Os03g0130300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cp-thionin.
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Os03g0130300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cp-thionin.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 626.64 | 1.18 | 7.97 | -6.94 | 0.487 | 3.79 | 1.41 | -9.86 | -0.903 | 6.56 | 25.02 | 4307 | 9.9 | 2.82 |
| 880.37 | 1.38 | 8 | -5.19 | 0.381 | 5.33 | 0.849 | -- | -1.32 | 7.79 | 24.6 | 4321 | 9.52 | 3.6 |
| 629.82 | 1.17 | 7.98 | -6.92 | 0.513 | 3.82 | -- | -9.83 | -0.905 | 6.54 | 25.02 | 4302 | 9.93 | 2.7 |
| 862.76 | 1.37 | 7.9 | -5.12 | 0.211 | 5.93 | -- | -- | -1.14 | 7.59 | 24.69 | 4340 | 10.5 | 3.05 |
| 642.41 | 1.18 | 7.98 | -6.88 | -- | 3.79 | -- | -9.8 | -0.865 | -- | 25.01 | 4309 | 9.93 | 2.7 |
| 1402.95 | 1.76 | 7.11 | -0.894 | 0.457 | -- | 1.7 | -- | 1.15 | 5.62 | -- | -- | -- | -- |
| 1409.97 | 1.76 | 7.11 | -0.885 | 0.469 | -- | -- | -- | 1.14 | 5.92 | -- | -- | -- | -- |
| 839.88 | 1.35 | 7.54 | -4.89 | -- | 4.54 | -- | -- | -0.762 | -- | 24.52 | 4291 | 9.85 | 1.8 |
| 1079.37 | 1.53 | 7.19 | -- | 1.24 | 3.68 | -- | -- | 0.54 | 6.15 | 25.1 | 4762 | 12.8 | 1.97 |
| 1421.37 | 1.76 | 7.12 | -0.871 | -- | -- | -- | -- | 1.15 | -- | -- | -- | -- | -- |
| 1430.6 | 1.77 | 7.09 | -- | 0.456 | -- | -- | -- | 1.24 | 6.02 | -- | -- | -- | -- |
| 953.87 | 1.44 | 7.14 | -- | -- | 2.84 | -- | -- | 0.562 | -- | 25 | 4297 | 15.7 | 2.28 |
| 1441.37 | 1.77 | 7.1 | -- | -- | -- | -- | -- | 1.25 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 571.72 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 11 | 583.16 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 8 |
| 12 | 583.16 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 10 |
| 15 | 583.68 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 21 | 584.69 | humidity | 80 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 22 | 585.15 | humidity | 80 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 25 | 586.97 | humidity | 80 | 43200 | > th | dose independent | rect. | 10 | 8 |
| 27 | 587.21 | humidity | 80 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 28 | 587.29 | humidity | 80 | 43200 | < th | dose independent | rect. | 10 | 7 |
| 29 | 587.59 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 4 |
| 43 | 591.27 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 20 |
| 44 | 591.48 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 47 | 591.61 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 11 |
| 49 | 591.81 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 54 | 593.21 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 8 |
| 57 | 593.35 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 11 |
| 67 | 594.07 | humidity | 80 | 43200 | > th | dose dependent | rect. | 9 | 6 |
| 71 | 594.78 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 8 |
| 81 | 595.33 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 87 | 595.81 | humidity | 90 | 43200 | > th | dose dependent | sin | 2 | NA |
| 93 | 596.22 | humidity | 70 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 102 | 597.09 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 103 | 597.54 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 20 |
| 117 | 598.86 | humidity | 90 | 43200 | > th | dose dependent | rect. | 3 | 17 |
| 126 | 599.44 | humidity | 90 | 43200 | < th | dose independent | rect. | 6 | 19 |
| 144 | 600.31 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 21 |
| 181 | 601.82 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 20 |
| 208 | 602.65 | radiation | 1 | 43200 | < th | dose dependent | rect. | 23 | 16 |
| 218 | 602.85 | radiation | 1 | 43200 | < th | dose dependent | rect. | 3 | 12 |
| 224 | 602.99 | radiation | 1 | 43200 | < th | dose dependent | sin | 13 | NA |
| 225 | 603.04 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 20 |
| 238 | 603.39 | radiation | 1 | 43200 | < th | dose dependent | rect. | 7 | 22 |
| 252 | 603.74 | radiation | 1 | 43200 | < th | dose dependent | rect. | 12 | 23 |
| 260 | 603.93 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 23 |
| 270 | 604.05 | radiation | 1 | 43200 | < th | dose dependent | rect. | 23 | 20 |
| 275 | 604.06 | radiation | 1 | 43200 | < th | dose dependent | rect. | 3 | 23 |
| 284 | 604.08 | radiation | 1 | 43200 | < th | dose dependent | no | NA | NA |
| 297 | 604.14 | radiation | 1 | 43200 | < th | dose dependent | rect. | 3 | 16 |
| 333 | 604.43 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 361 | 604.85 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 20 |
| 366 | 604.88 | radiation | 1 | 43200 | < th | dose dependent | sin | 4 | NA |
| 370 | 604.93 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 13 |
| 424 | 605.34 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 17 |
| 435 | 605.42 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 15 |
| 444 | 605.50 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 17 |
| 484 | 606.58 | radiation | 1 | 43200 | < th | dose dependent | rect. | 23 | 9 |
| 507 | 606.86 | radiation | 1 | 43200 | < th | dose dependent | rect. | 3 | 5 |
| 510 | 606.91 | humidity | 80 | 43200 | > th | dose dependent | rect. | 9 | 10 |
| 552 | 607.43 | radiation | 1 | 43200 | > th | dose independent | rect. | 6 | 9 |
| 560 | 607.46 | radiation | 1 | 43200 | < th | dose independent | rect. | 6 | 9 |
| 591 | 607.75 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 6 |
| 601 | 607.90 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 19 |
| 603 | 607.91 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 21 |
| 609 | 607.97 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 12 |
| 622 | 608.03 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 12 |
| 711 | 608.98 | humidity | 90 | 43200 | > th | dose independent | rect. | 4 | 8 |
| 735 | 609.44 | radiation | 1 | 43200 | < th | dose dependent | rect. | 9 | 4 |
| 739 | 609.52 | radiation | 1 | 43200 | < th | dose independent | rect. | 23 | 15 |
| 747 | 609.60 | radiation | 1 | 43200 | < th | dose independent | rect. | 3 | 11 |
| 787 | 609.81 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 5 |
| 799 | 610.00 | humidity | 90 | 43200 | > th | dose independent | sin | 2 | NA |
| 802 | 610.03 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 5 |
| 812 | 610.22 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 815 | 610.35 | humidity | 90 | 43200 | < th | dose independent | sin | 20 | NA |
| 874 | 611.25 | radiation | 1 | 43200 | > th | dose independent | sin | 3 | NA |
| 877 | 611.32 | radiation | 1 | 43200 | < th | dose independent | sin | 3 | NA |
| 878 | 611.33 | radiation | 1 | 43200 | < th | dose independent | rect. | 12 | 23 |
| 958 | 612.12 | radiation | 1 | 43200 | > th | dose independent | rect. | 12 | 23 |
| 977 | 612.52 | radiation | 1 | 43200 | < th | dose independent | rect. | 23 | 20 |
| 980 | 612.52 | radiation | 1 | 43200 | < th | dose independent | rect. | 3 | 23 |
| 991 | 612.55 | radiation | 1 | 43200 | < th | dose independent | no | NA | NA |