Os11g0515000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Armadillo-like helical domain containing protein.
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Os11g0515000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Armadillo-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 242.69 | 0.732 | 7.26 | 0.932 | 0.00543 | 0.725 | -2.03 | 1.35 | 0.616 | 8.35 | 80 | 230 | -- | -- |
| 246.52 | 0.731 | 7.27 | 1.04 | 0.0107 | 0.744 | 1.88 | -- | 0.618 | 21.5 | 79.26 | 221 | -- | -- |
| 251.1 | 0.738 | 7.26 | 0.907 | 0.204 | 0.68 | -- | 1.58 | 0.6 | 10.4 | 75.26 | 72 | -- | -- |
| 259.85 | 0.751 | 7.27 | 0.983 | 0.189 | 0.785 | -- | -- | 0.629 | 11.5 | 76.4 | 95 | -- | -- |
| 253.18 | 0.741 | 7.27 | 0.913 | -- | 0.655 | -- | 1.52 | 0.597 | -- | 76 | 99 | -- | -- |
| 271.76 | 0.773 | 7.29 | 1.07 | 0.374 | -- | 1.56 | -- | 0.548 | 1.75 | -- | -- | -- | -- |
| 275.51 | 0.777 | 7.28 | 1.01 | 0.517 | -- | -- | -- | 0.534 | 4.39 | -- | -- | -- | -- |
| 259.97 | 0.751 | 7.27 | 0.939 | -- | 0.757 | -- | -- | 0.624 | -- | 79.46 | 216 | -- | -- |
| 282.13 | 0.782 | 7.29 | -- | 0.0837 | 0.898 | -- | -- | 0.564 | 22.2 | 84 | 271 | -- | -- |
| 289.87 | 0.796 | 7.29 | 1.03 | -- | -- | -- | -- | 0.548 | -- | -- | -- | -- | -- |
| 302.59 | 0.814 | 7.31 | -- | 0.537 | -- | -- | -- | 0.421 | 4.35 | -- | -- | -- | -- |
| 282.41 | 0.783 | 7.29 | -- | -- | 0.863 | -- | -- | 0.55 | -- | 82.56 | 248 | -- | -- |
| 318.08 | 0.832 | 7.31 | -- | -- | -- | -- | -- | 0.433 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 237.23 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 11 | 21 |
| 2 | 237.48 | humidity | 90 | 270 | < th | dose independent | rect. | 23 | 14 |
| 3 | 237.56 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 13 | 19 |
| 10 | 238.32 | humidity | 90 | 270 | < th | dose independent | sin | 5 | NA |
| 12 | 238.42 | humidity | 80 | 270 | > th | dose dependent | sin | 6 | NA |
| 30 | 239.64 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 15 | 19 |
| 47 | 240.61 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 2 |
| 49 | 240.68 | humidity | 80 | 270 | > th | dose dependent | rect. | 1 | 14 |
| 50 | 240.69 | humidity | 90 | 270 | > th | dose independent | sin | 5 | NA |
| 58 | 240.85 | humidity | 90 | 270 | > th | dose independent | rect. | 2 | 15 |
| 63 | 240.98 | humidity | 80 | 270 | > th | dose dependent | rect. | 2 | 8 |
| 84 | 241.40 | humidity | 80 | 270 | > th | dose dependent | rect. | 21 | 21 |
| 88 | 241.46 | temperature | 20 | 90 | > th | dose dependent | rect. | 9 | 5 |
| 110 | 241.61 | humidity | 90 | 270 | > th | dose independent | rect. | 1 | 20 |
| 118 | 241.68 | humidity | 80 | 270 | > th | dose dependent | rect. | 1 | 22 |
| 143 | 241.99 | humidity | 90 | 270 | > th | dose independent | rect. | 2 | 7 |
| 145 | 242.01 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 6 |
| 146 | 242.01 | humidity | 80 | 270 | > th | dose dependent | rect. | 1 | 20 |
| 159 | 242.10 | humidity | 80 | 270 | > th | dose dependent | rect. | 22 | 12 |
| 174 | 242.28 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 19 | 20 |
| 187 | 242.36 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 6 |
| 199 | 242.44 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 14 | 19 |
| 203 | 242.50 | atmosphere | 1005 | 1440 | < th | dose dependent | rect. | 9 | 1 |
| 233 | 242.72 | radiation | 10 | 270 | > th | dose independent | rect. | 16 | 21 |
| 251 | 242.82 | humidity | 90 | 270 | > th | dose independent | rect. | 23 | 22 |
| 261 | 242.86 | humidity | 80 | 270 | > th | dose dependent | rect. | 13 | 22 |
| 269 | 242.93 | humidity | 80 | 270 | > th | dose dependent | rect. | 9 | 23 |
| 280 | 243.02 | radiation | 1 | 270 | > th | dose dependent | rect. | 16 | 21 |
| 294 | 243.08 | radiation | 20 | 270 | < th | dose dependent | sin | 5 | NA |
| 295 | 243.08 | humidity | 80 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 299 | 243.10 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 2 | 7 |
| 343 | 243.26 | humidity | 80 | 270 | > th | dose dependent | no | NA | NA |
| 349 | 243.31 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 11 | 14 |
| 399 | 243.58 | radiation | 20 | 270 | < th | dose dependent | rect. | 2 | 9 |
| 411 | 243.62 | humidity | 90 | 270 | < th | dose independent | rect. | 21 | 22 |
| 439 | 243.71 | radiation | 20 | 270 | < th | dose dependent | rect. | 2 | 13 |
| 463 | 243.77 | radiation | 10 | 270 | < th | dose independent | sin | 5 | NA |
| 464 | 243.77 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 2 | 6 |
| 468 | 243.79 | radiation | 20 | 270 | < th | dose dependent | rect. | 2 | 11 |
| 472 | 243.81 | humidity | 80 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 537 | 243.99 | radiation | 1 | 270 | > th | dose dependent | sin | 7 | NA |
| 541 | 244.00 | wind | 3 | 720 | < th | dose independent | rect. | 8 | 1 |
| 577 | 244.11 | atmosphere | 1000 | 90 | > th | dose dependent | rect. | 4 | 5 |
| 617 | 244.21 | atmosphere | 1005 | 720 | > th | dose independent | rect. | 8 | 5 |
| 620 | 244.21 | temperature | 20 | 270 | > th | dose independent | rect. | 13 | 18 |
| 628 | 244.23 | atmosphere | 1005 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 693 | 244.35 | atmosphere | 1005 | 10 | < th | dose dependent | sin | 0 | NA |
| 695 | 244.35 | radiation | 10 | 270 | < th | dose dependent | rect. | 3 | 6 |
| 697 | 244.36 | atmosphere | 1005 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 711 | 244.38 | radiation | 1 | 270 | > th | dose dependent | rect. | 5 | 8 |
| 766 | 244.46 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 7 | 14 |
| 770 | 244.47 | atmosphere | 1005 | 4320 | < th | dose independent | rect. | 7 | 3 |
| 799 | 244.52 | humidity | 90 | 270 | > th | dose independent | rect. | 23 | 11 |
| 828 | 244.57 | radiation | 10 | 270 | < th | dose independent | rect. | 2 | 13 |
| 838 | 244.60 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 4 | 5 |
| 882 | 244.65 | radiation | 10 | 270 | > th | dose independent | rect. | 6 | 7 |
| 897 | 244.66 | radiation | 20 | 270 | > th | dose independent | rect. | 9 | 2 |
| 909 | 244.68 | radiation | 1 | 90 | > th | dose dependent | sin | 2 | NA |
| 917 | 244.69 | radiation | 1 | 270 | > th | dose dependent | rect. | 9 | 2 |
| 947 | 244.75 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 4 | 20 |
| 985 | 244.78 | radiation | 10 | 270 | < th | dose independent | rect. | 2 | 11 |