BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0515000 Os11g0515000|Os11g0515000
(475 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0515000 Armadillo-like helical domain containing protein 523 e-149
Os12g0454700 162 5e-40
Os10g0522601 Armadillo-like helical domain containing protein 86 5e-17
Os03g0116900 Armadillo-like helical domain containing protein 72 1e-12
>Os11g0515000 Armadillo-like helical domain containing protein
Length = 475
Score = 523 bits (1348), Expect = e-149, Method: Compositional matrix adjust.
Identities = 292/475 (61%), Positives = 292/475 (61%)
Query: 1 MXXXXXESGEPAGDDVLQKAECXXXXXXXXXXXXXXXXFRRHWXXXXXXXXXXXXXXXXX 60
M ESGEPAGDDVLQKAEC FRRHW
Sbjct: 1 MPPPPPESGEPAGDDVLQKAECLRLLDALPAAAAASPAFRRHWPSISASLAALSASLSHP 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXGNDAASSLGHLHTVXXXXXXXXXXXXXXXXXRLLVS 120
GNDAASSLGHLHTV RLLVS
Sbjct: 61 AFPPSAPRLLAPLASALSALVSVAGNDAASSLGHLHTVSLLSSSAAELSQLAADARLLVS 120
Query: 121 PXXXXXXXXXXXXXXLIPXXXXXXXXXXXXXXXXXXXXXXSLPPXXXXXXXXXXXXMLDS 180
P LIP SLPP MLDS
Sbjct: 121 PGNGGGEGVAAGVDGLIPRLRLGSAASRAAALDALVDSVGSLPPSAAAVAVSAVAAMLDS 180
Query: 181 GEILPASREKXXXXXXXXXXXXXXXXXXXXXFPDLLPTFREEGALPSLIQLVSLGTPRAQ 240
GEILPASREK FPDLLPTFREEGALPSLIQLVSLGTPRAQ
Sbjct: 181 GEILPASREKAVSVLAAAQAAAAGVLRNLAAFPDLLPTFREEGALPSLIQLVSLGTPRAQ 240
Query: 241 ELALGCLQNLTSGDGDECQRLKVEAFQDGALGCVKDFLESCVGDEPGLAPAFGLLRNMAS 300
ELALGCLQNLTSGDGDECQRLKVEAFQDGALGCVKDFLESCVGDEPGLAPAFGLLRNMAS
Sbjct: 241 ELALGCLQNLTSGDGDECQRLKVEAFQDGALGCVKDFLESCVGDEPGLAPAFGLLRNMAS 300
Query: 301 FRYIAEIAVSASFVDHVLAALGSDKXXXXXXXXXXXXXXCNVTSHGKTRRDVGDAIPRLI 360
FRYIAEIAVSASFVDHVLAALGSDK CNVTSHGKTRRDVGDAIPRLI
Sbjct: 301 FRYIAEIAVSASFVDHVLAALGSDKAATRTEAAMALAELCNVTSHGKTRRDVGDAIPRLI 360
Query: 361 WMLXXXXXXXXXXXXXXXXXXXXXSGYRKLFKKEEQGIVNVVQLLDPSTARGGVDARFPV 420
WML SGYRKLFKKEEQGIVNVVQLLDPSTARGGVDARFPV
Sbjct: 361 WMLEAKPAAERDAAARALAALVAASGYRKLFKKEEQGIVNVVQLLDPSTARGGVDARFPV 420
Query: 421 SVLLAVSPSRRCRKQMVAAGACGFLQALLAAEVDGAKKLADCLARGKMLGVFPRS 475
SVLLAVSPSRRCRKQMVAAGACGFLQALLAAEVDGAKKLADCLARGKMLGVFPRS
Sbjct: 421 SVLLAVSPSRRCRKQMVAAGACGFLQALLAAEVDGAKKLADCLARGKMLGVFPRS 475
>Os12g0454700
Length = 209
Score = 162 bits (410), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 96/160 (60%), Positives = 102/160 (63%), Gaps = 26/160 (16%)
Query: 316 HVLAALGSDKXXXXXXXXXXXXXXCNVTSHGKTRRDVGDAIPRLIWMLXXXXXXXXXXXX 375
HVLAA G+DK TSHGKTRRDVGDAIPR IWML
Sbjct: 76 HVLAAPGTDK----------------ATSHGKTRRDVGDAIPRHIWMLEAKAVSERDAAA 119
Query: 376 XXXXXXXXXSGYRKLFKKEEQGIVNVVQLLDPSTARGGVDARFPVSVLLAVSPSRRCRKQ 435
SG RKLFKK+EQGIVNVVQLLDPST RGG+DARF VSVLLAVSPS RC+K
Sbjct: 120 RALAALVATSGCRKLFKKKEQGIVNVVQLLDPSTVRGGIDARFLVSVLLAVSPSWRCQKH 179
Query: 436 MVAAGACGFLQALLAAEVDGAKKLADCLARGKMLGVFPRS 475
M GF LA E DGAKKLA+CLARGKMLG+F RS
Sbjct: 180 M------GF----LATEGDGAKKLANCLARGKMLGMFLRS 209
>Os10g0522601 Armadillo-like helical domain containing protein
Length = 453
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 77/270 (28%), Positives = 125/270 (46%), Gaps = 24/270 (8%)
Query: 212 FPDLLPTFREEGALPSLIQLVSLGTPRA-QELALGCLQNLTS-GDGDECQRLKVEAFQDG 269
P++ EEG + ++ L+ G +E A CLQ+LTS DG L+ +G
Sbjct: 200 VPEVRQALAEEGIVRVMVNLLDCGVVLGCKEYAAECLQSLTSSNDG-----LRRAVVSEG 254
Query: 270 ALGCVKDFLESCVGDEPGLAPAFGLLRNMASFRYIAEIAVSASFVDHVLAALGSDKXXXX 329
L + +L+ + E A G LRN+ S + VS + ++ L +
Sbjct: 255 GLRSLLAYLDGPLPQES----AVGALRNLVSSAISPDSLVSLGVLPRLVHVL---REGSV 307
Query: 330 XXXXXXXXXXCNVTSHGKTRRDVGD--AIPRLIWMLXXXXXXXXXXXXXXXXXXXXXSGY 387
C V+S + +R VG+ +P L+ +L
Sbjct: 308 GAQQAAAAAICRVSSSSEMKRLVGEHGCMPLLVRLLEAKSNGAREVAAQAVASLMSCLAN 367
Query: 388 RKLFKKEEQGIVNVVQLLDPS---TARGGVDARFPVSVLLAVSPSRRCRKQMVAAGACGF 444
+ KK+E+ + N+VQLL+PS TA+ ++ +S LL +S S+RC+K M++ GA G+
Sbjct: 368 ARDIKKDEKSVPNLVQLLEPSPQNTAK-----KYAISCLLTLSASKRCKKLMISHGAIGY 422
Query: 445 LQALLAAEVDGAKKLADCLARGKMLGVFPR 474
L+ L +V GAKKL + L RGK+ +F R
Sbjct: 423 LKKLSEMDVAGAKKLLEKLERGKLRNLFSR 452
>Os03g0116900 Armadillo-like helical domain containing protein
Length = 563
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 121/269 (44%), Gaps = 23/269 (8%)
Query: 212 FPDLLPTFREEGALPSLIQLVSLGTPR-AQELALGCLQNLTSGDGDECQRLKVEAFQDGA 270
P++ +EG + ++ L+ GT ++E A CLQNLTS D +R V DG
Sbjct: 311 VPEVRQALADEGIVRVMVGLLDCGTVLGSKEHAADCLQNLTSSS-DSFRRAVV---SDGG 366
Query: 271 LGCVKDFLESCVGDEPGLAPAFGLLRNMASF---RYIAEIAVSASFVDHVLAALGSDKXX 327
L + +L+ + E A LRN+ S + + V HVL +
Sbjct: 367 LRSLLVYLDGPLPQES----AVSALRNLVSAVSPDSLVSLGVLPRLA-HVL------RVG 415
Query: 328 XXXXXXXXXXXXCNVTSHGKTRRDVGD--AIPRLIWMLXXXXXXXXXXXXXXXXXXXXXS 385
C +++ +R VG+ +P L+ ML
Sbjct: 416 STGAQQAAAAAICRISTTTDMKRVVGEHGCVPLLVRMLDAKSNGAREVAAQAMASLVGYP 475
Query: 386 GYRKLFKKEEQGIVNVVQLLDPSTARGGVDARFPVSVLLAVSPSRRCRKQMVAAGACGFL 445
+ +++ + + +VQLLDPS A ++ ++ LL+++ ++RC+K M++ GA G+L
Sbjct: 476 PNAREVRRDGKSVPCLVQLLDPSPANTA--KKYAIACLLSLAAAKRCKKLMISHGAIGYL 533
Query: 446 QALLAAEVDGAKKLADCLARGKMLGVFPR 474
+ L +V GAKKL + L RGK+ +F R
Sbjct: 534 KKLSDMDVAGAKKLLERLERGKLRSLFSR 562
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.138 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,859,631
Number of extensions: 305168
Number of successful extensions: 575
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 567
Number of HSP's successfully gapped: 4
Length of query: 475
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 370
Effective length of database: 11,553,331
Effective search space: 4274732470
Effective search space used: 4274732470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)