BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0116900 Os03g0116900|AK121611
(563 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0116900 Armadillo-like helical domain containing protein 948 0.0
Os10g0522601 Armadillo-like helical domain containing protein 654 0.0
Os07g0560300 Armadillo-like helical domain containing protein 130 3e-30
Os06g0683950 Armadillo-like helical domain containing protein 126 5e-29
Os09g0135800 Armadillo-like helical domain containing protein 122 9e-28
Os11g0515000 Armadillo-like helical domain containing protein 74 3e-13
>Os03g0116900 Armadillo-like helical domain containing protein
Length = 563
Score = 948 bits (2450), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 502/563 (89%), Positives = 502/563 (89%)
Query: 1 MSLWKHPAAAGDGEVVETVVELLARVRXXXXXXXXXXXXXXXXXXRWKAIAAKLEGLPAC 60
MSLWKHPAAAGDGEVVETVVELLARVR RWKAIAAKLEGLPAC
Sbjct: 1 MSLWKHPAAAGDGEVVETVVELLARVRGMVPPALGAAGAAEGFPGRWKAIAAKLEGLPAC 60
Query: 61 LSDLSSHPCFAKNALCRELLQSVXXXXXXXXXXXXXXXXXXXXGKLQMQSAIDALAGKLD 120
LSDLSSHPCFAKNALCRELLQSV GKLQMQSAIDALAGKLD
Sbjct: 61 LSDLSSHPCFAKNALCRELLQSVAATLAEAAELAARCREPPAAGKLQMQSAIDALAGKLD 120
Query: 121 LNLRDCALLVKTGVLSDAFTPPPPTDEATSTATAAQADVRELLARLQIGHTEAKSLAVDG 180
LNLRDCALLVKTGVLSDAFTPPPPTDEATSTATAAQADVRELLARLQIGHTEAKSLAVDG
Sbjct: 121 LNLRDCALLVKTGVLSDAFTPPPPTDEATSTATAAQADVRELLARLQIGHTEAKSLAVDG 180
Query: 181 LLEALNKDEKSVLSVLGRANVAALVQLLTAPATKVREKAATVICQLAESGGCEGLLVSEG 240
LLEALNKDEKSVLSVLGRANVAALVQLLTAPATKVREKAATVICQLAESGGCEGLLVSEG
Sbjct: 181 LLEALNKDEKSVLSVLGRANVAALVQLLTAPATKVREKAATVICQLAESGGCEGLLVSEG 240
Query: 241 ALPPLIRLAESGSLLGREKAVITLQRLSMSSDTARAIAGHGGARPLIEMCQTGDSISQSA 300
ALPPLIRLAESGSLLGREKAVITLQRLSMSSDTARAIAGHGGARPLIEMCQTGDSISQSA
Sbjct: 241 ALPPLIRLAESGSLLGREKAVITLQRLSMSSDTARAIAGHGGARPLIEMCQTGDSISQSA 300
Query: 301 AAGALKNLSAVPEVRQALADEGIVRVMVGLLDCGTVLGSKEHAADCLQNLTSSSDSFRRA 360
AAGALKNLSAVPEVRQALADEGIVRVMVGLLDCGTVLGSKEHAADCLQNLTSSSDSFRRA
Sbjct: 301 AAGALKNLSAVPEVRQALADEGIVRVMVGLLDCGTVLGSKEHAADCLQNLTSSSDSFRRA 360
Query: 361 VVSDGGLRSLLVYLDGPLPQESAVSALRNLVSAVSPDSLVSLGVLPRLAHVLRVGSTGXX 420
VVSDGGLRSLLVYLDGPLPQESAVSALRNLVSAVSPDSLVSLGVLPRLAHVLRVGSTG
Sbjct: 361 VVSDGGLRSLLVYLDGPLPQESAVSALRNLVSAVSPDSLVSLGVLPRLAHVLRVGSTGAQ 420
Query: 421 XXXXXXICRISTTTDMKRVVGEHGCVPLLVRMLDAKSNGAREVAAQAMASLVGYPPNARE 480
ICRISTTTDMKRVVGEHGCVPLLVRMLDAKSNGAREVAAQAMASLVGYPPNARE
Sbjct: 421 QAAAAAICRISTTTDMKRVVGEHGCVPLLVRMLDAKSNGAREVAAQAMASLVGYPPNARE 480
Query: 481 VRRDGKSVPCLVQLLDPSPANTAKKYAIACLLSLAAAKRCKKLMISHGAIGYLKKLSDMD 540
VRRDGKSVPCLVQLLDPSPANTAKKYAIACLLSLAAAKRCKKLMISHGAIGYLKKLSDMD
Sbjct: 481 VRRDGKSVPCLVQLLDPSPANTAKKYAIACLLSLAAAKRCKKLMISHGAIGYLKKLSDMD 540
Query: 541 VAGAXXXXXXXXXXXXXXXFSRD 563
VAGA FSRD
Sbjct: 541 VAGAKKLLERLERGKLRSLFSRD 563
>Os10g0522601 Armadillo-like helical domain containing protein
Length = 453
Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/456 (75%), Positives = 383/456 (83%), Gaps = 5/456 (1%)
Query: 108 MQSAIDALAGKLDLNLRDCALLVKTGVLSDAFTPPPPTDEATSTATAAQADVRELLARLQ 167
MQS +DALAGKLDLNLRDCALL+KTGVLSDA A + AAQ DVRELLARLQ
Sbjct: 1 MQSDLDALAGKLDLNLRDCALLIKTGVLSDATV----PPVAPAAEAAAQTDVRELLARLQ 56
Query: 168 IGHTEAKSLAVDGLLEALNKDEKSVLSVLGRANVAALVQLLTAPATKVREKAATVICQLA 227
IGH EAK AVDGLL+AL +DEKSVLS LGR NVAALVQLLTA A K+REKAATV+C LA
Sbjct: 57 IGHAEAKHRAVDGLLDALREDEKSVLSALGRGNVAALVQLLTATAPKIREKAATVLCLLA 116
Query: 228 ESGGCEGLLVSEGALPPLIRLAESGSLLGREKAVITLQRLSMSSDTARAIAGHGGARPLI 287
ESG CE LLVSEGALPPLIRL ESGSL+GREKAVITLQRLSMS D ARAI GH G RPLI
Sbjct: 117 ESGSCECLLVSEGALPPLIRLVESGSLVGREKAVITLQRLSMSPDIARAIVGHSGVRPLI 176
Query: 288 EMCQTGDSISQSAAAGALKNLSAVPEVRQALADEGIVRVMVGLLDCGTVLGSKEHAADCL 347
++CQTGDSISQSAAAGALKNLSAVPEVRQALA+EGIVRVMV LLDCG VLG KE+AA+CL
Sbjct: 177 DICQTGDSISQSAAAGALKNLSAVPEVRQALAEEGIVRVMVNLLDCGVVLGCKEYAAECL 236
Query: 348 QNLTSSSDSFRRAVVSDGGLRSLLVYLDGPLPQESAVSALRNLV-SAVSPDSLVSLGVLP 406
Q+LTSS+D RRAVVS+GGLRSLL YLDGPLPQESAV ALRNLV SA+SPDSLVSLGVLP
Sbjct: 237 QSLTSSNDGLRRAVVSEGGLRSLLAYLDGPLPQESAVGALRNLVSSAISPDSLVSLGVLP 296
Query: 407 RLAHVLRVGSTGXXXXXXXXICRISTTTDMKRVVGEHGCVPLLVRMLDAKSNGAREVAAQ 466
RL HVLR GS G ICR+S++++MKR+VGEHGC+PLLVR+L+AKSNGAREVAAQ
Sbjct: 297 RLVHVLREGSVGAQQAAAAAICRVSSSSEMKRLVGEHGCMPLLVRLLEAKSNGAREVAAQ 356
Query: 467 AMASLVGYPPNAREVRRDGKSVPCLVQLLDPSPANTAKKYAIACLLSLAAAKRCKKLMIS 526
A+ASL+ NAR++++D KSVP LVQLL+PSP NTAKKYAI+CLL+L+A+KRCKKLMIS
Sbjct: 357 AVASLMSCLANARDIKKDEKSVPNLVQLLEPSPQNTAKKYAISCLLTLSASKRCKKLMIS 416
Query: 527 HGAIGYLKKLSDMDVAGAXXXXXXXXXXXXXXXFSR 562
HGAIGYLKKLS+MDVAGA FSR
Sbjct: 417 HGAIGYLKKLSEMDVAGAKKLLEKLERGKLRNLFSR 452
>Os07g0560300 Armadillo-like helical domain containing protein
Length = 587
Score = 130 bits (326), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 132/460 (28%), Positives = 227/460 (49%), Gaps = 19/460 (4%)
Query: 104 GKLQMQSAIDALAGKLDLNLRDCALLVKTGVLSDAFTPPPPTDEATSTATAAQADVRELL 163
GKL+++S +D +AG LD + + +G L+ A A ++ + VR+L
Sbjct: 103 GKLRLRSDLDVVAGTLDALVARVDEVYASGALTRARALVVSRPCAGASRDDVRFYVRDLF 162
Query: 164 ARLQIGHTEAKSLAVDGLLEALNKDEKSVLSVLGRA--NVAALVQLLTAPATKVREKAAT 221
ARL++G E + A L E L+ DEK V V+ V LV LL P V+E+
Sbjct: 163 ARLRVGGAEMRGEAAAALAEVLHDDEKCVRVVVSDVADGVCVLVWLLECPDACVQEEVLE 222
Query: 222 VICQLAESGGCEGLLVSEGALPPLIRLAESGSLL--GREKAVITLQRLSMSSDTARAIAG 279
+ +A G LV G + P+IR+ +S +E+A L +L+ +SD A A+A
Sbjct: 223 AVSVIAGFEAYRGDLVVGGVIAPVIRVLDSAGDRPSAKERAARLLCKLTENSDNAWAVAA 282
Query: 280 HGGARPLIEMCQTGDSISQS---AAAGALKNLSAVPEVRQAL-ADEGIVRVMVGLLDCGT 335
HGG L+ +C + AA L++L+ V E+R+ + A+ G V+V L
Sbjct: 283 HGGVTALLNVCADYTASGGELVCAACRVLRSLAGVDEIRKYMVAEAGAAPVLVSLCRGAA 342
Query: 336 VLGSKEHAADCLQNLTSSSDSFRRAVVSDGGLRSLLVYLDGPLP-----QESAVSALRNL 390
++ A + L + S S R AV+ +G + SL+ LD P +E A+ A+ L
Sbjct: 343 DEAAQIQAMELLAAIASGDSSVREAVLQEGAVESLVSVLDPASPRSSKAREVALRAIDAL 402
Query: 391 VSAVSP--DSLVSLGVLPRLAHVLRVGSTGXXXXXXXXICRI-STTTDMKRVVGEHGCVP 447
+ P LV+ G L R+ LR G R+ + D K+ +G+ G +P
Sbjct: 403 CLSSPPLTSRLVAAGFLDRVLVFLRSGDATLQHCALKAAHRLCHASEDTKKAMGDAGFMP 462
Query: 448 LLVRMLD-AKSNGAREVAAQAMASLVGYPPNAREVRRDGKSVPCLVQLLDPSPA--NTAK 504
LV +L AKS AR++AA+A+ ++V N + ++ ++V ++QLL P + AK
Sbjct: 463 ELVSILHAAKSLEARDMAAEALCAMVSVHRNRKRFVQEDRNVAQVLQLLGPDDEKLSPAK 522
Query: 505 KYAIACLLSLAAAKRCKKLMISHGAIGYLKKLSDMDVAGA 544
++ ++ L+ L+ + ++ ++S + L++L++ +V A
Sbjct: 523 RFLLSTLMHLSDSTSGRRKIMSSEHLRNLERLAETNVTDA 562
>Os06g0683950 Armadillo-like helical domain containing protein
Length = 599
Score = 126 bits (316), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 130/469 (27%), Positives = 225/469 (47%), Gaps = 44/469 (9%)
Query: 104 GKLQMQSAIDALAGKLDLNLRDCALLVKTGVLSDAFTPPPPTDEATSTATAAQAD----- 158
G+L+++S +D L+ KL+ +++ + +G+ P P+ + +A A
Sbjct: 113 GRLRLRSDLDNLSSKLEAHMKQLREMASSGM-------PSPSQAIVAVRPSADAGAGEKM 165
Query: 159 --VRELLARLQIGHTEAKSLAVDGLLEALNKDEK--SVLSVLGRANVAALVQLLTAPATK 214
+R+L +R++IG + +S ++ + E L +DE +++V VA L L + +
Sbjct: 166 FYMRDLFSRVRIGGSVQRSQSLATIGELLAEDEVCVKIVAVDIDDGVALLTGFLESSDAR 225
Query: 215 VREKAATVICQLAESGGCEGLLVSEGALPPLIRLAESGSLLG------------REKAVI 262
++E+AA + +A G+LV G + PL++L + + +E+A
Sbjct: 226 LQEEAAGAVAMVASFDSYRGMLVKAGVIAPLVQLLDDAAATAAVAAGGGATAVAKERAAQ 285
Query: 263 TLQRLSMSSDTARAIAGHGGARPLIEMCQTGDSISQ----SAAAGALKNLSAVPEVRQAL 318
L+ L+ +SD A+ HGG L+ C GD+ S +++ L+NLS V EV+ +
Sbjct: 286 ALRELTENSDNVWAVCAHGGLTTLLHAC--GDAGSGGKLVASSFAVLRNLSRVEEVKVFM 343
Query: 319 ADEGIVRVMVGLLDCGTVLGSKEHAADCLQNLTSSSDSFRRAVVSDGGLRSLL--VYLDG 376
A++G+V +V L K A + L + R VS G ++SLL +Y D
Sbjct: 344 AEQGVVTELVKLSQKKEE-ARKLGAVELLHAMALDDADVREEAVSMGVIQSLLQLIYPDL 402
Query: 377 PLP---QESAVSALRNLV--SAVSPDSLVSLGVLPRLAHVLRVGSTGXXXXXXXXICRIS 431
P +E A++A+ S S D L+S VL L L G + +S
Sbjct: 403 PYSYKAREVALAAIWFFCFSSVNSIDDLISSDVLGWLLFYLNNGDYAVLECTLKILRHLS 462
Query: 432 TTTD-MKRVVGEHGCVPLLVRMLDAKSNGAREVAAQAMASLVGYPPNAREVRRDGKSVPC 490
++ R++G G + L +L AKS RE+AAQ ++SL+ PN +DG ++
Sbjct: 463 EVSEEYNRMMGRAGYLSALSSLLGAKSCRVREMAAQVLSSLLLLHPNRVIFIQDGDNLNR 522
Query: 491 LVQLLDPSPAN-TAKKYAIACLLSLAAAKRCKKLMISHGAIGYLKKLSD 538
L+QLLDP+ AK ++ +LSLA +K +IS LK+L+D
Sbjct: 523 LLQLLDPAEGKLVAKDLILSAILSLADTNSGRKKIISSEHFSSLKELAD 571
>Os09g0135800 Armadillo-like helical domain containing protein
Length = 583
Score = 122 bits (305), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 158/530 (29%), Positives = 264/530 (49%), Gaps = 41/530 (7%)
Query: 46 RWKAIAAKLEGLPACLS----DLSSHPCFAKNALCRELLQSVXXXXXXXXXXXXXXXXXX 101
RW+A+ L L L+ SHP FA L LL ++
Sbjct: 42 RWRAVHGTLLALQTSLAAAPDSAVSHPLFAD--LVASLLPALRSLQALSARCQDPSLPG- 98
Query: 102 XXGKLQMQSAIDALAGKLDLNLRDCALLVKTGVL--SDAFTPPPPTDEATSTATAAQAD- 158
G+L++QS +D A L L L D +LL+++G+L + + P A++AD
Sbjct: 99 --GRLRLQSDLDIAASSLSLLLHDLSLLLRSGILYVDPSASSPNAIVLQVPAPAASRADK 156
Query: 159 ---VRELLARLQIGHTEAKSLAVDGLLEALNKD--EKSVLSVLGRANVAALVQLLTAPA- 212
+R+ ARLQIG + K A+ LL+ L D +S V +VAAL++LL A +
Sbjct: 157 SLFIRDAFARLQIGGLDLKLKALASLLDLLANDIAAESAHIVATDGDVAALLRLLDASSH 216
Query: 213 TKVREKAATVICQLAESG-GCEGLLVSEGALPPLIRLAESGSLLG-REKAVITLQRLSMS 270
+ +R++AA + LA + ++ EG L PL+R+ +SGS RE+AV ++ ++
Sbjct: 217 SALRDRAAATVAHLATACVASRKVVFDEGGLGPLLRVLDSGSAPATRERAVAAIEAITAD 276
Query: 271 SDTARAIAGHGGARPLIEMCQ--TGDSISQSAAAGALKNLSAVPEVRQALADEGIVRVMV 328
+A A+A +GG LI C+ +G + Q+ A ALKN++++ +VR AL +EG + ++V
Sbjct: 277 VGSAWAVAAYGGVPILINACRPGSGSPVVQALAVAALKNVASIEDVRSALVEEGGLPILV 336
Query: 329 GLLDCGTVLGSKEHAADCLQNLTSSSD-SFRRAVVSDGGLRSLLVYL---DGPLPQESAV 384
LL GT+ +++ +A C+ +L S D + +V G L LL L G ++ +
Sbjct: 337 DLLASGTI-DAQKGSALCIWSLASLGDHEIQYQIVQAGALLPLLQALHTASGLDLHDTVL 395
Query: 385 SALRNLVSAVSPDSLVSLGVLPRLAHVL-----RVGSTGXXXXXXXXICRIS--TTTDMK 437
A+ L AV P + +L P L R GS + ++ + D K
Sbjct: 396 RAIHAL--AVVPAAARTLCSSPLFFAQLTDLMCRGGSILLQQMAADMVAELAPGVSDDTK 453
Query: 438 RVVGEHGCVPLLVRMLD-AKSNGAREVAAQAMASLVGYPPNAREVRRDGKSVPCLVQLLD 496
R + C+ +LV+M++ AK +E A +A+ +L+ N +E+ RD KSV L+ +LD
Sbjct: 454 RCMAP--CICMLVKMMETAKPATVQESAGRALLALMTLKFNRKELVRDEKSVTRLLHMLD 511
Query: 497 PSPANTAKKYAIACLLSLA--AAKRCKKLMISHGAIGYLKKLSDMDVAGA 544
P KKY ++ +L+LA ++ + G +L+KL++ +V GA
Sbjct: 512 PRNEEIDKKYPVSVVLALALGGGNGTRRRLADSGICQHLQKLAEAEVPGA 561
>Os11g0515000 Armadillo-like helical domain containing protein
Length = 475
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 132/259 (50%), Gaps = 23/259 (8%)
Query: 303 GALKNLSAVPEVRQALADEGIVRVMVGLLDCGTVLGSKEHAADCLQNLTSSS-DSFRRAV 361
G L+NL+A P++ +EG + ++ L+ GT ++E A CLQNLTS D +R
Sbjct: 204 GVLRNLAAFPDLLPTFREEGALPSLIQLVSLGTPR-AQELALGCLQNLTSGDGDECQRLK 262
Query: 362 VS---DGGLRSLLVYLDGPLPQES----AVSALRNLVSAVSPDSLVSLGVLPRLA-HVL- 412
V DG L + +L+ + E A LRN+ S + + V HVL
Sbjct: 263 VEAFQDGALGCVKDFLESCVGDEPGLAPAFGLLRNMASF---RYIAEIAVSASFVDHVLA 319
Query: 413 -----RVGSTGXXXXXXXXICRISTTTDMKRVVGEHGCVPLLVRMLDAKSNGAREVAAQA 467
+ + +C +++ +R VG+ +P L+ ML+AK R+ AA+A
Sbjct: 320 ALGSDKAATRTEAAMALAELCNVTSHGKTRRDVGD--AIPRLIWMLEAKPAAERDAAARA 377
Query: 468 MASLVGYPPNAREVRRDGKSVPCLVQLLDPSPANTA--KKYAIACLLSLAAAKRCKKLMI 525
+A+LV + +++ + + +VQLLDPS A ++ ++ LL+++ ++RC+K M+
Sbjct: 378 LAALVAASGYRKLFKKEEQGIVNVVQLLDPSTARGGVDARFPVSVLLAVSPSRRCRKQMV 437
Query: 526 SHGAIGYLKKLSDMDVAGA 544
+ GA G+L+ L +V GA
Sbjct: 438 AAGACGFLQALLAAEVDGA 456
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.131 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,370,405
Number of extensions: 597303
Number of successful extensions: 2849
Number of sequences better than 1.0e-10: 14
Number of HSP's gapped: 2762
Number of HSP's successfully gapped: 17
Length of query: 563
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 457
Effective length of database: 11,501,117
Effective search space: 5256010469
Effective search space used: 5256010469
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)