BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0515000 Os11g0515000|Os11g0515000
(475 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G50900.1 | chr5:20705051-20706718 REVERSE LENGTH=556 142 3e-34
AT2G45720.1 | chr2:18834468-18836129 FORWARD LENGTH=554 87 2e-17
AT1G01830.2 | chr1:298717-300441 REVERSE LENGTH=575 60 2e-09
>AT5G50900.1 | chr5:20705051-20706718 REVERSE LENGTH=556
Length = 555
Score = 142 bits (358), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 97/268 (36%), Positives = 142/268 (52%), Gaps = 18/268 (6%)
Query: 212 FPDLLPTFREEGALPSLIQLVSLGTPRAQELALGCLQNLTSGDGDECQRLKVEAFQDGAL 271
F + F EE A+ LI +VS GT AQE A+GCL NLTSGD D L + ++G +
Sbjct: 300 FGETKENFVEENAIFVLISMVSSGTSLAQENAVGCLANLTSGDED----LMISVVREGGI 355
Query: 272 GCVKDFLESCVGDEPGLAPAFGLLRNMASFRYIAEIAVSASFVDHVLAALGSDKXXXXXX 331
C+K F +S V L LL+N+A + E+ +S F+ ++ L
Sbjct: 356 QCLKSFWDS-VSSVKSLEVGVVLLKNLALCPIVREVVISEGFIPRLVPVLSCGVLGVRIA 414
Query: 332 XXXXXXXXCNVTSHG---KTRRDVGDA--IPRLIWMLXXXXXXXXXXXXXXXXXXXXXSG 386
V+S G K+R+++G++ I LI ML +
Sbjct: 415 AAEA------VSSLGFSSKSRKEMGESGCIVPLIDMLDGKAIEEKEAASKALSTLLVCTS 468
Query: 387 YRKLFKKEEQGIVNVVQLLDPSTARGGVDARFPVSVLLAVSPSRRCRKQMVAAGACGFLQ 446
RK+FKK ++G+V++VQLLDP + +D R+ VS L + S++CRKQ+VAAGAC LQ
Sbjct: 469 NRKIFKKSDKGVVSLVQLLDPKIKK--LDKRYTVSALELLVTSKKCRKQVVAAGACLHLQ 526
Query: 447 ALLAAEVDGAKKLADCLARGKMLGVFPR 474
L+ + +GAKKLA+ L+R K+ GVF R
Sbjct: 527 KLVDMDTEGAKKLAENLSRSKIWGVFTR 554
>AT2G45720.1 | chr2:18834468-18836129 FORWARD LENGTH=554
Length = 553
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 123/266 (46%), Gaps = 19/266 (7%)
Query: 212 FPDLLPTFREEGALPSLIQLVSLGTPR-AQELALGCLQNLTSGDGDECQRLKVEAFQDGA 270
P++ EEG + +I +++ G ++E A CLQNLTS + + L+ +
Sbjct: 303 VPEVRQNLAEEGIVKVMINILNCGILLGSKEYAAECLQNLTSSN----ETLRRSVISENG 358
Query: 271 LGCVKDFLESCVGDEPGLAPAFGLLRNMASFRYIAEIAVSASFVDHVLAALGSDKXXXXX 330
+ + +L+ + E G+A L+ +++ Y I S V HVL K
Sbjct: 359 IQTLLAYLDGPLPQESGVAAIRNLVGSVSVETYFKIIP---SLV-HVL------KSGSIG 408
Query: 331 XXXXXXXXXCNVTSHGKTRRDVGDA--IPRLIWMLXXXXXXXXXXXXXXXXXXXXXSGYR 388
C + + +T+R +G++ IP LI ML
Sbjct: 409 AQQAAASTICRIATSNETKRMIGESGCIPLLIRMLEAKASGAREVAAQAIASLVTVPRNC 468
Query: 389 KLFKKEEQGIVNVVQLLDPSTARGGVDARFPVSVLLAVSPSRRCRKQMVAAGACGFLQAL 448
+ K++E+ + ++V LL+PS G ++ VS L A+ SR+C+K MV+ GA G+L+ L
Sbjct: 469 REVKRDEKSVTSLVMLLEPSP--GNSAKKYAVSGLAALCSSRKCKKLMVSHGAVGYLKKL 526
Query: 449 LAAEVDGAKKLADCLARGKMLGVFPR 474
EV G+KKL + + +GK+ F R
Sbjct: 527 SELEVPGSKKLLERIEKGKLKSFFSR 552
>AT1G01830.2 | chr1:298717-300441 REVERSE LENGTH=575
Length = 574
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 119/270 (44%), Gaps = 28/270 (10%)
Query: 214 DLLPTFREEGALPSLIQLVSLGTPR-AQELALGCLQNLTSGDGDECQRLKVEAFQDGALG 272
+L EEG + I L++ G ++E CLQNLT+ L+ +G +
Sbjct: 324 ELRQLLAEEGIIRVSIDLLNHGILLGSREHMAECLQNLTAAS----DALREAIVSEGGVP 379
Query: 273 CVKDFLESCVGDEPGLAPAFGLLRNMASFRYIAEIAVSASFV---DHVL--AALGSDKXX 327
+ +L+ + +P A LRN+ EI V+ + + HVL +LG+ +
Sbjct: 380 SLLAYLDGPLPQQP----AVTALRNLIP-SVNPEIWVALNLLPRLRHVLKSGSLGAQQAA 434
Query: 328 XXXXXXXXXXXXCNVTSHGKTRRDVGDA--IPRLIWMLXXXXXXXXXXXXXXXXXXXXXS 385
C +T+R VG++ IP ++ +L
Sbjct: 435 ASAI--------CRFACSPETKRLVGESGCIPEIVKLLESKSNGCREAAAQAIAGLVAEG 486
Query: 386 GYRKLFKKEEQGIV-NVVQLLDPSTARGGVDARFPVSVLLAVSPSRRCRKQMVAAGACGF 444
R+ KK+ + ++ N+V LLD + G ++ V+ LL +S S + +K MV+ GA G+
Sbjct: 487 RIRRELKKDGKSVLTNLVMLLDSNP--GNTAKKYAVAGLLGMSGSEKSKKMMVSYGAIGY 544
Query: 445 LQALLAAEVDGAKKLADCLARGKMLGVFPR 474
L+ L EV GA KL + L RGK+ F R
Sbjct: 545 LKKLSEMEVMGADKLLEKLERGKLRSFFHR 574
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.138 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,897,533
Number of extensions: 175601
Number of successful extensions: 396
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 395
Number of HSP's successfully gapped: 3
Length of query: 475
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 373
Effective length of database: 8,310,137
Effective search space: 3099681101
Effective search space used: 3099681101
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)