BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0130300 Os03g0130300|AK120826
(81 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G02100.1 | chr2:528397-528885 FORWARD LENGTH=78 77 2e-15
AT2G02130.1 | chr2:540071-540407 FORWARD LENGTH=78 75 9e-15
AT1G61070.1 | chr1:22492020-22492470 REVERSE LENGTH=77 74 1e-14
AT2G02120.1 | chr2:538319-538842 FORWARD LENGTH=78 72 6e-14
AT5G63660.1 | chr5:25485692-25486062 FORWARD LENGTH=74 63 3e-11
AT2G31957.1 | chr2:13587709-13588187 FORWARD LENGTH=83 60 2e-10
AT2G02140.1 | chr2:544755-545169 FORWARD LENGTH=74 52 9e-08
AT2G31953.1 | chr2:13583430-13584020 FORWARD LENGTH=87 49 5e-07
AT2G02147.1 | chr2:546664-547026 FORWARD LENGTH=81 45 7e-06
>AT2G02100.1 | chr2:528397-528885 FORWARD LENGTH=78
Length = 77
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 1 MEASRKVFSXXXXXXXXXXXTGEMGGPVMVAEARTCESQSHRFKGPCARKANCASVCNTE 60
M+ S ++ S TG GPV V EARTCESQSHRFKG C +NCA+VC+ E
Sbjct: 1 MKLSMRLISAVLIMFMIFVATGM--GPVTV-EARTCESQSHRFKGTCVSASNCANVCHNE 57
Query: 61 GFPDGYCHGVRRRCMCTKPC 80
GF G C G RRRC CT+ C
Sbjct: 58 GFVGGNCRGFRRRCFCTRHC 77
>AT2G02130.1 | chr2:540071-540407 FORWARD LENGTH=78
Length = 77
Score = 74.7 bits (182), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 1 MEASRKVFSXXXXXXXXXXXTGEMGGPVMVAEARTCESQSHRFKGPCARKANCASVCNTE 60
M+ S + S TG GPV V EARTCES+SHRFKGPC NCA+VC+ E
Sbjct: 1 MKLSVRFISAALLLFMVFIATGM--GPVTV-EARTCESKSHRFKGPCVSTHNCANVCHNE 57
Query: 61 GFPDGYCHGVRRRCMCTKPC 80
GF G C G RRRC CT+ C
Sbjct: 58 GFGGGKCRGFRRRCYCTRHC 77
>AT1G61070.1 | chr1:22492020-22492470 REVERSE LENGTH=77
Length = 76
Score = 74.3 bits (181), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 40/53 (75%)
Query: 28 VMVAEARTCESQSHRFKGPCARKANCASVCNTEGFPDGYCHGVRRRCMCTKPC 80
++ EARTCE+ S+ F GPC +NCA+VC+ EGF DG C G RRRC+CT+PC
Sbjct: 24 LVTVEARTCETSSNLFNGPCLSSSNCANVCHNEGFSDGDCRGFRRRCLCTRPC 76
>AT2G02120.1 | chr2:538319-538842 FORWARD LENGTH=78
Length = 77
Score = 72.0 bits (175), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 1 MEASRKVFSXXXXXXXXXXXTGEMGGPVMVAEARTCESQSHRFKGPCARKANCASVCNTE 60
M+ S ++ S TG GPV V EARTC SQS RFKG C NC +VC+ E
Sbjct: 1 MKFSMRLISAVLFLVMIFVATGM--GPVTV-EARTCASQSQRFKGKCVSDTNCENVCHNE 57
Query: 61 GFPDGYCHGVRRRCMCTKPC 80
GFP G C G RRRC CT+ C
Sbjct: 58 GFPGGDCRGFRRRCFCTRNC 77
>AT5G63660.1 | chr5:25485692-25486062 FORWARD LENGTH=74
Length = 73
Score = 62.8 bits (151), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 33/54 (61%)
Query: 27 PVMVAEARTCESQSHRFKGPCARKANCASVCNTEGFPDGYCHGVRRRCMCTKPC 80
++ E RTC+S+SH FK C NCA VC EGF G CHG RRC CT+ C
Sbjct: 20 EIIGGEGRTCQSKSHHFKYMCTSNHNCAIVCRNEGFSGGRCHGFHRRCYCTRLC 73
>AT2G31957.1 | chr2:13587709-13588187 FORWARD LENGTH=83
Length = 82
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 37/60 (61%)
Query: 21 TGEMGGPVMVAEARTCESQSHRFKGPCARKANCASVCNTEGFPDGYCHGVRRRCMCTKPC 80
T + P MV + CE++S +KG C + NC VC +EGF DG C G R+C+C+KPC
Sbjct: 18 TILLASPEMVEGQQMCEAKSLDWKGMCLKWRNCRQVCISEGFTDGRCKGFTRKCICSKPC 77
>AT2G02140.1 | chr2:544755-545169 FORWARD LENGTH=74
Length = 73
Score = 51.6 bits (122), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 1 MEASRKVFSXXXXXXXXXXXTGEMGGPVMVAEARTCESQSHRFKGPCARKANCASVCNTE 60
M+ S ++ S TG GPV EARTCES S++F+G C +CA C +E
Sbjct: 1 MKLSLRLISALLMSVMLLFATGM--GPV---EARTCESPSNKFQGVCLNSQSCAKACPSE 55
Query: 61 GFPDGYCHGVRRRCMCTKPC 80
GF G C + RC C+K C
Sbjct: 56 GFSGGRCSSL--RCYCSKAC 73
>AT2G31953.1 | chr2:13583430-13584020 FORWARD LENGTH=87
Length = 86
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 26 GPVMVAEAR--TCESQSHRFKGPCARKANCASVCNTEGFPDGYCHG-VRRRCMCTKPC 80
G MV E + CE++S ++G C + +C VC +EGFPDG C G +C+C KPC
Sbjct: 22 GMKMVVEGQPQLCETKSLNYRGLCLKWRSCKRVCISEGFPDGRCKGFFNNKCVCRKPC 79
>AT2G02147.1 | chr2:546664-547026 FORWARD LENGTH=81
Length = 80
Score = 45.1 bits (105), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 1 MEASRKVFSXXXXXXXXXXXTGEMGGPVMVAEARTCESQSHRFKGPCARKANCASVCNT- 59
M+ S + S T P+ + + C+++S RF G C NCA +C
Sbjct: 1 MKLSLRFLSVLLLIAFMVLATTAEVSPL---DNKICKTRSDRFSGVCISTNNCAIICQQF 57
Query: 60 EGFPDGYCH--GVRRRCMCTKPC 80
E F G+C G RRCMCTK C
Sbjct: 58 EHFDGGHCEFDGAFRRCMCTKQC 80
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.134 0.459
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,583,481
Number of extensions: 49414
Number of successful extensions: 179
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 9
Length of query: 81
Length of database: 11,106,569
Length adjustment: 52
Effective length of query: 29
Effective length of database: 9,680,937
Effective search space: 280747173
Effective search space used: 280747173
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 105 (45.1 bits)