPKF
Sbjct: 1021 NSKGENVTGFDSPKSSTNFGRFDSFDDADPFGSSGPFKASGSRSPPKF 1068
>Os06g0728600 EPS15 homology (EH) domain containing protein
Length = 1188
Score = 389 bits (999), Expect = e-108, Method: Compositional matrix adjust.
Identities = 259/686 (37%), Positives = 381/686 (55%), Gaps = 38/686 (5%)
Query: 302 TPPSSMPPQSNSA--------VSAQDSKALVXXXXXXXXXXXXXXDIFSALTQPKSNVST 353
TP S+ ++NSA +A DSKALV D F+A Q K + S+
Sbjct: 236 TPASTTSVKANSADLNLLSSPPAANDSKALVPLGNGLSSASTFGVDPFAATPQAKQDSSS 295
Query: 354 LSFPTSMAPNSSSFMSTPSGSQNLSNLAQFGSQQGIPTVSSGGSQPQQTHPITKPSVPAP 413
++ P S++ + +G + Q G QG+ ++ S + P+Q + PS PAP
Sbjct: 296 PPVVSNSLP-SANALGPSAGPHHPPKPLQTGPMQGVASLPSQPA-PKQNQFNSMPSAPAP 353
Query: 414 TXXXXXXXXXXXXXQ----WPKVTQSDIQKYTKVFADVDRDRDGKITGAEARTLFLSWRL 469
Q WPK+TQ+D++KY VF VDRDRDGKITG EAR LFLSWRL
Sbjct: 354 MGSFPGGQIPSNTNQSQAPWPKITQADVRKYMIVFIKVDRDRDGKITGEEARNLFLSWRL 413
Query: 470 PREILKQVWDLSDQDNDGMLSLREFCIALYLMERHRAGTPLPPALPDSLKYDEVLLRATG 529
PRE+L++VWDLSDQD DGMLS REFC A+YLMERHR PLP LPD + + + L +TG
Sbjct: 414 PRELLRKVWDLSDQDKDGMLSFREFCTAVYLMERHREQRPLPDVLPDGIWAEGISLPSTG 473
Query: 530 LPSTAYNGPSWQQNQGLPHKG-PGAA-GMPATGVRQPLPPHLQAQMDGANRPGQPRPHMP 587
+ GP+ + G + PG GMP + ++ P L D A R + +P +P
Sbjct: 474 QFAENPTGPAPHPSAGFTSRAMPGQHHGMPPSSMKPPPQRPLSLDADDAVRTEKQKPKIP 533
Query: 588 GMDNHAAPQANKDDGSGANSAVQE--DAPKKV-EVEKQVLDSREKLEYYRTKMQDLVLYK 644
++ H Q +K++ S ++ +E DA KKV E+EK++LDSREK E+YRTKMQ+L+LYK
Sbjct: 534 VLEEHLTGQLSKEERSALDAKFKEASDADKKVQELEKEILDSREKTEFYRTKMQELILYK 593
Query: 645 SRCDNRLNEITERASSDKREVESLAKKYEEKYKQVAELASKLAVEEHAFRDVQERKVELH 704
SRCDNR NE++ER S+DKREV+SLA KY+E+ K+V ++ASKL+++E FR++QE+K+E++
Sbjct: 594 SRCDNRFNEVSERMSADKREVQSLAAKYDERCKKVGDVASKLSMDEATFREIQEKKLEIY 653
Query: 705 DALVKMVQGGSVDGLLQVRADRIQYQLEEMEKAFSERCKHFGLQFKPSASVELPFGWEPG 764
+A+VK+ +G D LQ RA++IQ LEE+ K+ +E+CK +GL+ KP+ VELPFGW+PG
Sbjct: 654 NAIVKLQKGDGNDEKLQERANQIQSDLEELVKSLNEQCKRYGLRAKPTTLVELPFGWQPG 713
Query: 765 KQEGAIXXXXXXXXXXXXXXXXVKDNGTIVENPVASEN---VKVPSLWNDMDESPVASSN 821
QE A +K+ +E PV ++ V+ + + +P ++
Sbjct: 714 IQETAAVWDEEWDKFGDDGFSTIKELTVEMEPPVVQKDQPTVEDSKVSTNGPSAPTSTEK 773
Query: 822 GHIKAERHYRAGDHAAESDLGYDFGEESVXXXXXXXXXXXXXXFVSSNF-----AMHDSS 876
+ ++ A + E D + S +D+S
Sbjct: 774 EDSRGDKSAAASEQTVEPDATPSDSKTVAAKSPPVSPVKNTKDGHSDERDKKQSGTNDTS 833
Query: 877 PSKKETYSDHGGSES-IFGDKYADETSW--NFDD-QDTESVWGSNAMNNESDHHGSAHNS 932
E+ S++GG++S + G+K D W +FD+ D +S+W N + E+ +
Sbjct: 834 SRAIESVSNNGGADSPVHGEKRDDSHYWGPSFDNGDDNDSLWNFNRKDGENGD----SDL 889
Query: 933 FFGSDDFGVNPVRVGSPSGA-STYGK 957
FFG G+ P+R G S A S YGK
Sbjct: 890 FFGPQ--GLPPIRTGGSSTAGSVYGK 913
Score = 142 bits (359), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 64/82 (78%), Positives = 76/82 (92%)
Query: 6 AFEAYFRRADLNQDGRISGQEAVAFFQGANLPQQVLAQVWMHADKNKTGFLGRPEFFNAL 65
AF+AYFR ADL++DGRISGQEAVAFF+ + LPQ VLAQ+W +ADKN+TGFLGR +F+NAL
Sbjct: 4 AFDAYFRAADLDRDGRISGQEAVAFFKASALPQPVLAQIWTYADKNRTGFLGREDFYNAL 63
Query: 66 RLVTVAQSGRQLTPDIVQSALY 87
RLVTVAQSGR+LTPDIV+SALY
Sbjct: 64 RLVTVAQSGRELTPDIVRSALY 85
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 73/169 (43%), Gaps = 41/169 (24%)
Query: 939 FGVNPVRVGSPSGASTYGKXXXXXXXXXXXXXXAYTSGFSPKFSESRDDSSSYNLGRFDS 998
F P R SP+ +S YGK Y S FSP++SE+ DDSS + DS
Sbjct: 1012 FDSGPSRAESPTASSIYGKEQRGFFDSSVPSTPMYNSSFSPRYSEAGDDSSFDTFSQMDS 1071
Query: 999 FRSQESGFFPQESRFSRFDSINNSK----------------------GENVTGFDSPKSS 1036
F S F Q FSRFDS ++ G + T +DS SS
Sbjct: 1072 FGMNYSNSFGQRDSFSRFDSFRSNADQGSNDTFGRFDSFRSNADQGGGNSFTRYDSMNSS 1131
Query: 1037 TN------FGRFD------------SFDDADPFGSSGPFKASGSRSPPK 1067
++ F RFD SFD+ DPFG +GPFK+S + SP K
Sbjct: 1132 SDHDRTDAFARFDSMKSTDYNSRGYSFDEDDPFG-TGPFKSSDTSSPTK 1179
>Os04g0669300 Dynamin family protein
Length = 542
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 54/81 (66%)
Query: 5 EAFEAYFRRADLNQDGRISGQEAVAFFQGANLPQQVLAQVWMHADKNKTGFLGRPEFFNA 64
EA+ +F AD + DGR++G++A+ FF +NL + L QVW AD + G+LG EF A
Sbjct: 17 EAYLRWFSLADDDGDGRVTGKDALKFFAMSNLSRPELKQVWAIADSKRQGYLGFSEFMTA 76
Query: 65 LRLVTVAQSGRQLTPDIVQSA 85
++LV++AQ+G +++ D + A
Sbjct: 77 MQLVSLAQAGNEISQDTLAHA 97
>Os06g0687800 Similar to Pincher (EH-domain containing 4)
Length = 544
Score = 70.5 bits (171), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 51/76 (67%)
Query: 5 EAFEAYFRRADLNQDGRISGQEAVAFFQGANLPQQVLAQVWMHADKNKTGFLGRPEFFNA 64
+ ++ +F AD + DGRI+G +A+ FF + LP+ L QVW AD + G+LG EF A
Sbjct: 17 KTYQEWFAFADSDGDGRITGPDAIKFFAMSKLPRADLKQVWAIADSKRQGYLGFSEFVTA 76
Query: 65 LRLVTVAQSGRQLTPD 80
++LV++AQ+G ++T D
Sbjct: 77 MQLVSLAQAGDEITQD 92
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.128 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 35,697,820
Number of extensions: 1592586
Number of successful extensions: 5732
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 5708
Number of HSP's successfully gapped: 6
Length of query: 1068
Length of database: 17,035,801
Length adjustment: 111
Effective length of query: 957
Effective length of database: 11,240,047
Effective search space: 10756724979
Effective search space used: 10756724979
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 161 (66.6 bits)