BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0629800 Os02g0629800|AK121915
         (80 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0629800  Similar to Defensin precursor                       164   1e-41
Os04g0522100                                                      101   1e-22
Os03g0130300  Similar to Cp-thionin                                71   2e-13

>Os02g0629800 Similar to Defensin precursor
          Length = 80

 Score =  164 bits (415), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 80/80 (100%), Positives = 80/80 (100%)

Query: 1  MAPSRRMVASAFLLLAILVATEMGTTKVAEARHCLSQSHRFKGMCVSSNNCANVCRTESF 60
          MAPSRRMVASAFLLLAILVATEMGTTKVAEARHCLSQSHRFKGMCVSSNNCANVCRTESF
Sbjct: 1  MAPSRRMVASAFLLLAILVATEMGTTKVAEARHCLSQSHRFKGMCVSSNNCANVCRTESF 60

Query: 61 PDGECKSHGLERKCFCKKVC 80
          PDGECKSHGLERKCFCKKVC
Sbjct: 61 PDGECKSHGLERKCFCKKVC 80



>Os04g0522100 
          Length = 81

 Score =  101 bits (252), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 55/81 (67%), Positives = 65/81 (80%), Gaps = 1/81 (1%)

Query: 1  MAP-SRRMVASAFLLLAILVATEMGTTKVAEARHCLSQSHRFKGMCVSSNNCANVCRTES 59
          MAP SRR+    FL+L ILVA+EMGTT+VAEARHC+SQSHRF G C+  +NC +VC TE 
Sbjct: 1  MAPISRRIAPLLFLMLLILVASEMGTTRVAEARHCVSQSHRFVGACMRKSNCEHVCMTEG 60

Query: 60 FPDGECKSHGLERKCFCKKVC 80
          FP GEC+ HG+ERKCFCKK C
Sbjct: 61 FPWGECRFHGIERKCFCKKRC 81



>Os03g0130300 Similar to Cp-thionin
          Length = 81

 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 38/57 (66%), Gaps = 2/57 (3%)

Query: 24 GTTKVAEARHCLSQSHRFKGMCVSSNNCANVCRTESFPDGECKSHGLERKCFCKKVC 80
          G   VAEAR C SQSHRFKG C    NCA+VC TE FPDG C  HG+ R+C C K C
Sbjct: 26 GPVMVAEARTCESQSHRFKGPCARKANCASVCNTEGFPDGYC--HGVRRRCMCTKPC 80



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.131    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,581,706
Number of extensions: 78259
Number of successful extensions: 239
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 240
Number of HSP's successfully gapped: 6
Length of query: 80
Length of database: 17,035,801
Length adjustment: 51
Effective length of query: 29
Effective length of database: 14,372,887
Effective search space: 416813723
Effective search space used: 416813723
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 149 (62.0 bits)