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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0629800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Defensin precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.09 (0.0239) R2 : 0.00294
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0584 (0.0504) R2dN8 : 0.0038 R2N8 : 0.00294
σ : 0.451
deviance : 93.31
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
90.51 0.447 3.1 0.0853 0.0906 0.164 0.0875 1.02 0.0516 7.7 69.34 5789 -- --
91.74 0.446 3.1 0.0231 0.106 0.253 0.0884 -- 0.0133 7.62 72 4117 -- --
90.53 0.443 3.1 0.0864 0.0916 0.163 -- 1.01 0.0514 7.34 69.39 5795 -- --
91.69 0.446 3.11 0.0408 0.145 0.298 -- -- -0.0205 6.94 73 4890 -- --
90.97 0.444 3.1 0.0983 -- 0.159 -- 1.02 0.0556 -- 71 5796 -- --
92.81 0.452 3.09 0.0279 0.0933 -- 0.0646 -- 0.0604 7.22 -- -- -- --
92.82 0.451 3.09 0.029 0.0939 -- -- -- 0.0601 6.98 -- -- -- --
92.24 0.447 3.11 0.0625 -- 0.23 -- -- -0.013 -- 73.08 8422 -- --
91.72 0.446 3.11 -- 0.135 0.285 -- -- -0.025 6.72 73.42 4849 -- --
93.28 0.451 3.09 0.0309 -- -- -- -- 0.0619 -- -- -- -- --
92.84 0.451 3.09 -- 0.0943 -- -- -- 0.0569 6.96 -- -- -- --
92.33 0.448 3.11 -- -- 0.219 -- -- -0.0153 -- 73.11 8421 -- --
93.31 0.451 3.09 -- -- -- -- -- 0.0584 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 84.43 humidity 90.0 30 < th dose independent rect. 22 1
2 84.48 atmosphere 1005.0 30 > th dose dependent rect. 22 1
3 84.49 wind 1.0 30 > th dose independent rect. 22 1
4 84.49 wind 9.0 1440 < th dose independent rect. 23 1
5 84.49 temperature 10.0 1440 > th dose independent rect. 23 1
8 84.49 temperature 30.0 1440 < th dose independent rect. 23 1
12 84.49 humidity 50.0 1440 > th dose independent rect. 23 1
22 84.49 atmosphere 995.0 1440 > th dose independent rect. 23 1
23 84.49 radiation 1.0 1440 < th dose independent rect. 23 1
43 84.49 temperature 10.0 1440 > th dose independent rect. 24 23
46 84.49 temperature 10.0 30 > th dose dependent rect. 22 1
49 84.49 radiation 1.0 1440 < th dose dependent rect. 23 1
54 84.50 atmosphere 1005.0 30 > th dose independent rect. 22 1
56 84.51 precipitation 0.1 30 < th dose independent rect. 22 1
57 84.51 precipitation 0.1 30 < th dose dependent rect. 22 1
59 84.53 wind 5.0 30 < th dose independent rect. 22 1
62 84.53 temperature 10.0 30 > th dose independent rect. 22 1
64 84.53 temperature 30.0 30 < th dose independent rect. 22 1
65 84.53 humidity 50.0 30 > th dose independent rect. 22 1
68 84.53 atmosphere 995.0 30 > th dose independent rect. 22 1
69 84.53 atmosphere 1010.0 30 < th dose independent rect. 22 1
71 84.53 radiation 1.0 30 < th dose independent rect. 22 1
76 84.53 temperature 10.0 30 > th dose independent rect. 23 23
77 84.53 radiation 1.0 30 < th dose dependent rect. 22 1
83 84.55 wind 9.0 30 < th dose dependent rect. 22 1
84 84.55 humidity 90.0 30 < th dose dependent rect. 22 1
89 84.60 humidity 50.0 30 > th dose dependent rect. 22 1
95 84.66 wind 1.0 30 > th dose dependent rect. 22 1
98 84.76 atmosphere 1015.0 30 < th dose dependent rect. 22 1
101 84.95 temperature 30.0 30 < th dose dependent rect. 22 1
105 85.20 wind 9.0 30 < th dose independent rect. 23 23
158 86.76 humidity 90.0 10 < th dose dependent rect. 3 3
169 87.27 atmosphere 1005.0 10 > th dose dependent rect. 2 4
172 87.34 radiation 1.0 30 > th dose dependent rect. 16 14
173 87.41 humidity 80.0 10 < th dose independent rect. 5 1
183 87.41 humidity 80.0 10 < th dose independent rect. 1 5
224 87.63 atmosphere 1005.0 10 > th dose dependent rect. 5 1
252 87.93 radiation 1.0 90 > th dose independent rect. 4 1
262 87.93 radiation 1.0 90 > th dose dependent rect. 4 1
274 87.98 temperature 20.0 30 > th dose dependent rect. 2 1
275 87.99 humidity 60.0 30 > th dose independent rect. 16 1
279 88.03 temperature 20.0 30 > th dose independent rect. 2 1
280 88.04 atmosphere 1005.0 30 > th dose independent rect. 2 1
282 88.05 atmosphere 1005.0 30 > th dose dependent rect. 2 1
283 88.06 wind 5.0 30 > th dose dependent rect. 16 1
284 88.07 wind 7.0 30 > th dose independent rect. 16 1
285 88.07 temperature 30.0 30 < th dose independent rect. 16 1
287 88.07 atmosphere 1005.0 30 > th dose independent rect. 16 1
291 88.10 atmosphere 1005.0 30 > th dose dependent rect. 16 1
294 88.12 humidity 50.0 30 > th dose dependent rect. 16 1
299 88.18 wind 3.0 30 < th dose independent rect. 2 1
300 88.19 wind 5.0 30 < th dose dependent rect. 2 1
302 88.20 humidity 80.0 30 > th dose independent rect. 2 1
309 88.23 temperature 10.0 30 > th dose independent rect. 2 1
311 88.23 temperature 30.0 30 < th dose independent rect. 2 1
312 88.23 humidity 50.0 30 > th dose independent rect. 2 1
316 88.23 atmosphere 1010.0 30 < th dose independent rect. 2 1
318 88.23 radiation 1.0 30 < th dose independent rect. 2 1
323 88.23 precipitation 0.1 30 < th dose independent rect. 2 1
324 88.23 temperature 10.0 30 > th dose independent rect. 3 23
325 88.23 humidity 50.0 30 > th dose dependent rect. 2 1
327 88.23 radiation 1.0 30 < th dose dependent rect. 2 1
332 88.23 precipitation 0.1 30 < th dose dependent rect. 2 1
358 88.47 radiation 10.0 10 < th dose independent rect. 16 1
360 88.47 temperature 20.0 90 < th dose dependent rect. 4 1
364 88.51 atmosphere 1015.0 30 < th dose dependent rect. 2 1
369 88.58 wind 1.0 30 > th dose independent rect. 2 1
377 88.63 temperature 30.0 30 < th dose dependent rect. 2 1
389 88.77 temperature 20.0 90 < th dose dependent rect. 3 3
413 88.93 radiation 20.0 30 < th dose dependent rect. 16 1
422 89.01 temperature 30.0 30 < th dose dependent rect. 16 1
432 89.07 humidity 80.0 30 > th dose dependent rect. 11 1
462 89.30 temperature 25.0 720 > th dose dependent rect. 2 1
482 89.39 humidity 80.0 10 > th dose independent rect. 11 1
509 89.42 humidity 90.0 30 < th dose independent rect. 16 1
518 89.45 temperature 25.0 30 > th dose independent rect. 16 1
519 89.45 radiation 1.0 30 > th dose independent rect. 16 1
522 89.46 atmosphere 995.0 30 > th dose independent rect. 16 1
525 89.47 wind 9.0 30 < th dose independent rect. 16 1
526 89.47 temperature 10.0 30 > th dose independent rect. 16 1
529 89.47 atmosphere 1010.0 30 < th dose independent rect. 16 1
531 89.47 radiation 40.0 30 < th dose independent rect. 16 1
532 89.47 precipitation 0.1 30 < th dose independent rect. 16 1
533 89.47 temperature 10.0 30 > th dose independent rect. 17 23
534 89.47 precipitation 0.1 30 < th dose dependent rect. 16 1
542 89.51 atmosphere 995.0 30 > th dose independent rect. 23 23
551 89.59 atmosphere 1005.0 270 > th dose dependent rect. 2 1
556 89.61 radiation 10.0 4320 < th dose dependent rect. 3 1
568 89.62 wind 9.0 1440 < th dose independent rect. 3 1
569 89.62 temperature 10.0 1440 > th dose independent rect. 3 1
572 89.62 temperature 30.0 1440 < th dose independent rect. 3 1
576 89.62 humidity 50.0 1440 > th dose independent rect. 3 1
585 89.62 atmosphere 995.0 1440 > th dose independent rect. 3 1
586 89.62 radiation 1.0 1440 < th dose independent rect. 3 1
606 89.62 temperature 10.0 1440 > th dose independent rect. 4 23
625 89.64 temperature 25.0 720 > th dose dependent rect. 4 1
628 89.66 atmosphere 1005.0 30 > th dose independent rect. 2 4
640 89.69 temperature 10.0 30 > th dose dependent rect. 16 1
641 89.69 radiation 1.0 30 > th dose dependent rect. 16 1
644 89.70 atmosphere 1015.0 30 < th dose dependent rect. 16 1
658 89.76 wind 9.0 30 < th dose independent rect. 3 23
669 89.80 temperature 20.0 10 < th dose independent rect. 4 4
672 89.81 atmosphere 1005.0 10 > th dose independent rect. 5 1
673 89.81 wind 9.0 30 < th dose dependent rect. 16 1
679 89.84 temperature 10.0 1440 > th dose independent rect. 17 1
683 89.84 radiation 30.0 1440 < th dose independent rect. 17 1
689 89.84 temperature 10.0 1440 > th dose independent rect. 18 23
713 89.90 temperature 20.0 90 < th dose independent rect. 3 4
719 89.92 temperature 20.0 10 < th dose independent rect. 4 2
720 89.92 radiation 1.0 10 > th dose independent rect. 16 14
736 89.96 humidity 90.0 30 < th dose dependent rect. 16 1
762 90.02 temperature 20.0 270 < th dose independent rect. 2 1
788 90.08 humidity 80.0 1440 > th dose independent rect. 24 3
813 90.10 humidity 80.0 1440 > th dose independent rect. 24 5
918 90.19 wind 9.0 30 < th dose independent rect. 17 23
930 90.20 atmosphere 995.0 10 > th dose dependent rect. 16 14
935 90.21 precipitation 0.1 30 < th dose independent rect. 17 23
936 90.21 precipitation 0.1 30 < th dose dependent rect. 17 23
961 90.24 precipitation 0.1 30 < th dose independent rect. 23 23
963 90.24 precipitation 0.1 30 < th dose dependent rect. 23 23
970 90.27 radiation 1.0 10 < th dose dependent rect. 6 1
976 90.29 wind 5.0 30 < th dose independent rect. 2 4
984 90.30 atmosphere 995.0 30 > th dose dependent rect. 6 10
990 90.32 precipitation 0.1 30 < th dose independent rect. 3 23
992 90.32 precipitation 0.1 30 < th dose dependent rect. 3 23
994 90.33 temperature 20.0 10 < th dose dependent rect. 4 2
997 90.33 temperature 20.0 10 < th dose dependent rect. 4 5
1000 90.34 atmosphere 1000.0 720 > th dose independent rect. 3 8