Os04g0189400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Gamma Purothionin family protein.
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Os04g0189400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Gamma Purothionin family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 334.55 | 0.859 | 3.15 | -0.277 | 0.0686 | 1.21 | -1.06 | 3.64 | -0.115 | 0.318 | 25.3 | 734 | -- | -- |
| 346.84 | 0.867 | 3.07 | 0.403 | 0.0676 | 1.03 | -1.64 | -- | 0.00901 | 23.2 | 39.17 | 1094 | -- | -- |
| 338.45 | 0.857 | 3.16 | -0.426 | 0.12 | 1.17 | -- | 4.33 | -0.143 | 23 | 26.93 | 830 | -- | -- |
| 358.71 | 0.882 | 3.07 | 0.465 | 0.0947 | 1.07 | -- | -- | 0.0101 | 0.391 | 63.62 | 1074 | -- | -- |
| 339.16 | 0.858 | 3.16 | -0.354 | -- | 1.23 | -- | 4.25 | -0.131 | -- | 25.51 | 787 | -- | -- |
| 363.26 | 0.894 | 3.11 | 0.0904 | 0.0808 | -- | 1.73 | -- | -0.175 | 11.2 | -- | -- | -- | -- |
| 376.06 | 0.908 | 3.11 | 0.161 | 0.0724 | -- | -- | -- | -0.168 | 11.5 | -- | -- | -- | -- |
| 359.11 | 0.883 | 3.07 | 0.461 | -- | 1.01 | -- | -- | 0.00808 | -- | 35.96 | 1113 | -- | -- |
| 363.8 | 0.888 | 3.09 | -- | 0.0728 | 0.871 | -- | -- | -0.0688 | 0.0389 | 72.74 | 1034 | -- | -- |
| 376.39 | 0.907 | 3.11 | 0.159 | -- | -- | -- | -- | -0.169 | -- | -- | -- | -- | -- |
| 376.75 | 0.908 | 3.11 | -- | 0.0707 | -- | -- | -- | -0.186 | 11.3 | -- | -- | -- | -- |
| 364.02 | 0.889 | 3.09 | -- | -- | 0.826 | -- | -- | -0.07 | -- | 76.69 | 1105 | -- | -- |
| 377.06 | 0.906 | 3.11 | -- | -- | -- | -- | -- | -0.187 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 321.03 | humidity | 80 | 90 | < th | dose independent | rect. | 22 | 8 |
| 2 | 323.88 | humidity | 80 | 270 | < th | dose independent | rect. | 21 | 16 |
| 9 | 326.21 | humidity | 80 | 270 | < th | dose independent | sin | 8 | NA |
| 10 | 326.46 | humidity | 80 | 90 | < th | dose dependent | rect. | 22 | 8 |
| 16 | 327.86 | wind | 5 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 24 | 328.64 | wind | 5 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 28 | 329.56 | humidity | 80 | 10 | < th | dose independent | rect. | 21 | 10 |
| 34 | 330.05 | temperature | 20 | 720 | < th | dose independent | rect. | 18 | 9 |
| 52 | 330.79 | wind | 5 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 56 | 330.97 | humidity | 80 | 270 | < th | dose dependent | rect. | 21 | 11 |
| 58 | 331.08 | humidity | 80 | 10 | < th | dose independent | rect. | 21 | 19 |
| 86 | 332.05 | temperature | 20 | 720 | < th | dose independent | sin | 15 | NA |
| 88 | 332.07 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 15 |
| 101 | 332.45 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 6 |
| 104 | 332.47 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 108 | 332.50 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 14 |
| 109 | 332.53 | humidity | 80 | 10 | < th | dose dependent | rect. | 21 | 10 |
| 112 | 332.56 | temperature | 25 | 720 | < th | dose dependent | rect. | 18 | 10 |
| 116 | 332.60 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 3 |
| 121 | 332.65 | humidity | 90 | 10 | < th | dose dependent | rect. | 22 | 8 |
| 126 | 332.69 | temperature | 25 | 720 | < th | dose dependent | rect. | 10 | 19 |
| 153 | 332.99 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 9 |
| 163 | 333.04 | temperature | 25 | 720 | < th | dose dependent | sin | 14 | NA |
| 180 | 333.17 | temperature | 20 | 720 | < th | dose independent | rect. | 6 | 21 |
| 221 | 333.35 | temperature | 20 | 720 | < th | dose dependent | rect. | 19 | 6 |
| 224 | 333.37 | temperature | 20 | 1440 | > th | dose independent | sin | 16 | NA |
| 248 | 333.42 | temperature | 20 | 720 | < th | dose dependent | rect. | 21 | 4 |
| 265 | 333.49 | temperature | 20 | 720 | < th | dose independent | sin | 22 | NA |
| 292 | 333.61 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 2 |
| 374 | 333.95 | temperature | 20 | 270 | > th | dose independent | rect. | 13 | 19 |
| 489 | 334.36 | temperature | 20 | 720 | < th | dose dependent | sin | 18 | NA |
| 521 | 334.48 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 532 | 334.52 | temperature | 20 | 720 | > th | dose independent | rect. | 6 | 19 |
| 542 | 334.55 | temperature | 25 | 720 | < th | dose dependent | rect. | 14 | 23 |
| 549 | 334.58 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 15 |
| 555 | 334.60 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 595 | 334.71 | temperature | 20 | 720 | < th | dose independent | rect. | 6 | 15 |
| 628 | 334.83 | temperature | 15 | 720 | > th | dose dependent | sin | 12 | NA |
| 633 | 334.84 | temperature | 25 | 720 | < th | dose dependent | rect. | 18 | 23 |
| 652 | 334.92 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 682 | 335.02 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 5 |
| 746 | 335.20 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 23 |
| 804 | 335.41 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 18 |
| 829 | 335.49 | temperature | 20 | 720 | < th | dose independent | rect. | 6 | 17 |
| 845 | 335.54 | humidity | 90 | 270 | < th | dose dependent | sin | 9 | NA |
| 851 | 335.55 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 6 |
| 857 | 335.58 | temperature | 20 | 720 | < th | dose independent | rect. | 8 | 12 |
| 875 | 335.63 | humidity | 80 | 270 | > th | dose independent | rect. | 22 | 10 |