BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0130300 Os03g0130300|AK120826
(81 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0130300 Similar to Cp-thionin 140 3e-34
Os02g0629800 Similar to Defensin precursor 71 2e-13
Os04g0522100 68 2e-12
Os04g0189400 Gamma Purothionin family protein 67 4e-12
AK072380 65 1e-11
>Os03g0130300 Similar to Cp-thionin
Length = 81
Score = 140 bits (352), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 70/81 (86%), Positives = 70/81 (86%)
Query: 1 MEASRKVFSXXXXXXXXXXXTGEMGGPVMVAEARTCESQSHRFKGPCARKANCASVCNTE 60
MEASRKVFS TGEMGGPVMVAEARTCESQSHRFKGPCARKANCASVCNTE
Sbjct: 1 MEASRKVFSAMLLMVLLLAATGEMGGPVMVAEARTCESQSHRFKGPCARKANCASVCNTE 60
Query: 61 GFPDGYCHGVRRRCMCTKPCP 81
GFPDGYCHGVRRRCMCTKPCP
Sbjct: 61 GFPDGYCHGVRRRCMCTKPCP 81
>Os02g0629800 Similar to Defensin precursor
Length = 80
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/57 (61%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 26 GPVMVAEARTCESQSHRFKGPCARKANCASVCNTEGFPDGYC--HGVRRRCMCTKPC 80
G VAEAR C SQSHRFKG C NCA+VC TE FPDG C HG+ R+C C K C
Sbjct: 24 GTTKVAEARHCLSQSHRFKGMCVSSNNCANVCRTESFPDGECKSHGLERKCFCKKVC 80
>Os04g0522100
Length = 81
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/57 (61%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 26 GPVMVAEARTCESQSHRFKGPCARKANCASVCNTEGFPDGYC--HGVRRRCMCTKPC 80
G VAEAR C SQSHRF G C RK+NC VC TEGFP G C HG+ R+C C K C
Sbjct: 25 GTTRVAEARHCVSQSHRFVGACMRKSNCEHVCMTEGFPWGECRFHGIERKCFCKKRC 81
>Os04g0189400 Gamma Purothionin family protein
Length = 111
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Query: 1 MEASRKVFSXXXXXXXXXXXTGEMGGPVMVAEARTCESQSHRFKGPCARKANCASVCNTE 60
ME SRK F T A+AR CE+ S+ FKG C ANCA+VC TE
Sbjct: 40 METSRKFFPTIVVLLLLVVTTA--------AQARECETPSNEFKGICMMVANCANVCLTE 91
Query: 61 GFPDGYCHGVRRRCMCTKPC 80
GF G C G RRRCMCTK C
Sbjct: 92 GFSGGKCSGFRRRCMCTKDC 111
>AK072380
Length = 72
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 36/50 (72%)
Query: 31 AEARTCESQSHRFKGPCARKANCASVCNTEGFPDGYCHGVRRRCMCTKPC 80
A+AR CE+ S+ FKG C ANCA+VC TEGF G C G RRRCMCTK C
Sbjct: 23 AQARECETPSNEFKGICMMVANCANVCLTEGFSGGKCSGFRRRCMCTKDC 72
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.134 0.459
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,680,237
Number of extensions: 88925
Number of successful extensions: 230
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 7
Length of query: 81
Length of database: 17,035,801
Length adjustment: 51
Effective length of query: 30
Effective length of database: 14,372,887
Effective search space: 431186610
Effective search space used: 431186610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)