BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0120200 Os03g0120200|AK121787
         (423 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0120200  Remorin, C-terminal region domain containing p...   591   e-169
Os02g0116800  Remorin, C-terminal region domain containing p...   188   5e-48
Os04g0620200  Remorin, C-terminal region domain containing p...   120   2e-27
AK101665                                                           93   3e-19

>Os03g0120200 Remorin, C-terminal region domain containing protein
          Length = 423

 Score =  591 bits (1523), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 303/423 (71%), Positives = 303/423 (71%)

Query: 1   MEYERIHGPPLQRQSGGFSPAKLRAMLLGLEKNQHNGEDTSPEANDSGELDDQRXXXXXX 60
           MEYERIHGPPLQRQSGGFSPAKLRAMLLGLEKNQHNGEDTSPEANDSGELDDQR      
Sbjct: 1   MEYERIHGPPLQRQSGGFSPAKLRAMLLGLEKNQHNGEDTSPEANDSGELDDQRSMECST 60

Query: 61  XXXXXXXXGHRSRNRAQXXXXXXXXXXXXGPPTVKRPAAVTALLPPFSRPTPSKWDDAEK 120
                   GHRSRNRAQ            GPPTVKRPAAVTALLPPFSRPTPSKWDDAEK
Sbjct: 61  STEMSSNSGHRSRNRAQDDDSFDSESSSSGPPTVKRPAAVTALLPPFSRPTPSKWDDAEK 120

Query: 121 WISSPTXXXXXXXXXXXXXXXXXXXXXFPEHVSRXXXXXXXXXXXXINTGTLVKNSVALA 180
           WISSPT                     FPEHVSR            INTGTLVKNSVALA
Sbjct: 121 WISSPTANRGGRVGSAAGAAPKKSALAFPEHVSRPPAVAKVVAEVPINTGTLVKNSVALA 180

Query: 181 QPISFNPAQSASIVDEPAPAVRSVSMRDMGTEMTPIASQEPSRTGXXXXXXXXXXXXXXX 240
           QPISFNPAQSASIVDEPAPAVRSVSMRDMGTEMTPIASQEPSRTG               
Sbjct: 181 QPISFNPAQSASIVDEPAPAVRSVSMRDMGTEMTPIASQEPSRTGTPIIASSPTSSRTPT 240

Query: 241 XQRNAEISIGEFGPNKMEMSEEELQMNTRKEIMDLGQRLGKTTIAAWASKEEKSTTSFAN 300
            QRNAEISIGEFGPNKMEMSEEELQMNTRKEIMDLGQRLGKTTIAAWASKEEKSTTSFAN
Sbjct: 241 PQRNAEISIGEFGPNKMEMSEEELQMNTRKEIMDLGQRLGKTTIAAWASKEEKSTTSFAN 300

Query: 301 VITDKAVXXXXXXXXXXXXXXXXXXYLARFQREEVKIQAWENHQKAKIEAEMKRMEAKIE 360
           VITDKAV                  YLARFQREEVKIQAWENHQKAKIEAEMKRMEAKIE
Sbjct: 301 VITDKAVEIDREARAADWEEAEKAKYLARFQREEVKIQAWENHQKAKIEAEMKRMEAKIE 360

Query: 361 IKRAREQDRLSSKLXXXXXXXXXXXXXXXSRKNXXXXXXXXXXXXIRKTGHIPSSISCWC 420
           IKRAREQDRLSSKL               SRKN            IRKTGHIPSSISCWC
Sbjct: 361 IKRAREQDRLSSKLAAARHKAEARREAAESRKNQEAARTEEQAAQIRKTGHIPSSISCWC 420

Query: 421 WCL 423
           WCL
Sbjct: 421 WCL 423



>Os02g0116800 Remorin, C-terminal region domain containing protein
          Length = 510

 Score =  188 bits (478), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 110/262 (41%), Positives = 145/262 (55%), Gaps = 12/262 (4%)

Query: 171 TLVKNSVALAQPISFNPAQSASIVDEPAPAVRSVSMRDMGTEMTPIASQEPSRTGXXXXX 230
           T+  ++V  ++  S    QSA+    P P VRSVSMRDMGTEMTPIASQEPSRTG     
Sbjct: 250 TVADSAVTFSRHDSSATLQSATTCIPPPPTVRSVSMRDMGTEMTPIASQEPSRTGTPVRA 309

Query: 231 XXXXXXXXXXXQR-------NAEISIGEFGPNKMEMSEEELQMNTRKEIMDLGQRLGKTT 283
                      ++        A I  GE   + +E+SE+ELQM TR+EIM LG +LGKT 
Sbjct: 310 TSPDCSRPTTPRKTIGPNAIGAVIGHGEC--SNVELSEQELQMKTRREIMLLGTQLGKTN 367

Query: 284 IAAWASKEEK---STTSFANVITDKAVXXXXXXXXXXXXXXXXXXYLARFQREEVKIQAW 340
           IAAWAS +E+   ++ S   V  D++                   YLARF+REE+KIQAW
Sbjct: 368 IAAWASNKEEEKDASLSLKGVPMDQSTQKVTEIRAAAWEEAEKAKYLARFKREEIKIQAW 427

Query: 341 ENHQKAKIEAEMKRMEAKIEIKRAREQDRLSSKLXXXXXXXXXXXXXXXSRKNXXXXXXX 400
           E+HQ+AKIEAEM+++E  +E  RAR QD+L S+L                +++       
Sbjct: 428 EDHQRAKIEAEMRKIEVDVERMRARAQDKLMSQLASARHTADEKRAAAELKRSRAAAKTA 487

Query: 401 XXXXXIRKTGHIPSSISCWCWC 422
                IR+TG +PSSI CW WC
Sbjct: 488 EQADHIRRTGRMPSSIGCWNWC 509



>Os04g0620200 Remorin, C-terminal region domain containing protein
          Length = 284

 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/251 (35%), Positives = 119/251 (47%), Gaps = 35/251 (13%)

Query: 199 PAVRSVSMRDMGTEMTPIASQEPSRTGXXXXXXXXXXXXXXXXQRNAEISI--------- 249
           PAV SVS+RD+GTEMTPI SQ+PSRTG                 R+   SI         
Sbjct: 40  PAVHSVSVRDVGTEMTPIPSQDPSRTGTPLGSMTPT--------RSPNCSIPSTPVGGRS 91

Query: 250 --------GEFGP------NKMEMSEEELQMNTRKEIMDLGQRLGKTTIAAWASKEEKST 295
                    + GP         E+S++E+++ TRKEI  LG +LGK  IA WASKEE   
Sbjct: 92  TASPGDDNTDDGPYFNRKGGTNEISDDEMRLKTRKEIAALGIQLGKMNIATWASKEELEL 151

Query: 296 TSFANVITD-KAVXXXXXXXXXXXXXXXXXXYLARFQREEVKIQAWENHQKAKIEAEMKR 354
            S +  I D + +                  + ARF++EE+KI+AWE+ QKAKIE+EMKR
Sbjct: 152 VSASPSIADLERMKKEYAARAAAYEEAENFKHTARFKKEELKIEAWESLQKAKIESEMKR 211

Query: 355 MEAKIEIKRAREQDRLSSKLXXXXXXXXXXXXXXXSRKNXXXXXXXXXXXXIRKTGHIP- 413
           +E   E  R+    +++ KL               +R N            IR+TG +P 
Sbjct: 212 IEEHAEKLRSEAMAKMAEKLEMTRRLAEEKRASANARMNQQAAKAVHKAELIRQTGRVPG 271

Query: 414 SSISCW--CWC 422
           S I C   C+C
Sbjct: 272 SCILCCSGCFC 282



>AK101665 
          Length = 361

 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 99/227 (43%), Gaps = 18/227 (7%)

Query: 197 PAPAVRSVSMRDMGTEMTPIASQEPSRTGXXXXXXXXXXXX------XXXXQRNAEISIG 250
           PA  +RSV +RDMGTEMTPIAS+EPSR+                       +R  ++++G
Sbjct: 139 PAAVLRSVCLRDMGTEMTPIASKEPSRSATPLRASTPVSRSPVPSRPSTPGRRRYDVAVG 198

Query: 251 EFGPNKMEMSEEELQMNTRKEIMDLGQRLGKTTIAAWASKEEKSTTSFANVITDKAVXXX 310
                        +  +   E + +G            + +E S+  F N    ++    
Sbjct: 199 VTA----------VVESRTAEPVAVGSVSDGGGFGGGCAVDESSSGGFGNHA--QSTTTG 246

Query: 311 XXXXXXXXXXXXXXXYLARFQREEVKIQAWENHQKAKIEAEMKRMEAKIEIKRAREQDRL 370
                          + AR++REE+KIQAWENH+K K E EMK++E K E  +AR  ++L
Sbjct: 247 LESRAVAWDEAERAKFTARYKREEMKIQAWENHEKRKAELEMKKIEMKAEQMKARAHEKL 306

Query: 371 SSKLXXXXXXXXXXXXXXXSRKNXXXXXXXXXXXXIRKTGHIPSSIS 417
           ++KL               ++ N            IR+TGH+PS  S
Sbjct: 307 ANKLAAARRMAEEKRATAEAKLNEHAARTTQKADYIRRTGHLPSFFS 353



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.126    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,431,910
Number of extensions: 330961
Number of successful extensions: 798
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 784
Number of HSP's successfully gapped: 4
Length of query: 423
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 319
Effective length of database: 11,605,545
Effective search space: 3702168855
Effective search space used: 3702168855
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 157 (65.1 bits)